Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

6012343 .. 6017756

Gene Structure 5414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGGCAGAACCGATGTCGGAGCAGATAGTCTATCTGCATGGCGACCTTGACCTCAAAATCCTCGAGGCGAGGCGGTTACCGAATATGGACCTCTTCTCCGAGCGGCTCCGCCGCTGCTTCACCGCCTGCGACACCATCAACTGCTCTCGCTCTCGCTCCAAGAAGCCTCCGCAGTCGGTCGACGACAGCAAGATTTCTCACCACCGGAATATCATGACCAGCGACTCTTACGTCAAAGTCTGCGTGCCTCAGGCAACGGTGGCGCGTACGCGCGTCATTAAGAACTCTCAGAATCCTCAATGGCGCGAGACCTTTTGCATCCCGCTCGCGCATCCTGCGGCCAAACTTGAATTTCAGGTGAAAGATAACGACGTCTTCGGCGCTCAGATGATTGGAACCGCCTCCATCTCCGCGGAGAGAATCGCCACCGGAGAAGTGATTTCCGGCTGGTTTGACATTATCGGACCTACTGGAAAGCCTCCGAAGCCTCCTTGCGCGATCAAGGTCGAGTTGAAGTTCACTCCTTTCGAGAAAAACCCGGTCTACAAGCACGGCATAGCCGGCGATCCAGCACGGAAGGGAGTCTCCAACACCTACTTTCCTCTGAGAAAAGGCAGTCACGTGCGGCTCTACCAGGATGCGCACGTGCCGGAGGGGCTGCTGCCGCAAATTGAATTGGACGGAAGAAAAGTTTATAAGCCTGAGCATTGCTGGGAGGATCTTTGCTATGCGATTTCGGAGGCTCACCATATGATATATGTGGTTGGATGGTCTGTGTTTCACAAAGTGAGGCTGGTTAGAGAGCCGACCCGGCCGTTGCCACGCGGCGGCGACTTAACGCTAGGAGAGTTTCTCAAGTATAAATCAGAAGAAGGTGTACGGGTGTTGATGCTGGTCTGGAATGATAAGACATCCAACGACGTCTACTCGGCAGGAATGATGGGAACGCATGATGAAGAAACCCGGAAGTTTTTCAAGAATTCATCTGTCACTTGTGTTCTGGCCCCTCGCTATGGCAGTAGTAAGCTTAGCATTATAAAACAAAAGGTTGTTGGAACCGTCTTTACACACCATCAAAAATGTGTTATTGTGGACACACAAGCATCTGGTAATAACCGCAAGATAACCGCATTTTTAGGAGGGCTTGATATCTGTGATGGCCGTTATGACACACATGAGCACAGATTGTTTCACGATGTTGACACTGTGTTTAAAGATGATTTTCATCAAATTTCCATTCCTAATTTGACGGCTGGGACCAAGGCTCCAAGGCAACCATGGCATGACTTGCACTGTAGAATTGACGGGCCTGCTGCATATGATGTTCTTATAAATTTTGAGCAACGATGGAGGAAAACCACACGATTTAGAGATTTTGGACAATGTAAAAGGGTGTCTCATTGGCATGATTCTTTACTTAAGATAGGCCGTATTTCATGGATACTTAGTCCTGAGATGTCAGATTCAGAGGAATTTACAATTATTCCCAAAGAAGACCCAGCTTTATGGGTTCAGAGAGAAGATGATCCTGAAGATTGGAATGTCCAGATTTTCCGGTCTATTGACTCAGGATCGCTGAATGGATTTCCCAAAGATGTCATTGTTGCTGCGTCACAGAACCTGATTTGCTCAAAGGATCTAGTAATAGATAAAAGCATTCAGACAGCGTACATCAAGGCAATCAGATCCGCCCAACATTTCATATATATTGAAAATCAGTATTTTCTTGGTTCATCATATGCATGGCCAGATTATAAAGATGCAGGAGCTGACAATCTGATTCCAATTGAGTTGGCACTGAAGATTGCCAGCAAAATCAGAGCTAATGAGAGATTTGCGGTGTATATAGTTGTACCTATGTGGCCTGAAGGTCATCCGAATTCTGGTGCAATGCAAGAAATTCTCTACTGGCAGAGCCAGACAATGCAAATGATGTATGATATTGTTGCACGAGAACTGAAAGCCTTGCAGCTTCAAGATTCACATCCTCAAGATTTCCTCAATTTCTATTGCCTTGGTAAACGGGAAAAAGTTCCTCAGGAAACATCAAACAACAAGGAGGCTATGATCTGCGAGTCATACAAGAATCAGCGCTTTATGATTTATGTTCATGCCAAGGGTATGATAGTGGATGACGAGTACGTCATACTGGGATCAGCCAATATTAACCAAAGATCAATGGCTGGTACGAAAGACACTGAGATAGCTATGGGGGCGTATCAACCCCATCACACTTGGGCTGAGAAGCAGAGACATCCTTGTGGTCAAATATATGGGTATCGAATGTCACTCTGGGCTGAGCATCTTGGTATGTTGGACACATGCTTTAAAGAGGCAGAGAGTTTGGAAACTGTGAGGACTGTGAATGGCATTGCTGAAGAAAACTGGAGGAGATACACATCACCGGATTTCACAGAACTGCAGGGTCACCTTCTCAGGTATCCGTTGCTGGTAAGGGCTGATGGTAAGGTGGAACCTCTGCCAGGATATGAAAATTTCCCTGATGTTGGCGGCAAAGTTATCGGAGCTCATACTATTAAAATTCCTGATCAATTCACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

855

Amino Acids

97.46

Weight (kDa)

7.19

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	65 - 152	2.6e-17	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	696, 1037, 1331, 1755
AasI	GACNNNNNNGTC	2 cut(s)	230, 2141
AatII	GACGTC	2 cut(s)	375, 924
AbsI	CCTCGAGG	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	642
AccBSI	CCGCTC	2 cut(s)	103, 325
AccI	GTMKAC	3 cut(s)	180, 543, 924
AccII	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
AclWI	GGATC	7 cut(s)	560, 726, 1520, 1579, 1644, 1680, 2161
AcoI	YGGCCR	4 cut(s)	339, 812, 1159, 1745
AcsI	RAATTY	9 cut(s)	350, 979, 1230, 1333, 1472, 1879, 1899, 2494, 2541
AcuI	CTGAAG	4 cut(s)	1551, 1820, 1887, 2397
AcvI	CACGTG	2 cut(s)	622, 646
AcyI	GRCGYC	2 cut(s)	372, 921
AdeI	CACNNNGTG	1 cut(s)	787
AfaI	GTAC	6 cut(s)	268, 879, 1670, 1854, 2141, 2188
AfeI	AGCGCT	1 cut(s)	2093
AfiI	CCNNNNNNNGG	5 cut(s)	827, 1013, 1883, 2483, 2507
AflII	CTTAAG	1 cut(s)	1418
AgsI	TTSAA	6 cut(s)	350, 514, 674, 976, 1712, 1976
AjnI	CCWGG	2 cut(s)	633, 2482
AluBI	AGCT	7 cut(s)	1027, 1502, 1769, 1823, 1972, 2207, 2528
AluI	AGCT	7 cut(s)	1027, 1502, 1769, 1823, 1972, 2207, 2528
Alw21I	GWGCWC	2 cut(s)	1182, 2530
Alw26I	GTCTC	4 cut(s)	302, 589, 1401, 2245
AlwI	GGATC	7 cut(s)	560, 726, 1520, 1579, 1644, 1680, 2161
AlwNI	CAGNNNCTG	2 cut(s)	1621, 1769
Ama87I	CYCGRG	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	2093
AoxI	GGCC	8 cut(s)	339, 812, 1002, 1159, 1307, 1426, 1745, 1862
ApeKI	GCWGC	6 cut(s)	114, 658, 661, 1313, 1607, 1969
ApoI	RAATTY	9 cut(s)	350, 979, 1230, 1333, 1472, 1879, 1899, 2494, 2541
Asp700I	GAANNNNTTC	2 cut(s)	971, 2031
AspLEI	GCGC	8 cut(s)	265, 273, 306, 331, 383, 497, 643, 2094
