Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

64611452 .. 64612986

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG456400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCGAGGGTGCCAGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTCTGAAACGCGGGCTGGAGACGCCAATGGGCGGGGGCGTTAGCTCGCTGAACATGCAGCTCCAGCGAGATCTCGATCTCTATGCTTCGTTGGTCAACTACTTCAATCTGCGTGGCTTACAGACCAAGCATGGCAACGTCGACATTCTGGTGATCAGGGAGAGCACCGAGGTTGTGTTGGTAAATTTATGTTGGTTATTTGATGATAACTTGAATATATCTGAGTGTAAGCAGCTGTCAAAGGAGGAAAGACGTGAGGCACGGCACGCTAAAAAGAAATTGAAGAAGGGACTTTACAAGGGTGAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

120

Amino Acids

13.82

Weight (kDa)

9.22

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	4 - 74	4e-06	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	63
AciI	CCGC	2 cut(s)	63, 84
AcsI	RAATTY	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	157, 265, 334
AjiI	CACGTC	1 cut(s)	305
AluBI	AGCT	3 cut(s)	96, 112, 286
AluI	AGCT	3 cut(s)	96, 112, 286
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	109, 283
ApoI	RAATTY	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	34, 214
BanI	GGYRCC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	121, 295
BceAI	ACGGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	110, 284
BlsI	GCNGC	2 cut(s)	111, 285
BmgBI	CACGTC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	12
BpmI	CTGGAG	2 cut(s)	89, 98
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	5, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	5, 219
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	121, 295
Bsh1236I	CGCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	33, 121, 127, 204
BspACI	CCGC	2 cut(s)	63, 84
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	5, 219
BssMI	GATC	4 cut(s)	33, 121, 127, 204
BssNI	GRCGYC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	65, 98, 318
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	36, 124, 130, 207
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	33, 121, 127, 204
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 73, 106, 115, 317
BstNSI	RCATGY	1 cut(s)	109
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	121, 295
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	65, 98, 318
CseI	GACGC	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	2 cut(s)	106, 182
CviJI	RGCY	5 cut(s)	67, 96, 112, 168, 286
CviKI_1	RGCY	5 cut(s)	67, 96, 112, 168, 286
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	4 cut(s)	35, 123, 129, 206
DpnII	GATC	4 cut(s)	33, 121, 127, 204
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	109, 185
FaiI	YATR	5 cut(s)	107, 135, 183, 241, 269
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	105, 181
FauI	CCCGC	2 cut(s)	56, 77
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	110, 284
Fsp4HI	GCNGC	2 cut(s)	110, 284
GluI	GCNGC	2 cut(s)	110, 284
GsuI	CTGGAG	2 cut(s)	89, 98
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	109, 185
HincII	GTYRAC	2 cut(s)	148, 193
HindII	GTYRAC	2 cut(s)	148, 193
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	2 cut(s)	34, 214
Hpy166II	GTNNAC	2 cut(s)	148, 193
Hpy188I	TCNGA	2 cut(s)	57, 274
Hpy188III	TCNNGA	2 cut(s)	37, 125
Hpy8I	GTNNAC	2 cut(s)	148, 193
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	189, 304
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 73, 106, 115, 317
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	189, 304
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	109, 185
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	33, 121, 127, 204
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	6 cut(s)	22, 27, 53, 128, 185, 193
Lsp1109I	GCAGC	2 cut(s)	121, 295
MaeII	ACGT	2 cut(s)	189, 304
MalI	GATC	4 cut(s)	35, 123, 129, 206
MboI	GATC	4 cut(s)	33, 121, 127, 204
MboII	GAAGA	2 cut(s)	52, 346
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	2 cut(s)	235, 329
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	10, 13, 214, 289, 301
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	10, 73, 106, 115, 317
NdeII	GATC	4 cut(s)	33, 121, 127, 204
NlaIII	CATG	2 cut(s)	109, 185
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	111, 285
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	110, 284
Sau3AI	GATC	4 cut(s)	33, 121, 127, 204
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	7 cut(s)	24, 98, 114, 192, 225, 288, 307
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	235, 329
SsiI	CCGC	2 cut(s)	63, 84
TaiI	ACGT	2 cut(s)	192, 307
TaqI	TCGA	3 cut(s)	32, 126, 192
TasI	AATT	2 cut(s)	235, 329
TseI	GCWGC	2 cut(s)	109, 283
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.