Rh5AG128100

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000567
Physical Location & Seq
Forward (+)
12331306 .. 12333630
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG128100.1

Sequence Viewer

Length: 444 bp
ATGCCCAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGCGACGGAATTGGACCGCTCGTAATGAACGCCATCGAGCAAGTGATCGAGTACCTCAATATGTTTGGTTTTGATGCAATTTATCAATGCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATGCTTCCAACCAATGTCAGTGTAGTAGTATGGCCGATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACAATGAGCTTACCTGAAGCTCCTACTCCAGCATATACAGAGATTGTCTTGAATTTGCCATATAAGCTCTTCGGAAAATGCACAAAGAGTCCGCTTAATATCACACTTGTGAAGGCAGCTGAATTTGAGCTGTGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

4.85

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 277
AciI CCGC 2 cut(s) 65, 395
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 2 cut(s) 355, 425
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 17, 53
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 218, 355
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 7 cut(s) 23, 154, 312, 323, 370, 422, 433
AluI AGCT 7 cut(s) 23, 154, 312, 323, 370, 422, 433
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 2 cut(s) 355, 425
AspS9I GGNCC 2 cut(s) 62, 266
AsuC2I CCSGG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 62, 266
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 62, 266
BmgT120I GGNCC 2 cut(s) 62, 266
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 112, 283
BpmI CTGGAG 2 cut(s) 244, 315
BpuMI CCSGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 53
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 17, 53
BseNI ACTGG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 431
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 17, 53
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 25, 34
Bsp143I GATC 2 cut(s) 93, 166
BspACI CCGC 2 cut(s) 65, 395
BspANI GGCC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 93, 166
Bst6I CTCTTC 1 cut(s) 377
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 293
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 96, 169
BstMBI GATC 2 cut(s) 93, 166
BstMWI GCNNNNNNNGC 3 cut(s) 29, 293, 367
BstSCI CCNGG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 202, 238, 257
Cfr13I GGNCC 2 cut(s) 62, 266
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 178, 250
CviJI RGCY 8 cut(s) 23, 154, 211, 312, 323, 370, 422, 433
CviKI_1 RGCY 8 cut(s) 23, 154, 211, 312, 323, 370, 422, 433
CviQI GTAC 1 cut(s) 100
DpnI GATC 2 cut(s) 95, 168
DpnII GATC 2 cut(s) 93, 166
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 62, 266
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 2 cut(s) 181, 253
FatI CATG 2 cut(s) 177, 249
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
GsuI CTGGAG 2 cut(s) 244, 315
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 181, 253
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 214, 228, 391
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 27, 377
Hpy188III TCNNGA 2 cut(s) 223, 352
Hpy8I GTNNAC 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 20, 56
HpyAV CCTTC 2 cut(s) 257, 409
HpyCH4V TGCA 5 cut(s) 125, 138, 164, 287, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 293, 367
Hsp92II CATG 2 cut(s) 181, 253
Kzo9I GATC 2 cut(s) 93, 166
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 3 cut(s) 20, 28, 328
LpnPI CCDG 6 cut(s) 19, 61, 208, 245, 330, 345
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 2 cut(s) 112, 283
MalI GATC 2 cut(s) 95, 168
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 93, 166
MboII GAAGA 1 cut(s) 364
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 25, 34
MluCI AATT 5 cut(s) 57, 126, 144, 355, 425
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 209, 293
MnlI CCTC 2 cut(s) 113, 283
MseI TTAA 3 cut(s) 150, 156, 399
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 422
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 29, 293, 367
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 93, 166
NlaIII CATG 2 cut(s) 181, 253
OliI CACNNNNGTG 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 214, 228
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 62, 266
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 150, 156, 399
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 93, 166
Sau96I GGNCC 2 cut(s) 62, 266
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 2 cut(s) 25, 34
SfaNI GCATC 2 cut(s) 112, 283
SinI GGWCC 2 cut(s) 62, 266
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 57, 126, 144, 355, 425
SsiI CCGC 2 cut(s) 65, 395
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 46
TaqI TCGA 2 cut(s) 84, 96
TasI AATT 5 cut(s) 57, 126, 144, 355, 425
TfiI GAWTC 2 cut(s) 214, 228
Tru1I TTAA 3 cut(s) 150, 156, 399
Tru9I TTAA 3 cut(s) 150, 156, 399
TscAI CASTG 3 cut(s) 202, 238, 264
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 2 cut(s) 89, 266
TspGWI ACGGA 2 cut(s) 33, 69
TspRI CASTG 3 cut(s) 202, 238, 264
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 62, 266
XapI RAATTY 2 cut(s) 355, 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.