Rh6CG192200

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000567
Physical Location & Seq
Forward (+)
31672715 .. 31674941
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG192200.1

Sequence Viewer

Length: 357 bp
ATGCCCAGACCCAACGACGGAGCTCCAAGTGCCCAAAACATAATCCCTGGCGACGGAATTGGACCGCTCGTAATGAACGCCGTCGAGCAGGTGATCGAGTACCTCGATCTGTTTGGTTTTGATGCAATTTATCAATGGAATACACTAGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACAAACTATGAGCTTACCTGAAGCATATACAGAGATTGTCTTGAATTTTCCATATAAGCTCTTCGGAAAATGTACAAAGAGTCTGCTTAATATCACACTTGTGAACGCAGCTGAATTTGTACAAAGCCATAGCAAAAATTGGTTTCGAGAAAAGAATAGCTCTCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

4.52

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 163
AciI CCGC 1 cut(s) 65
AcsI RAATTY 2 cut(s) 229, 299
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 3 cut(s) 101, 259, 306
AfiI CCNNNNNNNGG 2 cut(s) 17, 53
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 46
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 5 cut(s) 23, 198, 244, 296, 345
AluI AGCT 5 cut(s) 23, 198, 244, 296, 345
Alw21I GWGCWC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 2 cut(s) 229, 299
AspS9I GGNCC 2 cut(s) 62, 152
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 62, 152
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 2 cut(s) 146, 355
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 62, 152
BmgT120I GGNCC 2 cut(s) 62, 152
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 112, 169
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 53
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 17, 53
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 17, 53
Bsp1286I GDGCHC 2 cut(s) 25, 34
Bsp1407I TGTACA 2 cut(s) 257, 304
Bsp143I GATC 3 cut(s) 93, 106, 351
BspACI CCGC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 67
BsrGI TGTACA 2 cut(s) 257, 304
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 93, 106, 351
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 179
BstAUI TGTACA 2 cut(s) 257, 304
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 3 cut(s) 96, 109, 354
BstMBI GATC 3 cut(s) 93, 106, 351
BstMWI GCNNNNNNNGC 2 cut(s) 29, 179
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 62, 152
Csp6I GTAC 3 cut(s) 100, 258, 305
CviJI RGCY 6 cut(s) 23, 198, 244, 296, 312, 345
CviKI_1 RGCY 6 cut(s) 23, 198, 244, 296, 312, 345
CviQI GTAC 3 cut(s) 100, 258, 305
DpnI GATC 3 cut(s) 95, 108, 353
DpnII GATC 3 cut(s) 93, 106, 351
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 62, 152
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 8 cut(s) 41, 171, 194, 211, 213, 238, 240, 315
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 146, 355
GluI GCNGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 164, 289
Hpy188I TCNGA 2 cut(s) 251, 351
Hpy188III TCNNGA 2 cut(s) 226, 332
Hpy8I GTNNAC 2 cut(s) 164, 289
Hpy99I CGWCG 3 cut(s) 20, 56, 86
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 125, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 179
Kzo9I GATC 3 cut(s) 93, 106, 351
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 5 cut(s) 19, 33, 60, 74, 216
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 2 cut(s) 112, 169
MaeI CTAG 2 cut(s) 146, 355
MalI GATC 3 cut(s) 95, 108, 353
MbiI CCGCTC 1 cut(s) 67
MboI GATC 3 cut(s) 93, 106, 351
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 25, 34
MluCI AATT 5 cut(s) 57, 126, 229, 299, 322
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 113, 169
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 29, 179
NdeII GATC 3 cut(s) 93, 106, 351
OliI CACNNNNGTG 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 2 cut(s) 62, 152
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 3 cut(s) 101, 259, 306
RsaNI GTAC 3 cut(s) 100, 258, 305
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 93, 106, 351
Sau96I GGNCC 2 cut(s) 62, 152
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 2 cut(s) 25, 34
SetI ASST 9 cut(s) 25, 93, 105, 154, 200, 205, 246, 298, 347
SfaNI GCATC 2 cut(s) 112, 169
SinI GGWCC 2 cut(s) 62, 152
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 5 cut(s) 57, 126, 229, 299, 322
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 146, 355
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 46
TaqI TCGA 4 cut(s) 84, 96, 105, 331
TasI AATT 5 cut(s) 57, 126, 229, 299, 322
TatI WGTACW 2 cut(s) 257, 304
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 33, 69
VpaK11BI GGWCC 2 cut(s) 62, 152
XapI RAATTY 2 cut(s) 229, 299
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 2 cut(s) 146, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.