Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

29802969 .. 29804007

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTCCAGACCCGATCGCTCACCGACATGCCCCCACCCAGCGACGGAGCTCTGCGTGCCATAACCAAAATCCCCGGCGATGGAATCGAACCGCTAGTCAAGAACGCTGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTACGATGTCACTGGCAACATGCCGAGGGTGCCGGAGGAGGTGATTAAGTCGATCAGGAAGAACAAGATGTGTCTAAAAGGCGGGCTGGCGACGCCGATGGGCGGCGACGTTAGCTCGCTGAACATGCAGCTCCGGCGAGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATATGCGTGGCTTACAGACCAAGCATGGCAACGTCGACATTCTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCATGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGGTGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

5.73

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	21 - 145	1.2e-18	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	136, 184
AccI	GTMKAC	2 cut(s)	144, 366
AciI	CCGC	3 cut(s)	92, 237, 258
AcyI	GRCGYC	2 cut(s)	137, 248
AfaI	GTAC	2 cut(s)	158, 404
AfiI	CCNNNNNNNGG	3 cut(s)	44, 80, 257
AgsI	TTSAA	2 cut(s)	331, 443
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	3 cut(s)	50, 270, 286
AluI	AGCT	3 cut(s)	50, 270, 286
Alw21I	GWGCWC	1 cut(s)	52
Ama87I	CYCGRG	2 cut(s)	406, 413
ApeKI	GCWGC	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	5 cut(s)	13, 130, 208, 388, 410
AvaI	CYCGRG	2 cut(s)	406, 413
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	136, 184
BanII	GRGCYC	2 cut(s)	52, 414
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	74, 115, 247
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	140
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	259, 284
BlsI	GCNGC	2 cut(s)	260, 285
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	75, 432
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	406, 413
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	138, 186
BmrFI	CCNGG	2 cut(s)	75, 432
BmsI	GCATC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	2 cut(s)	137, 248
BsaJI	CCNNGG	3 cut(s)	73, 179, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 80, 257
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	73, 179, 393
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	44, 80, 257
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	17
BshNI	GGYRCC	2 cut(s)	136, 184
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	2 cut(s)	406, 413
BsiSI	CCGG	4 cut(s)	75, 140, 188, 289
BslI	CCNNNNNNNGG	3 cut(s)	44, 80, 257
BsoBI	CYCGRG	2 cut(s)	406, 413
Bsp1286I	GDGCHC	2 cut(s)	52, 414
Bsp143I	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
BspACI	CCGC	3 cut(s)	92, 237, 258
BspLI	GGNNCC	2 cut(s)	138, 186
BspT107I	GGYRCC	2 cut(s)	136, 184
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	73, 179, 393
BssMI	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
BssNI	GRCGYC	2 cut(s)	137, 248
Bst2UI	CCWGG	1 cut(s)	432
BstACI	GRCGYC	2 cut(s)	137, 248
BstC8I	GCNNGC	5 cut(s)	57, 135, 239, 243, 272
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	6 cut(s)	17, 210, 298, 304, 381, 426
BstMBI	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 134, 184, 247, 267, 280, 289
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	3 cut(s)	31, 178, 283
BstSCI	CCNGG	2 cut(s)	73, 430
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtgZI	GCGATG	2 cut(s)	93, 143
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	5 cut(s)	57, 135, 239, 243, 272
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	157, 403
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	5 cut(s)	28, 175, 280, 356, 419
CviJI	RGCY	7 cut(s)	50, 241, 270, 286, 342, 412, 447
CviKI_1	RGCY	7 cut(s)	50, 241, 270, 286, 342, 412, 447
CviQI	GTAC	2 cut(s)	157, 403
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	6 cut(s)	16, 209, 297, 303, 380, 425
DpnII	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	2 cut(s)	52, 414
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	50
Eco88I	CYCGRG	2 cut(s)	406, 413
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	52, 414
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
FaeI	CATG	5 cut(s)	31, 178, 283, 359, 422
FaiI	YATR	8 cut(s)	29, 62, 176, 281, 309, 335, 357, 420
FatI	CATG	5 cut(s)	27, 174, 279, 355, 418
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	378
FblI	GTMKAC	2 cut(s)	144, 366
Fnu4HI	GCNGC	2 cut(s)	259, 284
FriOI	GRGCYC	2 cut(s)	52, 414
Fsp4HI	GCNGC	2 cut(s)	259, 284
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	259, 284
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	4 cut(s)	75, 140, 188, 289
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	2 cut(s)	137, 248
Hin1II	CATG	5 cut(s)	31, 178, 283, 359, 422
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	2 cut(s)	322, 367
HindII	GTYRAC	2 cut(s)	322, 367
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	4 cut(s)	75, 140, 188, 289
HphI	GGTGA	5 cut(s)	13, 130, 208, 388, 410
Hpy166II	GTNNAC	3 cut(s)	145, 322, 367
Hpy188III	TCNNGA	6 cut(s)	7, 100, 112, 151, 211, 299
Hpy8I	GTNNAC	3 cut(s)	145, 322, 367
Hpy99I	CGWCG	4 cut(s)	47, 250, 266, 368
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	264, 363
HpyCH4V	TGCA	2 cut(s)	133, 283
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 134, 184, 247, 267, 280, 289
HpySE526I	ACGT	2 cut(s)	264, 363
Hsp92I	GRCGYC	2 cut(s)	137, 248
Hsp92II	CATG	5 cut(s)	31, 178, 283, 359, 422
HspAI	GCGC	1 cut(s)	137
KasI	GGCGCC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
LmnI	GCTCC	2 cut(s)	47, 291
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	264, 363
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	6 cut(s)	16, 209, 297, 303, 380, 425
MboI	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	52, 414
Mly113I	GGCGCC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	118, 174, 184, 187, 388
MseI	TTAA	2 cut(s)	201, 450
MslI	CAYNNNNRTG	2 cut(s)	26, 374
MspI	CCGG	4 cut(s)	75, 140, 188, 289
MspR9I	CCNGG	2 cut(s)	75, 432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	7 cut(s)	56, 134, 184, 247, 267, 280, 289
NarI	GGCGCC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
NlaIII	CATG	5 cut(s)	31, 178, 283, 359, 422
NlaIV	GGNNCC	2 cut(s)	138, 186
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	3 cut(s)	31, 178, 283
PaeR7I	CTCGAG	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	260, 285
Ple19I	CGATCG	1 cut(s)	17
PluTI	GGCGCC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	138, 186
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	295
PvuI	CGATCG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	158, 404
RsaNI	GTAC	2 cut(s)	157, 403
RseI	CAYNNNNRTG	2 cut(s)	26, 374
SacI	GAGCTC	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	201, 450
SatI	GCNGC	2 cut(s)	259, 284
Sau3AI	GATC	6 cut(s)	14, 207, 295, 301, 378, 423
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	75, 432
SduI	GDGCHC	2 cut(s)	52, 414
SetI	ASST	8 cut(s)	52, 120, 198, 267, 272, 288, 366, 457
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	26, 374
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	3 cut(s)	92, 237, 258
SspDI	GGCGCC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	73, 430
TaiI	ACGT	2 cut(s)	267, 366
TaqI	TCGA	7 cut(s)	87, 111, 150, 206, 300, 366, 414
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	201, 450
Tru9I	TTAA	2 cut(s)	201, 450
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	3 cut(s)	31, 178, 283
XhoI	CTCGAG	1 cut(s)	413
XmiI	GTMKAC	2 cut(s)	144, 366
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.