Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009379.1

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

61409 .. 63280

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009379.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgccatcgggtttcgagtctaggcggcaaggttggcggccatctgcgtgcagcgtcggtgacaagcctgacgggttcaacgaaggagctctgcgtgccgtaaccaaaatcctcggcgatggaatcggaccgctagtcccgaacgctgtcaagaaggtgatggaggcgatgcaagggccggtctacttcgagaagcacgatgtcaccggcaacatgccgagggtgctggaggaggtgattgagtcgatcaggaagaacaagatgtgtctaaaaggcgggatggcgacgccgatgggtggcggcgttagctcgctgaacatgcagctccagcgagatctcgatttctatgcttcgttggtcaactgcttcaatctgcgtggcttacagaccaagcatggaaacgtcgacattttggtgatcaggcagaacaccgagggtgagtactcgggactcgagcacgagatcattcctggagttgttgaaagccttaaaggtataaacaatgcaattccgaaatgtaaaattcattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

177

Amino Acids

19.36

Weight (kDa)

8.34

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	183, 405
AciI	CCGC	5 cut(s)	25, 37, 131, 276, 300
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	79, 370, 482
AhdI	GACNNNNNGTC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	3 cut(s)	89, 309, 325
AluI	AGCT	3 cut(s)	89, 309, 325
Alw21I	GWGCWC	2 cut(s)	91, 459
Ama87I	CYCGRG	2 cut(s)	445, 452
AoxI	GGCC	2 cut(s)	38, 176
ApeKI	GCWGC	2 cut(s)	51, 322
ApoI	RAATTY	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	128, 176
AsuHPI	GGTGA	6 cut(s)	71, 169, 196, 247, 427, 449
AvaI	CYCGRG	2 cut(s)	445, 452
AvaII	GGWCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	91, 459
BbvI	GCAGC	2 cut(s)	63, 334
BccI	CCATC	6 cut(s)	13, 49, 113, 154, 274, 286
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	417
BfaI	CTAG	2 cut(s)	21, 134
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	5 cut(s)	26, 38, 52, 301, 323
BlsI	GCNGC	5 cut(s)	27, 39, 53, 302, 324
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmeT110I	CYCGRG	2 cut(s)	445, 452
BmgT120I	GGNCC	2 cut(s)	128, 176
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	3 cut(s)	248, 311, 492
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	112, 218, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	2 cut(s)	178, 206
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	112, 218, 432
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	63, 334
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	40, 178
BsiHKAI	GWGCWC	2 cut(s)	91, 459
BsiHKCI	CYCGRG	2 cut(s)	445, 452
BsiSI	CCGG	2 cut(s)	179, 207
BslFI	GGGAC	2 cut(s)	122, 462
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	122, 462
BsnI	GGCC	2 cut(s)	40, 178
BsoBI	CYCGRG	2 cut(s)	445, 452
Bsp1286I	GDGCHC	2 cut(s)	91, 459
Bsp143I	GATC	4 cut(s)	246, 334, 417, 462
BspACI	CCGC	5 cut(s)	25, 37, 131, 276, 300
BspANI	GGCC	2 cut(s)	40, 178
BsrFI	RCCGGY	2 cut(s)	178, 206
BssAI	RCCGGY	2 cut(s)	178, 206
BssECI	CCNNGG	3 cut(s)	112, 218, 432
BssMI	GATC	4 cut(s)	246, 334, 417, 462
BssNI	GRCGYC	1 cut(s)	287
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	49, 96, 311
BstF5I	GGATG	1 cut(s)	285
BstKTI	GATC	4 cut(s)	249, 337, 420, 465
BstMBI	GATC	4 cut(s)	246, 334, 417, 462
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 95, 223, 306, 319, 328
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	217, 322
BstSCI	CCNGG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	63, 334
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	40, 178
BtgZI	GCGATG	2 cut(s)	132, 182
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	49, 96, 311
Cfr10I	RCCGGY	2 cut(s)	178, 206
Cfr13I	GGNCC	2 cut(s)	128, 176
CpoI	CGGWCCG	1 cut(s)	128
CseI	GACGC	2 cut(s)	43, 295
Csp6I	GTAC	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CspI	CGGWCCG	1 cut(s)	128
CviAII	CATG	3 cut(s)	214, 319, 395
CviJI	RGCY	8 cut(s)	40, 67, 89, 178, 309, 325, 381, 486
CviKI_1	RGCY	8 cut(s)	40, 67, 89, 178, 309, 325, 381, 486
CviQI	GTAC	1 cut(s)	442
DpnI	GATC	4 cut(s)	248, 336, 419, 464
DpnII	GATC	4 cut(s)	246, 334, 417, 462
DriI	GACNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	89
