Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002271.1

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

91066 .. 91497

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002271.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcccccacccagagacggagctctgggtgccgtaaccaaaatccccggcgatggaatcgaaccgctagtcacgatcgctgtcgagaaggtgatggaggcgatgcaggcgccggtctacttcgagaagtacgatgtcaccggcaacatgctgagggtgtcggatgaggtgattgagtcgatcaggaagaacaagatgtgtctgaaaggcgggctggcgactccgatgggcggcggcgttagctcgctgaacatgcagctccggcgagatctcgatctctatgcttcgttggtcaactgcttcaatctgcgtggcttacagaccaagcatggcaacgtcgacattctggtgatcagggagaacaccgagggtagtactcggggctcgagcacgagatcattcctggagttgttgaaagccttaaaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

143

Amino Acids

15.56

Weight (kDa)

8.6

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 109
AccI	GTMKAC	2 cut(s)	117, 339
AciI	CCGC	4 cut(s)	65, 210, 231, 234
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	131, 376
AfiI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
AgsI	TTSAA	2 cut(s)	304, 415
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	23, 243, 259
AluI	AGCT	3 cut(s)	23, 243, 259
Alw21I	GWGCWC	2 cut(s)	25, 392
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	2 cut(s)	378, 385
ApeKI	GCWGC	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	4 cut(s)	103, 130, 181, 361
AvaI	CYCGRG	2 cut(s)	378, 385
BanI	GGYRCC	2 cut(s)	29, 109
BanII	GRGCYC	2 cut(s)	25, 386
BauI	CACGAG	1 cut(s)	391
Bbv12I	GWGCWC	2 cut(s)	25, 392
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	47, 88, 220
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	232, 235, 257
BlsI	GCNGC	3 cut(s)	233, 236, 258
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	48, 404
BmeT110I	CYCGRG	2 cut(s)	378, 385
BmiI	GGNNCC	2 cut(s)	31, 111
BmrFI	CCNGG	2 cut(s)	48, 404
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	46, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 53, 230
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	46, 366
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	78
BshNI	GGYRCC	2 cut(s)	29, 109
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	25, 392
BsiHKCI	CYCGRG	2 cut(s)	378, 385
BsiSI	CCGG	4 cut(s)	48, 113, 141, 262
BslI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsoBI	CYCGRG	2 cut(s)	378, 385
Bsp1286I	GDGCHC	3 cut(s)	25, 386, 392
Bsp143I	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
BspACI	CCGC	4 cut(s)	65, 210, 231, 234
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	31, 111
BspT107I	GGYRCC	2 cut(s)	29, 109
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	2 cut(s)	46, 366
BssMI	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
BssNI	GRCGYC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	4 cut(s)	108, 212, 216, 245
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	6 cut(s)	78, 183, 271, 277, 354, 398
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 107, 240, 253, 262
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	2 cut(s)	46, 402
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgZI	GCGATG	2 cut(s)	66, 116
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	4 cut(s)	108, 212, 216, 245
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
Csp6I	GTAC	2 cut(s)	130, 375
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	3 cut(s)	148, 253, 329
CviJI	RGCY	7 cut(s)	23, 214, 243, 259, 315, 384, 419
CviKI_1	RGCY	7 cut(s)	23, 214, 243, 259, 315, 384, 419
CviQI	GTAC	2 cut(s)	130, 375
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	6 cut(s)	77, 182, 270, 276, 353, 397
DpnII	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	25, 386
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	378, 385
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	25, 386
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	3 cut(s)	151, 256, 332
FaiI	YATR	5 cut(s)	149, 254, 282, 330, 430
FatI	CATG	3 cut(s)	147, 252, 328
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	2 cut(s)	117, 339
Fnu4HI	GCNGC	3 cut(s)	232, 235, 257
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	2 cut(s)	25, 386
Fsp4HI	GCNGC	3 cut(s)	232, 235, 257
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	232, 235, 257
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	4 cut(s)	48, 113, 141, 262
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	151, 256, 332
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	295, 340
HindII	GTYRAC	2 cut(s)	295, 340
HinfI	GANTC	3 cut(s)	57, 176, 220
HpaII	CCGG	4 cut(s)	48, 113, 141, 262
HphI	GGTGA	4 cut(s)	103, 130, 181, 361
Hpy166II	GTNNAC	3 cut(s)	118, 295, 340
Hpy188I	TCNGA	3 cut(s)	163, 204, 225
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 272
Hpy8I	GTNNAC	3 cut(s)	118, 295, 340
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	106, 256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 107, 240, 253, 262
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	151, 256, 332
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
LmnI	GCTCC	2 cut(s)	20, 264
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	6 cut(s)	77, 182, 270, 276, 353, 397
MboI	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	3 cut(s)	25, 386, 392
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	185, 214
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	91, 147, 160, 361
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	4 cut(s)	48, 113, 141, 262
MspR9I	CCNGG	2 cut(s)	48, 404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	5 cut(s)	29, 107, 240, 253, 262
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
NlaIII	CATG	3 cut(s)	151, 256, 332
NlaIV	GGNNCC	2 cut(s)	31, 111
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PaeR7I	CTCGAG	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	233, 236, 258
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	2 cut(s)	184, 214
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	2 cut(s)	184, 214
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	31, 111
PspXI	VCTCGAGB	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	131, 376
RsaNI	GTAC	2 cut(s)	130, 375
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	3 cut(s)	232, 235, 257
Sau3AI	GATC	6 cut(s)	75, 180, 268, 274, 351, 395
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	2 cut(s)	185, 214
ScrFI	CCNGG	2 cut(s)	48, 404
SduI	GDGCHC	3 cut(s)	25, 386, 392
SetI	ASST	7 cut(s)	25, 93, 171, 245, 261, 339, 429
SfaNI	GCATC	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SsiI	CCGC	4 cut(s)	65, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	46, 402
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	7 cut(s)	60, 84, 123, 179, 273, 339, 386
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
XceI	RCATGY	2 cut(s)	151, 256
XhoI	CTCGAG	1 cut(s)	385
XmiI	GTMKAC	2 cut(s)	117, 339
XspI	CTAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.