RchiOBHm_Chr2g0135691

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
52882425 .. 52884799
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50655

Sequence Viewer

Length: 177 bp
ATGCCCAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCGGGCGACGGAATTGGACCGCTCGTAATGAACGCCGTCGAGCAGGTGATCGAGGTGATGCACGCGACGGTCTATTTTGAGAAGTACCTTGATTCCTCTGGTTCTTTTCTAATGGTGAAATCTCAGTTTTGA

Protein Analysis

58

Amino Acids

6.3

Weight (kDa)

4.58

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 65
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 17, 53
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 2 cut(s) 47, 48
AsuHPI GGTGA 3 cut(s) 103, 112, 172
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 65
BcnI CCSGG 2 cut(s) 47, 48
BfuAI ACCTGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 47, 48
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 47, 48
BmsI GCATC 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 47, 48
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 53
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 17, 53
BseSI GKGCMC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 17, 53
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 25, 34
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 65
BspFNI CGCG 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 45, 46
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 110
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 62
Cfr9I CCCGGG 1 cut(s) 46
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 25
HapII CCGG 1 cut(s) 47
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 103, 112, 172
Hpy188I TCNGA 1 cut(s) 27
Hpy99I CGWCG 4 cut(s) 20, 56, 86, 115
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 4 cut(s) 19, 60, 74, 129
LweI GCATC 1 cut(s) 93
MalI GATC 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 25, 34
MluCI AATT 1 cut(s) 57
MnlI CCTC 2 cut(s) 91, 151
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 47, 48
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 2 cut(s) 47, 48
NdeII GATC 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 47, 48
SduI GDGCHC 2 cut(s) 25, 34
SetI ASST 4 cut(s) 25, 93, 102, 135
SfaNI GCATC 1 cut(s) 93
SinI GGWCC 1 cut(s) 62
SmaI CCCGGG 1 cut(s) 48
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 45, 46
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 84, 96
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 33, 69
TspMI CCCGGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 62
XmaI CCCGGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.