Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

5015850 .. 5016725

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTAGAGAAGTACGATGTCACCGGCAACATGCTGAGGGTGCCGGAGGAGGTGATTGAGTCAATCAGGAAGAACAAGATGTATCTGAAAGGCGGGCTGGCGACGCCGATGGGCGGCGGCGTTAGCTCGCTGAACATGCAGCTCTGGCAAGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATCTGCAAGGCTTACAGACCAAGCATGGCAACGTCGACATCCTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCCTGGAGTTGGTGAAAGCCTTAAAGTTAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

117

Amino Acids

13.0

Weight (kDa)

4.7

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	15 - 110	5.3e-15	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	25, 73
AccI	GTMKAC	2 cut(s)	33, 255
AciI	CCGC	3 cut(s)	126, 147, 150
AcyI	GRCGYC	2 cut(s)	26, 137
AfaI	GTAC	2 cut(s)	47, 293
AfiI	CCNNNNNNNGG	2 cut(s)	146, 326
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	261, 319
AluBI	AGCT	2 cut(s)	159, 175
AluI	AGCT	2 cut(s)	159, 175
Alw21I	GWGCWC	1 cut(s)	309
Ama87I	CYCGRG	2 cut(s)	295, 302
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	6 cut(s)	19, 46, 97, 277, 299, 341
AvaI	CYCGRG	2 cut(s)	295, 302
BanI	GGYRCC	2 cut(s)	25, 73
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	4, 136
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	2 cut(s)	263, 321
BclI	TGATCA	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	29
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	148, 151, 173
BlsI	GCNGC	3 cut(s)	149, 152, 174
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	263, 321
BmeT110I	CYCGRG	2 cut(s)	295, 302
BmiI	GGNNCC	2 cut(s)	27, 75
BmrFI	CCNGG	2 cut(s)	263, 321
BmsI	GCATC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	189
BsaHI	GRCGYC	2 cut(s)	26, 137
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 326
Bse118I	RCCGGY	2 cut(s)	28, 56
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	263, 321
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	146, 326
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	184
BshNI	GGYRCC	2 cut(s)	25, 73
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	2 cut(s)	295, 302
BsiSI	CCGG	3 cut(s)	29, 57, 77
BslI	CCNNNNNNNGG	2 cut(s)	146, 326
BsoBI	CYCGRG	2 cut(s)	295, 302
Bsp1286I	GDGCHC	2 cut(s)	303, 309
Bsp143I	GATC	4 cut(s)	184, 190, 267, 312
BspACI	CCGC	3 cut(s)	126, 147, 150
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	27, 75
BspT107I	GGYRCC	2 cut(s)	25, 73
BsrFI	RCCGGY	2 cut(s)	28, 56
BssAI	RCCGGY	2 cut(s)	28, 56
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	184, 190, 267, 312
BssNI	GRCGYC	2 cut(s)	26, 137
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	263, 321
BstACI	GRCGYC	2 cut(s)	26, 137
BstC8I	GCNNGC	4 cut(s)	24, 128, 132, 161
BstDEI	CTNAG	2 cut(s)	37, 68
BstF5I	GGATG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	187, 193, 270, 315
BstMBI	GATC	4 cut(s)	184, 190, 267, 312
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 73, 136, 156, 169, 178
BstNI	CCWGG	2 cut(s)	263, 321
BstNSI	RCATGY	2 cut(s)	67, 172
BstSCI	CCNGG	2 cut(s)	261, 319
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	24, 128, 132, 161
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	2 cut(s)	28, 56
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	46, 292
CviAII	CATG	3 cut(s)	64, 169, 245
CviJI	RGCY	6 cut(s)	130, 159, 175, 231, 301, 336
CviKI_1	RGCY	6 cut(s)	130, 159, 175, 231, 301, 336
CviQI	GTAC	2 cut(s)	46, 292
DdeI	CTNAG	2 cut(s)	37, 68
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	4 cut(s)	186, 192, 269, 314
DpnII	GATC	4 cut(s)	184, 190, 267, 312
Eco24I	GRGCYC	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	295, 302
EcoRII	CCWGG	2 cut(s)	261, 319
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
FaeI	CATG	3 cut(s)	67, 172, 248
FaiI	YATR	4 cut(s)	65, 170, 198, 246
FatI	CATG	3 cut(s)	63, 168, 244
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	2 cut(s)	33, 255
Fnu4HI	GCNGC	3 cut(s)	148, 151, 173
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	148, 151, 173
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	148, 151, 173
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	29
HapII	CCGG	3 cut(s)	29, 57, 77
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	2 cut(s)	26, 137
Hin1II	CATG	3 cut(s)	67, 172, 248
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	3 cut(s)	211, 256, 346
HindII	GTYRAC	3 cut(s)	211, 256, 346
HinfI	GANTC	1 cut(s)	92
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	3 cut(s)	29, 57, 77
HphI	GGTGA	6 cut(s)	19, 46, 97, 277, 299, 341
Hpy166II	GTNNAC	4 cut(s)	34, 211, 256, 346
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	100, 188
Hpy8I	GTNNAC	4 cut(s)	34, 211, 256, 346
Hpy99I	CGWCG	2 cut(s)	139, 257
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	22, 172, 226
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 73, 136, 156, 169, 178
HpyF3I	CTNAG	2 cut(s)	37, 68
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	26, 137
Hsp92II	CATG	3 cut(s)	67, 172, 248
HspAI	GCGC	1 cut(s)	26
KasI	GGCGCC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	184, 190, 267, 312
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	9
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	4 cut(s)	186, 192, 269, 314
MboI	GATC	4 cut(s)	184, 190, 267, 312
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	303, 309
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	5 cut(s)	7, 63, 73, 76, 277
MseI	TTAA	3 cut(s)	339, 345, 352
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	3 cut(s)	29, 57, 77
MspR9I	CCNGG	2 cut(s)	263, 321
MvaI	CCWGG	2 cut(s)	263, 321
MwoI	GCNNNNNNNGC	6 cut(s)	23, 73, 136, 156, 169, 178
NarI	GGCGCC	1 cut(s)	26
NdeII	GATC	4 cut(s)	184, 190, 267, 312
NlaIII	CATG	3 cut(s)	67, 172, 248
NlaIV	GGNNCC	2 cut(s)	27, 75
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	67, 172
PaeR7I	CTCGAG	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	149, 152, 174
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	261, 319
PspGI	CCWGG	2 cut(s)	261, 319
PspN4I	GGNNCC	2 cut(s)	27, 75
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	47, 293
RsaNI	GTAC	2 cut(s)	46, 292
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	339, 345, 352
SatI	GCNGC	3 cut(s)	148, 151, 173
Sau3AI	GATC	4 cut(s)	184, 190, 267, 312
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	263, 321
SduI	GDGCHC	2 cut(s)	303, 309
SetI	ASST	5 cut(s)	9, 87, 161, 177, 255
SfaNI	GCATC	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SsiI	CCGC	3 cut(s)	126, 147, 150
SspDI	GGCGCC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	261, 319
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	189, 255, 303
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	150, 153
Tru1I	TTAA	3 cut(s)	339, 345, 352
Tru9I	TTAA	3 cut(s)	339, 345, 352
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	52
XceI	RCATGY	2 cut(s)	67, 172
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	2 cut(s)	33, 255
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.