AspS9I	GGNCC	5 cut(s)	88, 464, 1003, 1257, 1307
AsuC2I	CCSGG	3 cut(s)	539, 811, 964
AsuHPI	GGTGA	6 cut(s)	112, 191, 370, 737, 2394, 2420
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	3 cut(s)	88, 464, 1257
AxyI	CCTNAGG	2 cut(s)	249, 2037
BalI	TGGCCA	1 cut(s)	1747
BanII	GRGCYC	1 cut(s)	2530
BarI	GAAGNNNNNNTAC	2 cut(s)	861, 893
BauI	CACGAG	1 cut(s)	1950
BbrPI	CACGTG	2 cut(s)	622, 646
BbsI	GAAGAC	2 cut(s)	367, 1500
Bbv12I	GWGCWC	2 cut(s)	1182, 2530
BbvI	GCAGC	6 cut(s)	101, 645, 648, 1300, 1594, 1981
BccI	CCATC	9 cut(s)	143, 413, 762, 934, 1080, 1151, 1341, 2235, 2456
BceAI	ACGGC	5 cut(s)	568, 799, 1146, 1266, 1413
BcgI	CGANNNNNNTGC	4 cut(s)	307, 341, 2503, 2537
BciT130I	CCWGG	2 cut(s)	635, 2484
BciVI	GTATCC	2 cut(s)	1434, 2451
BclI	TGATCA	1 cut(s)	2548
BcnI	CCSGG	3 cut(s)	539, 811, 964
BcoDI	GTCTC	4 cut(s)	302, 589, 1401, 2245
BfaI	CTAG	2 cut(s)	842, 1640
BfmI	CTRYAG	2 cut(s)	1294, 2420
BfoI	RGCGCY	2 cut(s)	384, 2095
BfrI	CTTAAG	1 cut(s)	1418
BfuI	GTATCC	2 cut(s)	1434, 2451
BglI	GCCNNNNNGGC	2 cut(s)	655, 811
BlpI	GCTNAGC	2 cut(s)	1028, 2298
Bme1390I	CCNGG	5 cut(s)	539, 635, 811, 964, 2484
Bme18I	GGWCC	3 cut(s)	88, 464, 1257
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	88, 464, 1003, 1257, 1307
BmiI	GGNNCC	7 cut(s)	107, 397, 1005, 1057, 1258, 1266, 2475
BmrFI	CCNGG	5 cut(s)	539, 635, 811, 964, 2484
BmrI	ACTGGG	1 cut(s)	2159
BmsI	GCATC	7 cut(s)	327, 340, 628, 879, 1112, 1750, 2311
BmuI	ACTGGG	1 cut(s)	2159
BpiI	GAAGAC	2 cut(s)	367, 1500
BplI	GAGNNNNNCTC	2 cut(s)	837, 869
BpmI	CTGGAG	1 cut(s)	2407
Bpu10I	CCTNAGC	1 cut(s)	702
Bpu1102I	GCTNAGC	2 cut(s)	1028, 2298
BpuEI	CTTGAG	2 cut(s)	839, 1974
BpuMI	CCSGG	3 cut(s)	539, 811, 964
BsaAI	YACGTR	2 cut(s)	622, 646
BsaBI	GATNNNNATC	3 cut(s)	1224, 1983, 2398
BsaHI	GRCGYC	2 cut(s)	372, 921
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	6 cut(s)	411, 1260, 1268, 1277, 2014, 2115
BsaWI	WCCGGW	4 cut(s)	204, 428, 1554, 2404
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 1249, 1279
Bsc4I	CCNNNNNNNGG	5 cut(s)	827, 1013, 1883, 2483, 2507
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	4 cut(s)	475, 1913, 2154, 2390
Bse21I	CCTNAGG	2 cut(s)	249, 2037
Bse3DI	GCAATG	3 cut(s)	706, 1896, 2370
Bse8I	GATNNNNATC	3 cut(s)	1224, 1983, 2398