Eco88I	CYCGRG	2 cut(s)	445, 452
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	3 cut(s)	217, 322, 398
FaiI	YATR	5 cut(s)	215, 320, 348, 396, 497
FaqI	GGGAC	2 cut(s)	122, 462
FatI	CATG	3 cut(s)	213, 318, 394
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	2 cut(s)	183, 405
Fnu4HI	GCNGC	5 cut(s)	26, 38, 52, 301, 323
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	5 cut(s)	26, 38, 52, 301, 323
FspBI	CTAG	2 cut(s)	21, 134
GluI	GCNGC	5 cut(s)	26, 38, 52, 301, 323
GsuI	CTGGAG	3 cut(s)	248, 311, 492
HaeIII	GGCC	2 cut(s)	40, 178
HapII	CCGG	2 cut(s)	179, 207
HgaI	GACGC	2 cut(s)	43, 295
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	217, 322, 398
HincII	GTYRAC	2 cut(s)	361, 406
HindII	GTYRAC	2 cut(s)	361, 406
HinfI	GANTC	4 cut(s)	17, 123, 242, 450
HpaII	CCGG	2 cut(s)	179, 207
HphI	GGTGA	6 cut(s)	71, 169, 196, 247, 427, 449
Hpy166II	GTNNAC	3 cut(s)	184, 361, 406
Hpy188I	TCNGA	2 cut(s)	128, 513
Hpy188III	TCNNGA	6 cut(s)	139, 151, 190, 250, 338, 447
Hpy8I	GTNNAC	3 cut(s)	184, 361, 406
Hpy99I	CGWCG	3 cut(s)	59, 289, 407
HpyAV	CCTTC	2 cut(s)	77, 148
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	51, 172, 322, 506
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 95, 223, 306, 319, 328
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	217, 322, 398
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	246, 334, 417, 462
LmnI	GCTCC	2 cut(s)	86, 330
LpnPI	CCDG	9 cut(s)	81, 192, 212, 220, 235, 341, 406, 456, 483
Lsp1109I	GCAGC	2 cut(s)	63, 334
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	21, 134
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	59, 100, 202
MalI	GATC	4 cut(s)	248, 336, 419, 464
MboI	GATC	4 cut(s)	246, 334, 417, 462
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	91, 459
MluCI	AATT	2 cut(s)	507, 522
MlyI	GAGTC	3 cut(s)	26, 251, 444
MnlI	CCTC	6 cut(s)	122, 157, 213, 223, 226, 427
MseI	TTAA	2 cut(s)	489, 532
MslI	CAYNNNNRTG	2 cut(s)	46, 413
MspI	CCGG	2 cut(s)	179, 207
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	6 cut(s)	34, 95, 223, 306, 319, 328
NdeII	GATC	4 cut(s)	246, 334, 417, 462
NlaIII	CATG	3 cut(s)	217, 322, 398
NmeAIII	GCCGAG	2 cut(s)	93, 243
NmuCI	GTSAC	2 cut(s)	59, 202
NspI	RCATGY	2 cut(s)	217, 322
PaeR7I	CTCGAG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 195
PfeI	GAWTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	27, 39, 53, 302, 324
PleI	GAGTC	3 cut(s)	25, 250, 444
PpsI	GAGTC	3 cut(s)	25, 250, 444
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	128, 176
PspXI	VCTCGAGB	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	46, 413
Rsr2I	CGGWCCG	1 cut(s)	128
RsrII	CGGWCCG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	91
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	489, 532
SatI	GCNGC	5 cut(s)	26, 38, 52, 301, 323
Sau3AI	GATC	4 cut(s)	246, 334, 417, 462
Sau96I	GGNCC	2 cut(s)	128, 176
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	3 cut(s)	26, 251, 444
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	91, 459
SetI	ASST	8 cut(s)	34, 91, 159, 237, 311, 327, 405, 496
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	46, 413
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	507, 522
SsiI	CCGC	5 cut(s)	25, 37, 131, 276, 300
SspMI	CTAG	2 cut(s)	21, 134
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	469
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	6 cut(s)	15, 189, 245, 339, 405, 453
TasI	AATT	2 cut(s)	507, 522
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	3 cut(s)	28, 40, 303
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	489, 532
Tru9I	TTAA	2 cut(s)	489, 532
TseFI	GTSAC	2 cut(s)	59, 202
TseI	GCWGC	2 cut(s)	51, 322
Tsp45I	GTSAC	2 cut(s)	59, 202
TspDTI	ATGAA	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	2 cut(s)	217, 322
XhoI	CTCGAG	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	183, 405
XspI	CTAG	2 cut(s)	21, 134
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.