Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

32443132 .. 32444720

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGATGGCGCCGCCGATGGGTGGCGGCGTTAGCTCGCTGAACATGCAGCTCCAGCGGGATCTCGATTTCTATGCTTCGTTGGTCAACTGCTTCAATCTGCGTGGCTTACAGACCAAGCATGGCAACGTCGACATTTTGGTGATCAGGCAGAACACCGAGGGTGAGTACTCGGGACTCGAGCACGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGTTGTGTTGGTAAATTTATGTTGGTTATTTGATGATAACTTGAATATATCTGAGTGTAAACAGCTGTCAAAGGAGGAAAGACGTGAGGCATGGCACGCTAAAAAGAAATTGAAGAAGGGACTTTACAAGGGTGAAGTGCAGCATTCTCAGAGAGTAGCTGCTATATCTGGCTCTTCTTCCAAACGTCTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

9.08

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	4 - 87	1.6e-10	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 70
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	4 cut(s)	63, 74, 87, 118
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	80, 83
AgsI	TTSAA	4 cut(s)	157, 269, 322, 391
AjiI	CACGTC	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	96, 112, 343, 437
AluI	AGCT	4 cut(s)	96, 112, 343, 437
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	129
Ama87I	CYCGRG	2 cut(s)	232, 239
ApeKI	GCWGC	3 cut(s)	109, 418, 437
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	4 cut(s)	34, 214, 236, 422
AvaI	CYCGRG	2 cut(s)	232, 239
BanI	GGYRCC	2 cut(s)	10, 70
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BauI	CACGAG	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	121, 424, 430
BccI	CCATC	2 cut(s)	61, 73
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	5 cut(s)	74, 88, 110, 419, 438
BlsI	GCNGC	5 cut(s)	75, 89, 111, 420, 439
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	258
BmeT110I	CYCGRG	2 cut(s)	232, 239
BmgBI	CACGTC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	12, 72
BmrFI	CCNGG	1 cut(s)	258
BpmI	CTGGAG	2 cut(s)	98, 279
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	5, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 83
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	5, 219
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	80, 83
BseMII	CTCAG	2 cut(s)	321, 440
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	121, 424, 430
BsgI	GTGCAG	1 cut(s)	437
BshNI	GGYRCC	2 cut(s)	10, 70
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	232, 239
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	249, 411
BslI	CCNNNNNNNGG	2 cut(s)	80, 83
BsmFI	GGGAC	2 cut(s)	249, 411
BsmI	GAATGC	1 cut(s)	421
BsoBI	CYCGRG	2 cut(s)	232, 239
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	33, 121, 204, 249
BspACI	CCGC	4 cut(s)	63, 74, 87, 118
BspCNI	CTCAG	2 cut(s)	322, 439
BspLI	GGNNCC	2 cut(s)	12, 72
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	457
BspT107I	GGYRCC	2 cut(s)	10, 70
BssECI	CCNNGG	2 cut(s)	5, 219
BssMI	GATC	4 cut(s)	33, 121, 204, 249
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	98, 375
BstDEI	CTNAG	2 cut(s)	330, 426
BstF5I	GGATG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	36, 124, 207, 252
BstMBI	GATC	4 cut(s)	33, 121, 204, 249
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 93, 106, 115, 374
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	121, 424, 430
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	98, 375
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	3 cut(s)	106, 182, 369
CviJI	RGCY	7 cut(s)	96, 112, 168, 273, 343, 437, 450
CviKI_1	RGCY	7 cut(s)	96, 112, 168, 273, 343, 437, 450
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	330, 426
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	4 cut(s)	35, 123, 206, 251
DpnII	GATC	4 cut(s)	33, 121, 204, 249
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco88I	CYCGRG	2 cut(s)	232, 239
EcoRII	CCWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	3 cut(s)	109, 185, 372
FaiI	YATR	7 cut(s)	107, 135, 183, 298, 326, 370, 443
FaqI	GGGAC	2 cut(s)	249, 411
FatI	CATG	3 cut(s)	105, 181, 368
FauI	CCCGC	2 cut(s)	56, 111
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	74, 88, 110, 419, 438
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	5 cut(s)	74, 88, 110, 419, 438
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	74, 88, 110, 419, 438
GsuI	CTGGAG	2 cut(s)	98, 279
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	109, 185, 372
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	148, 193
HindII	GTYRAC	2 cut(s)	148, 193
HinfI	GANTC	2 cut(s)	29, 237
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	34, 214, 236, 422
Hpy166II	GTNNAC	3 cut(s)	148, 193, 338
Hpy188I	TCNGA	4 cut(s)	57, 331, 429, 468
Hpy188III	TCNNGA	3 cut(s)	37, 125, 234
Hpy8I	GTNNAC	3 cut(s)	148, 193, 338
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	189, 361, 463
HpyCH4V	TGCA	2 cut(s)	109, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 93, 106, 115, 374
HpyF3I	CTNAG	2 cut(s)	330, 426
HpySE526I	ACGT	3 cut(s)	189, 361, 463
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	109, 185, 372
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	33, 121, 204, 249
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	22, 27, 128, 193, 243, 270, 432
Lsp1109I	GCAGC	3 cut(s)	121, 424, 430
MaeII	ACGT	3 cut(s)	189, 361, 463
MalI	GATC	4 cut(s)	35, 123, 206, 251
MboI	GATC	4 cut(s)	33, 121, 204, 249
MboII	GAAGA	4 cut(s)	52, 403, 444, 447
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	292, 386
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	38, 231
MnlI	CCTC	5 cut(s)	10, 13, 214, 346, 358
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	118, 343
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	10, 93, 106, 115, 374
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	4 cut(s)	33, 121, 204, 249
NlaIII	CATG	3 cut(s)	109, 185, 372
NlaIV	GGNNCC	2 cut(s)	12, 72
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	75, 89, 111, 420, 439
PleI	GAGTC	2 cut(s)	37, 231
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	37, 231
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	12, 72
PspXI	VCTCGAGB	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	5 cut(s)	74, 88, 110, 419, 438
Sau3AI	GATC	4 cut(s)	33, 121, 204, 249
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	2 cut(s)	38, 231
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	24, 98, 114, 192, 345, 364, 439, 466
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	292, 386
SsiI	CCGC	4 cut(s)	63, 74, 87, 118
SspDI	GGCGCC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	256
TaiI	ACGT	3 cut(s)	192, 364, 466
TaqI	TCGA	4 cut(s)	32, 126, 192, 240
TasI	AATT	2 cut(s)	292, 386
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	2 cut(s)	76, 90
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseI	GCWGC	3 cut(s)	109, 418, 437
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.