BseBI	CCWGG	2 cut(s)	635, 2484
BseDI	CCNNGG	6 cut(s)	411, 1260, 1268, 1277, 2014, 2115
BseGI	GGATG	9 cut(s)	318, 331, 643, 773, 911, 1873, 1984, 2137, 2254
BseJI	GATNNNNATC	3 cut(s)	1224, 1983, 2398
BseLI	CCNNNNNNNGG	5 cut(s)	827, 1013, 1883, 2483, 2507
BseMI	GCAATG	3 cut(s)	706, 1896, 2370
BseNI	ACTGG	4 cut(s)	475, 1913, 2154, 2390
BseRI	GAGGAG	1 cut(s)	2404
BseX3I	CGGCCG	1 cut(s)	812
BseXI	GCAGC	6 cut(s)	101, 645, 648, 1300, 1594, 1981
BseYI	CCCAGC	3 cut(s)	711, 1253, 1498
Bsh1236I	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
Bsh1285I	CGRYCG	2 cut(s)	180, 815
BshFI	GGCC	8 cut(s)	341, 814, 1004, 1161, 1309, 1428, 1747, 1864
BsiEI	CGRYCG	2 cut(s)	180, 815
BsiHKAI	GWGCWC	2 cut(s)	1182, 2530
BsiHKCI	CYCGRG	1 cut(s)	62
BsiWI	CGTACG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	1270
BslI	CCNNNNNNNGG	5 cut(s)	827, 1013, 1883, 2483, 2507
BsmAI	GTCTC	4 cut(s)	302, 589, 1401, 2245
BsmFI	GGGAC	1 cut(s)	1270
BsmI	GAATGC	1 cut(s)	1656
BsnI	GGCC	8 cut(s)	341, 814, 1004, 1161, 1309, 1428, 1747, 1864
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	1182, 2530
Bsp1720I	GCTNAGC	2 cut(s)	1028, 2298
Bsp19I	CCATGG	1 cut(s)	1277
BspANI	GGCC	8 cut(s)	341, 814, 1004, 1161, 1309, 1428, 1747, 1864
BspFNI	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	7 cut(s)	107, 397, 1005, 1057, 1258, 1266, 2475
BspMAI	CTGCAG	1 cut(s)	2424
BspPI	GGATC	7 cut(s)	560, 726, 1520, 1579, 1644, 1680, 2161
BspTI	CTTAAG	1 cut(s)	1418
BspTNI	GGTCTC	1 cut(s)	302
BsrBI	CCGCTC	2 cut(s)	103, 325
BsrDI	GCAATG	3 cut(s)	706, 1896, 2370
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	4 cut(s)	475, 1913, 2154, 2390
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	6 cut(s)	411, 1260, 1268, 1277, 2014, 2115
BssNI	GRCGYC	2 cut(s)	372, 921
BssSI	CACGAG	1 cut(s)	1950
BssT1I	CCWWGG	5 cut(s)	1260, 1268, 1277, 2014, 2115
Bst2BI	CACGAG	1 cut(s)	1950
Bst2UI	CCWGG	2 cut(s)	635, 2484
Bst4CI	ACNGT	6 cut(s)	259, 1060, 1207, 1295, 2353, 2362
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	372, 921
BstAFI	CTTAAG	1 cut(s)	1418
BstAPI	GCANNNNNTGC	1 cut(s)	1288
BstBAI	YACGTR	2 cut(s)	622, 646
BstC8I	GCNNGC	6 cut(s)	127, 245, 327, 562, 1311, 1810
BstDSI	CCRYGG	2 cut(s)	411, 1277
BstEII	GGTNACC	2 cut(s)	75, 2426
