Rroxscaffold_2G00153630

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000567
Physical Location & Seq
Forward (+)
90412618 .. 90414739
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153630.1

Sequence Viewer

Length: 330 bp
ATGAGGAGCGAAAAGGTTCCCAATCCCAACTACCACCTCTCTCGAGATCTAATGCTTTCTTTGATTCATAGATGTACTCTGGGAGGTTTTGACTGTTATAAAAATGCTGAAGAGTGTAATTTCCTCTTTTGCAGCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATACTTCCAACCAATGTCAGTGTAGTAGTATGGCCCATTCAAATATGGAGATTCAGTGTAAATTTATCAACCAGCAATACACTGGAAGGTTCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACTGAAGGTATACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

109

Amino Acids

12.45

Weight (kDa)

8.3

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccI GTMKAC 2 cut(s) 274, 321
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 76
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 215, 267
AluBI AGCT 2 cut(s) 151, 309
AluI AGCT 2 cut(s) 151, 309
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 42
BbvI GCAGC 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 152
BglII AGATCT 2 cut(s) 46, 163
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 42
BsnI GGCC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 2 cut(s) 46, 163
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 152
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 46, 163
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 290
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 49, 166
BstMBI GATC 2 cut(s) 46, 163
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 46, 163
BstYI RGATCY 2 cut(s) 46, 163
BstZ17I GTATAC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 199, 235, 254
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 75
CviJI RGCY 3 cut(s) 151, 208, 309
CviKI_1 RGCY 3 cut(s) 151, 208, 309
CviQI GTAC 1 cut(s) 75
DpnI GATC 2 cut(s) 48, 165
DpnII GATC 2 cut(s) 46, 163
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 42
FaiI YATR 9 cut(s) 69, 99, 159, 176, 205, 220, 282, 305, 322
FalI AAGNNNNNCTT 1 cut(s) 308
FblI GTMKAC 2 cut(s) 274, 321
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 64, 225
Hpy166II GTNNAC 2 cut(s) 275, 322
Hpy188III TCNNGA 2 cut(s) 42, 44
Hpy8I GTNNAC 2 cut(s) 275, 322
HpyAV CCTTC 2 cut(s) 254, 310
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 132, 161, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 46, 163
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 65, 242, 259
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 280
MalI GATC 2 cut(s) 48, 165
MboI GATC 2 cut(s) 46, 163
MboII GAAGA 1 cut(s) 122
MflI RGATCY 2 cut(s) 46, 163
MluCI AATT 3 cut(s) 118, 141, 235
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 4 cut(s) 47, 77, 134, 280
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 2 cut(s) 147, 153
MspCI CTTAAG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 46, 163
NlaIV GGNNCC 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 64, 225
PkrI GCNGC 1 cut(s) 134
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 2 cut(s) 46, 163
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 147, 153
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 46, 163
Sau96I GGNCC 1 cut(s) 207
SetI ASST 8 cut(s) 18, 39, 88, 141, 153, 265, 311, 321
SfaNI GCATC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 42
SgeI CNNG 8 cut(s) 54, 56, 92, 148, 179, 258, 269, 282
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 42, 152
SmoI CTYRAG 2 cut(s) 42, 152
Sse9I AATT 3 cut(s) 118, 141, 235
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 118, 141, 235
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 2 cut(s) 64, 225
Tru1I TTAA 2 cut(s) 147, 153
Tru9I TTAA 2 cut(s) 147, 153
TscAI CASTG 3 cut(s) 199, 235, 261
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 3 cut(s) 199, 235, 261
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 42
XmiI GTMKAC 2 cut(s) 274, 321
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.