Rh5AG506600

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000567
Physical Location & Seq
Reverse (-)
85685042 .. 85685389
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG506600.1

Sequence Viewer

Length: 348 bp
ATGAACAGATTCATCCTCTTGAGTAAAGATATTTATTATCATGCTGAAGAGTGTAATTTTCTCTTTTGCAACAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATGCTTCCAACCAATGTCAGTGTAGTAGTATGGCCGATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACCTGAAGGTATACTTGCAATGTATAATGTTTTTCCTTGTTTAGTATTGTCAATAACAAACTATCTTGATGATATGAACATGCAAGTGACCTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

115

Amino Acids

13.27

Weight (kDa)

4.87

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 211, 259
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 2 cut(s) 66, 273
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 2 cut(s) 88, 246
AluI AGCT 2 cut(s) 88, 246
AoxI GGCC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 152
BseGI GGATG 2 cut(s) 12, 232
BseJI GATNNNNATC 1 cut(s) 152
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 198
BshFI GGCC 1 cut(s) 145
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 100
BssNAI GTATAC 1 cut(s) 260
Bst1107I GTATAC 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 227
BstF5I GGATG 2 cut(s) 12, 232
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 12, 232
BtsIMutI CAGTG 3 cut(s) 136, 172, 191
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 4 cut(s) 41, 112, 184, 328
CviJI RGCY 3 cut(s) 88, 145, 246
CviKI_1 RGCY 3 cut(s) 88, 145, 246
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 66, 273
FaeI CATG 4 cut(s) 44, 115, 187, 331
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 4 cut(s) 40, 111, 183, 327
FblI GTMKAC 2 cut(s) 211, 259
FokI GGATG 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 4 cut(s) 44, 115, 187, 331
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 3 cut(s) 9, 148, 162
Hpy166II GTNNAC 2 cut(s) 212, 260
Hpy188III TCNNGA 3 cut(s) 19, 157, 314
Hpy8I GTNNAC 2 cut(s) 212, 260
HpyAV CCTTC 2 cut(s) 191, 248
HpyCH4V TGCA 5 cut(s) 69, 98, 221, 266, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Hsp92II CATG 4 cut(s) 44, 115, 187, 331
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 142, 179, 264
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 100
MluCI AATT 2 cut(s) 55, 78
MmeI TCCRAC 2 cut(s) 143, 227
MnlI CCTC 2 cut(s) 26, 217
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 84, 90
MslI CAYNNNNRTG 1 cut(s) 332
MspCI CTTAAG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 100
NlaIII CATG 4 cut(s) 44, 115, 187, 331
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 9, 148, 162
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 84, 90
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 200
SetI ASST 7 cut(s) 78, 90, 202, 248, 253, 259, 341
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 19, 89
SmoI CTYRAG 2 cut(s) 19, 89
Sse9I AATT 2 cut(s) 55, 78
TasI AATT 2 cut(s) 55, 78
TfiI GAWTC 3 cut(s) 9, 148, 162
Tru1I TTAA 2 cut(s) 84, 90
Tru9I TTAA 2 cut(s) 84, 90
TscAI CASTG 3 cut(s) 136, 172, 198
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 17, 200, 338
TspRI CASTG 3 cut(s) 136, 172, 198
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 2 cut(s) 211, 259
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.