BstENI	CCTNNNNNAGG	1 cut(s)	2481
BstF5I	GGATG	9 cut(s)	318, 331, 643, 773, 911, 1873, 1984, 2137, 2254
BstFNI	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
BstH2I	RGCGCY	2 cut(s)	384, 2095
BstHHI	GCGC	8 cut(s)	265, 273, 306, 331, 383, 497, 643, 2094
BstMAI	GTCTC	4 cut(s)	302, 589, 1401, 2245
BstMCI	CGRYCG	2 cut(s)	180, 815
BstNI	CCWGG	2 cut(s)	635, 2484
BstNSI	RCATGY	1 cut(s)	2325
BstPI	GGTNACC	2 cut(s)	75, 2426
BstSCI	CCNGG	5 cut(s)	537, 633, 809, 962, 2482
BstSFI	CTRYAG	2 cut(s)	1294, 2420
BstUI	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
BstV1I	GCAGC	6 cut(s)	101, 645, 648, 1300, 1594, 1981
BstV2I	GAAGAC	2 cut(s)	367, 1500
BstX2I	RGATCY	3 cut(s)	718, 1636, 1685
BstXI	CCANNNNNNTGG	1 cut(s)	1506
BstYI	RGATCY	3 cut(s)	718, 1636, 1685
BstZI	CGGCCG	1 cut(s)	812
Bsu36I	CCTNAGG	2 cut(s)	249, 2037
BsuI	GTATCC	2 cut(s)	1434, 2451
BsuRI	GGCC	8 cut(s)	341, 814, 1004, 1161, 1309, 1428, 1747, 1864
BtgI	CCRYGG	2 cut(s)	411, 1277
BtsCI	GGATG	9 cut(s)	318, 331, 643, 773, 911, 1873, 1984, 2137, 2254
BtsIMutI	CAGTG	4 cut(s)	1203, 1291, 1796, 2196
Cac8I	GCNNGC	6 cut(s)	127, 245, 327, 562, 1311, 1810
CaiI	CAGNNNCTG	2 cut(s)	1621, 1769
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	8 cut(s)	265, 273, 306, 331, 383, 497, 643, 2094
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	5 cut(s)	88, 464, 1003, 1257, 1307
Cfr42I	CCGCGG	1 cut(s)	414
CseI	GACGC	2 cut(s)	262, 1599
Csp6I	GTAC	6 cut(s)	267, 878, 1669, 1853, 2140, 2187
CviQI	GTAC	6 cut(s)	267, 878, 1669, 1853, 2140, 2187
DraI	TTTAAA	2 cut(s)	1213, 2329
DraIII	CACNNNGTG	1 cut(s)	787
DrdI	GACNNNNNNGTC	2 cut(s)	230, 2141
DseDI	GACNNNNNNGTC	2 cut(s)	230, 2141
EaeI	YGGCCR	4 cut(s)	339, 812, 1159, 1745
EagI	CGGCCG	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	98, 1678
Ecl136II	GAGCTC	1 cut(s)	2528
EclXI	CGGCCG	1 cut(s)	812
Eco130I	CCWWGG	5 cut(s)	1260, 1268, 1277, 2014, 2115
Eco24I	GRGCYC	1 cut(s)	2530
Eco31I	GGTCTC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	3 cut(s)	88, 464, 1257
Eco47III	AGCGCT	1 cut(s)	2093
Eco52I	CGGCCG	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	2528
Eco57I	CTGAAG	4 cut(s)	1551, 1820, 1887, 2397
Eco72I	CACGTG	2 cut(s)	622, 646
Eco81I	CCTNAGG	2 cut(s)	249, 2037
