Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

1436447 .. 1436798

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGACAAGGACTATCCATTATGCAAGCTCTGCAATACATATGGAGGCCGAGGCTCTTCGGGCTGGATTATTGCTTGCTATTCATGAATGCTTCACTGAAGTGGAATTCGAGAGTGATTGTGCTACGCTTGTTATCCTCATGTCAAAGGAGGAGGATGATTTCTCACCAATTGGTCGGGTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

61

Amino Acids

6.76

Weight (kDa)

4.59

Isoelectric Point (pI)

69.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	4 - 57	2.5e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	117
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
AoxI	GGCC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	25, 75
BstF5I	GGATG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 59
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	25, 75
CciI	TCATGA	1 cut(s)	82
CviAII	CATG	2 cut(s)	83, 139
CviJI	RGCY	4 cut(s)	27, 47, 53, 62
CviKI_1	RGCY	4 cut(s)	27, 47, 53, 62
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	86, 142
FaiI	YATR	5 cut(s)	21, 39, 41, 84, 140
FatI	CATG	2 cut(s)	82, 138
FauNDI	CATATG	1 cut(s)	39
FokI	GGATG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	86, 142
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	2 cut(s)	83, 109
HpyCH4V	TGCA	2 cut(s)	23, 32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 59
Hsp92II	CATG	2 cut(s)	86, 142
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	48
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	2 cut(s)	104, 168
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	37, 43, 142, 145, 146
MslI	CAYNNNNRTG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	29, 59
NdeI	CATATG	1 cut(s)	39
NlaIII	CATG	2 cut(s)	86, 142
NmeAIII	GCCGAG	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	60
SetI	ASST	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	104, 168
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	104, 168
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	71, 99
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.