Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

50247324 .. 50248028

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCAATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGCTGGCGATGCCGATGGGCGGCGACGTTAGCTCGCTGAACATACAGCTCCGGCGAGATCTCGATCTCTATGCTTCATTGGTCAACTGCTTCAATCTGCGTGGCTTACAGACCAAGCATGGCAACGTCGACATTCTAGTGATCACGGAGAACACCGAGGGTGAGTACTCGGGGCTTGAGCAAGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGGTATAAACAATGCAATTCTGAAATGTAAAATTCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

106

Amino Acids

11.77

Weight (kDa)

6.57

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	4 - 88	6.3e-12	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	63, 84
AcsI	RAATTY	1 cut(s)	309
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	157, 269
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	96, 112
AluI	AGCT	2 cut(s)	96, 112
Ama87I	CYCGRG	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	34, 236
AvaI	CYCGRG	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	10
BccI	CCATC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	5, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	5, 219
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	14, 115
BslI	CCNNNNNNNGG	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	121, 127, 204, 249
BspACI	CCGC	2 cut(s)	63, 84
BspLI	GGNNCC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	5, 219
BssMI	GATC	4 cut(s)	121, 127, 204, 249
Bst2UI	CCWGG	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	65, 69, 98
BstKTI	GATC	4 cut(s)	124, 130, 207, 252
BstMBI	GATC	4 cut(s)	121, 127, 204, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 73, 93
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	65, 69, 98
Csp6I	GTAC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	6 cut(s)	67, 96, 112, 168, 238, 273
CviKI_1	RGCY	6 cut(s)	67, 96, 112, 168, 238, 273
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	4 cut(s)	123, 129, 206, 251
DpnII	GATC	4 cut(s)	121, 127, 204, 249
Eco88I	CYCGRG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	185
FaiI	YATR	4 cut(s)	107, 135, 183, 284
FatI	CATG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	2 cut(s)	14, 115
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	2 cut(s)	148, 193
HindII	GTYRAC	2 cut(s)	148, 193
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	14, 115
HphI	GGTGA	2 cut(s)	34, 236
Hpy166II	GTNNAC	2 cut(s)	148, 193
Hpy188I	TCNGA	2 cut(s)	57, 300
Hpy188III	TCNNGA	2 cut(s)	37, 125
Hpy8I	GTNNAC	2 cut(s)	148, 193
Hpy99I	CGWCG	2 cut(s)	92, 194
HpyCH4IV	ACGT	2 cut(s)	90, 189
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 73, 93
HpySE526I	ACGT	2 cut(s)	90, 189
Hsp92II	CATG	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	121, 127, 204, 249
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	6 cut(s)	22, 27, 53, 128, 243, 270
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	90, 189
MalI	GATC	4 cut(s)	123, 129, 206, 251
MboI	GATC	4 cut(s)	121, 127, 204, 249
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	294, 309
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	3 cut(s)	10, 13, 214
MseI	TTAA	2 cut(s)	276, 319
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	2 cut(s)	14, 115
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	10, 73, 93
NdeII	GATC	4 cut(s)	121, 127, 204, 249
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	276, 319
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	4 cut(s)	121, 127, 204, 249
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	6 cut(s)	24, 93, 98, 114, 192, 283
SfaNI	GCATC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	294, 309
SsiI	CCGC	2 cut(s)	63, 84
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	256
TaiI	ACGT	2 cut(s)	93, 192
TaqI	TCGA	2 cut(s)	126, 192
TasI	AATT	2 cut(s)	294, 309
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	276, 319
Tru9I	TTAA	2 cut(s)	276, 319
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	224
XapI	RAATTY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.