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	2 cut(s)	75, 2426
EcoICRI	GAGCTC	1 cut(s)	2528
EcoNI	CCTNNNNNAGG	1 cut(s)	2481
EcoO65I	GGTNACC	2 cut(s)	75, 2426
EcoRI	GAATTC	2 cut(s)	979, 1879
EcoRII	CCWGG	2 cut(s)	633, 2482
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	5 cut(s)	1260, 1268, 1277, 2014, 2115
EcoT22I	ATGCAT	1 cut(s)	1744
EcoT38I	GRGCYC	1 cut(s)	2530
ErhI	CCWWGG	5 cut(s)	1260, 1268, 1277, 2014, 2115
FaqI	GGGAC	1 cut(s)	1270
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	3 cut(s)	750, 1318, 1738
FbaI	TGATCA	1 cut(s)	2548
FblI	GTMKAC	3 cut(s)	180, 543, 924
FokI	GGATG	9 cut(s)	305, 318, 650, 780, 898, 1860, 1971, 2144, 2241
FriOI	GRGCYC	1 cut(s)	2530
FspAI	RTGCGCAY	1 cut(s)	642
FspBI	CTAG	2 cut(s)	842, 1640
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	8 cut(s)	264, 272, 305, 330, 382, 496, 642, 2093
GsaI	CCCAGC	3 cut(s)	715, 1257, 1502
GsuI	CTGGAG	1 cut(s)	2407
HaeII	RGCGCY	2 cut(s)	384, 2095
HaeIII	GGCC	8 cut(s)	341, 814, 1004, 1161, 1309, 1428, 1747, 1864
HgaI	GACGC	2 cut(s)	262, 1599
HhaI	GCGC	8 cut(s)	265, 273, 306, 331, 383, 497, 643, 2094
Hin1I	GRCGYC	2 cut(s)	372, 921
Hin6I	GCGC	8 cut(s)	263, 271, 304, 329, 381, 495, 641, 2092
HinP1I	GCGC	8 cut(s)	263, 271, 304, 329, 381, 495, 641, 2092
HincII	GTYRAC	2 cut(s)	181, 1201
HindII	GTYRAC	2 cut(s)	181, 1201
HindIII	AAGCTT	1 cut(s)	1025
HphI	GGTGA	6 cut(s)	112, 191, 370, 737, 2394, 2420
Hpy166II	GTNNAC	8 cut(s)	181, 519, 544, 878, 925, 1093, 1201, 2021
Hpy8I	GTNNAC	8 cut(s)	181, 519, 544, 878, 925, 1093, 1201, 2021
Hpy99I	CGWCG	3 cut(s)	185, 374, 923
HpyAV	CCTTC	4 cut(s)	571, 866, 1862, 2441
HpyCH4III	ACNGT	6 cut(s)	259, 1060, 1207, 1295, 2353, 2362
HpyCH4IV	ACGT	6 cut(s)	231, 372, 621, 645, 921, 2142
HpySE526I	ACGT	6 cut(s)	231, 372, 621, 645, 921, 2142
Hsp92I	GRCGYC	2 cut(s)	372, 921
HspAI	GCGC	8 cut(s)	263, 271, 304, 329, 381, 495, 641, 2092
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	2548
KspI	CCGCGG	1 cut(s)	414
LmnI	GCTCC	6 cut(s)	19, 111, 161, 1270, 1766, 2525
Lsp1109I	GCAGC	6 cut(s)	101, 645, 648, 1300, 1594, 1981
LweI	GCATC	7 cut(s)	327, 340, 628, 879, 1112, 1750, 2311
MaeI	CTAG	2 cut(s)	842, 1640
MaeII	ACGT	6 cut(s)	231, 372, 621, 645, 921, 2142
