Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008835.1

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

1069 .. 1526

Gene Structure 458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgcccccacccagcgacggagctcctcgtgccgtaaccaaaatccccggcgacggaatcggaccgctcgtcacgaatgtcgtcgagaaggtgatgaaggcgatgcacatgctggtttacttcgagaagtacgatgtcactaacgagatgctgagggtgtcggaggagtcacatgaccttctggctaaaccagtaggacccagccttgttcagaatctgatccctgaaatttcaatccttccattcttgccgacgacgacgtgtttcggcttgatcgcggcagaagatgaagaagaagaagaagaagtgacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

4.35

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	65, 278
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	17, 53
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	234
AhdI	GACNNNNNGTC	1 cut(s)	68
AjiI	CACGTC	2 cut(s)	261, 312
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	62, 197
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	62, 197
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BcnI	CCSGG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	62, 197
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgBI	CACGTC	2 cut(s)	261, 312
BmgT120I	GGNCC	2 cut(s)	62, 197
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	93, 138
Bpu10I	CCTNAGC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 53
Bse1I	ACTGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	17, 53
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	15, 179
BseYI	CCCAGC	2 cut(s)	11, 200
Bsh1236I	CGCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	17, 53
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	219, 273
BspACI	CCGC	2 cut(s)	65, 278
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	219, 273
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	222, 276
BstMBI	GATC	2 cut(s)	219, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	116
BtrI	CACGTC	2 cut(s)	261, 312
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	62, 197
CpoI	CGGWCCG	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	130
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	2 cut(s)	109, 173
CviJI	RGCY	4 cut(s)	23, 185, 204, 270
CviKI_1	RGCY	4 cut(s)	23, 185, 204, 270
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	221, 275
DpnII	GATC	2 cut(s)	219, 273
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	62, 197
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	2 cut(s)	112, 176
FaiI	YATR	2 cut(s)	110, 174
FatI	CATG	2 cut(s)	108, 172
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	2 cut(s)	15, 204
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	112, 176
HinfI	GANTC	3 cut(s)	57, 167, 214
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	62, 163, 213, 219
Hpy188III	TCNNGA	3 cut(s)	73, 85, 124
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	6 cut(s)	20, 56, 86, 256, 259, 262
HpyAV	CCTTC	4 cut(s)	82, 91, 188, 248
HpyCH4IV	ACGT	2 cut(s)	260, 311
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	2 cut(s)	260, 311
Hsp92II	CATG	2 cut(s)	112, 176
Kzo9I	GATC	2 cut(s)	219, 273
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	7 cut(s)	25, 61, 98, 167, 204, 214, 237
LweI	GCATC	2 cut(s)	93, 138
MaeII	ACGT	2 cut(s)	260, 311
MaeIII	GTNAC	5 cut(s)	34, 70, 136, 168, 307
MalI	GATC	2 cut(s)	221, 275
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	219, 273
MboII	GAAGA	6 cut(s)	296, 302, 305, 308, 311, 314
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	36, 147, 157
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	219, 273
NlaIII	CATG	2 cut(s)	112, 176
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	4 cut(s)	70, 136, 168, 307
NspI	RCATGY	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 129
PfeI	GAWTC	2 cut(s)	57, 214
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	197
PspFI	CCCAGC	2 cut(s)	11, 200
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	62, 197
PspPPI	RGGWCCY	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	219, 273
Sau96I	GGNCC	2 cut(s)	62, 197
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	5 cut(s)	25, 93, 180, 263, 314
SfaNI	GCATC	2 cut(s)	93, 138
SinI	GGWCC	2 cut(s)	62, 197
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	65, 278
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	46
TaiI	ACGT	2 cut(s)	263, 314
TaqI	TCGA	2 cut(s)	84, 123
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	57, 214
TseFI	GTSAC	4 cut(s)	70, 136, 168, 307
Tsp45I	GTSAC	4 cut(s)	70, 136, 168, 307
TspDTI	ATGAA	2 cut(s)	110, 303
TspGWI	ACGGA	2 cut(s)	33, 69
VpaK11BI	GGWCC	2 cut(s)	62, 197
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.