MaeIII	GTNAC	6 cut(s)	75, 617, 988, 1611, 2286, 2426
MbiI	CCGCTC	2 cut(s)	103, 325
MfeI	CAATTG	1 cut(s)	1785
MflI	RGATCY	3 cut(s)	718, 1636, 1685
MhlI	GDGCHC	2 cut(s)	1182, 2530
MlsI	TGGCCA	1 cut(s)	1747
MluNI	TGGCCA	1 cut(s)	1747
MlyI	GAGTC	4 cut(s)	218, 591, 1559, 2084
MmeI	TCCRAC	5 cut(s)	612, 745, 939, 1033, 2295
Mox20I	TGGCCA	1 cut(s)	1747
Mph1103I	ATGCAT	1 cut(s)	1744
MroNI	GCCGGC	1 cut(s)	560
MroXI	GAANNNNTTC	2 cut(s)	971, 2031
MscI	TGGCCA	1 cut(s)	1747
MseI	TTAA	7 cut(s)	279, 836, 1212, 1419, 2166, 2328, 2538
MslI	CAYNNNNRTG	3 cut(s)	1404, 1741, 2259
Msp20I	TGGCCA	1 cut(s)	1747
MspA1I	CMGCKG	2 cut(s)	114, 413
MspCI	CTTAAG	1 cut(s)	1418
MspR9I	CCNGG	5 cut(s)	539, 635, 811, 964, 2484
MunI	CAATTG	1 cut(s)	1785
Mva1269I	GAATGC	1 cut(s)	1656
MvaI	CCWGG	2 cut(s)	635, 2484
MvnI	CGCG	8 cut(s)	265, 271, 273, 306, 329, 413, 497, 825
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	3 cut(s)	539, 811, 964
NcoI	CCATGG	1 cut(s)	1277
NdeI	CATATG	3 cut(s)	750, 1318, 1738
NgoMIV	GCCGGC	1 cut(s)	560
NlaIV	GGNNCC	7 cut(s)	107, 397, 1005, 1057, 1258, 1266, 2475
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	5 cut(s)	617, 988, 1611, 2286, 2426
NsbI	TGCGCA	1 cut(s)	642
NsiI	ATGCAT	1 cut(s)	1744
NspI	RCATGY	1 cut(s)	2325
PaeR7I	CTCGAG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	213
PctI	GAATGC	1 cut(s)	1656
PdiI	GCCGGC	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	971, 2031
PfeI	GAWTC	7 cut(s)	292, 420, 1409, 1463, 1780, 1979, 2086
Pfl23II	CGTACG	1 cut(s)	266
PleI	GAGTC	4 cut(s)	218, 590, 1559, 2083
PmaCI	CACGTG	2 cut(s)	622, 646
PmlI	CACGTG	2 cut(s)	622, 646
PpsI	GAGTC	4 cut(s)	218, 590, 1559, 2083
Ppu21I	YACGTR	2 cut(s)	622, 646
PsiI	TTATAA	4 cut(s)	696, 1037, 1331, 1755
Psp124BI	GAGCTC	1 cut(s)	2530
Psp6I	CCWGG	2 cut(s)	633, 2482
PspCI	CACGTG	2 cut(s)	622, 646
PspEI	GGTNACC	2 cut(s)	75, 2426
PspFI	CCCAGC	3 cut(s)	711, 1253, 1498
PspGI	CCWGG	2 cut(s)	633, 2482
PspLI	CGTACG	1 cut(s)	266
PspN4I	GGNNCC	7 cut(s)	107, 397, 1005, 1057, 1258, 1266, 2475
PspPI	GGNCC	5 cut(s)	88, 464, 1003, 1257, 1307
PspXI	VCTCGAGB	1 cut(s)	62
PsrI	GAACNNNNNNTAC	2 cut(s)	1048, 1080
PstI	CTGCAG	1 cut(s)	2424
PstNI	CAGNNNCTG	2 cut(s)	1621, 1769
PsuI	RGATCY	3 cut(s)	718, 1636, 1685
RsaI	GTAC	6 cut(s)	268, 879, 1670, 1854, 2141, 2188
RsaNI	GTAC	6 cut(s)	267, 878, 1669, 1853, 2140, 2187
RseI	CAYNNNNRTG	3 cut(s)	1404, 1741, 2259
SacI	GAGCTC	1 cut(s)	2530
SacII	CCGCGG	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	7 cut(s)	279, 836, 1212, 1419, 2166, 2328, 2538
Sau96I	GGNCC	5 cut(s)	88, 464, 1003, 1257, 1307
SchI	GAGTC	4 cut(s)	218, 591, 1559, 2084
ScrFI	CCNGG	5 cut(s)	539, 635, 811, 964, 2484
SduI	GDGCHC	2 cut(s)	1182, 2530
SfaNI	GCATC	7 cut(s)	327, 340, 628, 879, 1112, 1750, 2311
SfcI	CTRYAG	2 cut(s)	1294, 2420
Sfr274I	CTCGAG	1 cut(s)	62
Sfr303I	CCGCGG	1 cut(s)	414
SgrBI	CCGCGG	1 cut(s)	414
SinI	GGWCC	3 cut(s)	88, 464, 1257
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	3 cut(s)	1404, 1741, 2259
SmlI	CTYRAG	4 cut(s)	62, 854, 1418, 1989
SmoI	CTYRAG	4 cut(s)	62, 854, 1418, 1989
SspI	AATATT	1 cut(s)	2164
SspMI	CTAG	2 cut(s)	842, 1640
SstI	GAGCTC	1 cut(s)	2530
StyD4I	CCNGG	5 cut(s)	537, 633, 809, 962, 2482
StyI	CCWWGG	5 cut(s)	1260, 1268, 1277, 2014, 2115
TaaI	ACNGT	6 cut(s)	259, 1060, 1207, 1295, 2353, 2362
TaiI	ACGT	6 cut(s)	234, 375, 624, 648, 924, 2145
TaqI	TCGA	5 cut(s)	63, 180, 507, 528, 2281
TaqII	GACCGA	1 cut(s)	166
TauI	GCSGC	8 cut(s)	106, 114, 341, 628, 667, 828, 831, 2514
TfiI	GAWTC	7 cut(s)	292, 420, 1409, 1463, 1780, 1979, 2086
Tru1I	TTAA	7 cut(s)	279, 836, 1212, 1419, 2166, 2328, 2538
Tru9I	TTAA	7 cut(s)	279, 836, 1212, 1419, 2166, 2328, 2538
TscAI	CASTG	4 cut(s)	1210, 1298, 1803, 2203
TseFI	GTSAC	5 cut(s)	617, 988, 1611, 2286, 2426
TseI	GCWGC	6 cut(s)	114, 658, 661, 1313, 1607, 1969
Tsp45I	GTSAC	5 cut(s)	617, 988, 1611, 2286, 2426
TspDTI	ATGAA	8 cut(s)	969, 972, 1214, 1425, 1690, 1722, 2099, 2505
TspGWI	ACGGA	3 cut(s)	589, 696, 2433
TspRI	CASTG	4 cut(s)	1210, 1298, 1803, 2203
Vha464I	CTTAAG	1 cut(s)	1418
VpaK11BI	GGWCC	3 cut(s)	88, 464, 1257
XagI	CCTNNNNNAGG	1 cut(s)	2481
XapI	RAATTY	9 cut(s)	350, 979, 1230, 1333, 1472, 1879, 1899, 2494, 2541
XceI	RCATGY	1 cut(s)	2325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1275
XhoI	CTCGAG	1 cut(s)	62
XmiI	GTMKAC	3 cut(s)	180, 543, 924
XmnI	GAANNNNTTC	2 cut(s)	971, 2031
XspI	CTAG	2 cut(s)	842, 1640
ZraI	GACGTC	2 cut(s)	373, 922
Zsp2I	ATGCAT	1 cut(s)	1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.