Rroxscaffold_3G00238820

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
27054135 .. 27112856
58722 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00238820.1

Sequence Viewer

Length: 2577 bp
ATGGGGAATGAGGATCACCATGAATCTCCAGCCCCAACAAATGAATGTGAGAGTTCTAAAGAACATATTATCCTGCATGGTGAGCTAGATTTATGGATCATAGAAGCTAAATCTCTTCCAAATATGGATTTACCTTCAGAAAGAATGAGAAAGTGTTTTACCATGTTTGGAACTTGCTCTGCTCCTTTTGGAAATCGGTCTACTACTAAAGCTCTTTCTGGAAAACGGCCTTCAACTATTACAAGTGACCCTTATGTTTCTGTTTGCCTAGCAGGAGCTACTGTAGCTCAGACTAGAGTAATTTCAAATAGTGAAAATCCTTCATGGGAAGAACATTTTTGTGTGCCTGTTGCTCACCCTATTATGAAGGTGGAGTTTCATGTTAAGGATAATGATGTTCTTGGAGCTGAACTTATTGGAGTAGTTGAGATATCTGTTGATAAAATCATTTCGGGAAATACAATTAATGATTGGTTTCCCATCATTGGTAATCCTGGAAATTGCTTGAAACCTTTTCCTGAATTGCATGTTTCTGTTCAGTTTAAGCCAGTTGAAAACAACCCTCTATATAAGAATGGTGTTGGTGTCGGGCCAGAATATAAAGGAGTTCCTAATACATATTTTCCACTTCGCAAAGGAGGGAGTGTCACTTTATATCAAGATGCTCATGTACCTAATGATATGTTACCTGAAATTTTACTAGATGGTGGTACAGTTTTTCAGCAAAGAAAATGTTGGGAAGAAATATGTCATGCTATTTTAGAAGCTCAACATCTTATATATATTATAGGGTGGTCTGTATACCATCGTGTCAAGCTTGTAAGGGAACCAACAAAGCCACTACCCTCTGGAGGAGAAATGGAACTCGGAGAGTTGCTAAAATATAAGTCGCAAGAAGGGATCCGGGTTGTTTTGTTAATTTGGGATGATAAAACTTCGCACGACAAGTTTCTATTAAAAACAGAGGGTGTCATGGCAACACATGATGAGGAAACAAAAAAGTTTTTCAAACATTCTAGTGTTCATTGTGTGCTTTCTCCTCGTTATGCAAGCAATAAGCTTAGCATTTTCAAGCAACAGGTTGTGGGAACTCTTTTTACGCATCATCAGAAGTGTGTGATTCTTGACACAGCTTCTGGGAGTAACAGGAAAATAACTGCTTTCATTGGTGGTCTTGATTTATGTGATGGCCGATATGATACTCCTGAGCATAGACTATTTCGTGAACTTGACACAGTCTTTGAAAATGATATTCATAACCCTACATTTCCTACGAACACTTATGGCCCAAGAGAACCTTGGCATGATTTACACTGTAAAGTTGAGGGTCCTGCTGCATATGATATATTAACAAATTTTGAGCAAAGATGGAAAAAAGCGAAAAAGCGTGACTTCAAACTGAAAAAAGTCACTAATAAGCATGATGATGCCTTGATAAGGTTAGATCGCGTCTCATGGATAGTCACTCCAACTTCTGATCATAATGGTGATGAAAAAGTGTGTGTTAGCAATGAAGAAGATCGTGAAAATTGGCATGTACAGGTATTCAGGTCAATAGATTCAGGCTCTGTGAAGGGGTTTCCAAAAGGTGTCCAAGATGCTGAGGTTCAGAATCTTATTTGCGGAAAGAATTTAAAAATTGACAAGAGTATCCATGTTGCATATATCAAGGCCATAAGATCAGCTCAACACTTTATATACATTGAAAATCAGTATTTTGTTGGATCTTCGTATTATTGGCCTACATACAAAAATGCAGGTGCAGATAACTTGGTCCCAATGGAATTAGCTCTGAAAATAGCTAGCAAAATCAAGGCAAATGAACGTTTCTCAGTGTATATAGTAATACCTATGTGGCCAGAAGGTGTTCCAACTACCTCATCTGTTCAAGAAATTTTATACTGGCAGGCACAAACAATGGGTATGATGTACAAGATTGTTACAAATGCCCTTAAAGAGGCAGGCCTTTCTGATCAGTATCATCCACAAGATTATTTGAACTTTTACTGTCTTGGTAAGCGTGAACCTCCATCTTCGAAAGGTTCATCTGAAGCTAATCAGTCATTTGACAATCGTACCTTGGCATCAGCCCAAAAGTTCCGTCGGTTTATGATCTATGTTCATGCCAAAGGAATGATTGTTGATGATGAGTTTGTAATCATGGGTTCTGCAAATATTAACCAAAGATCAATGGATGGTTCAAGGGACACAGAAATTGCTATGGGTGCTTACCAACCACACCATACATGGGCAACTTTAAAAAATCTTCATCCACATGGCCAGGTATATGGTTACCGAATGTCTCTTTGGGCTGAGCACCTCGGTGGACTTGAGGATACTTTTAAAGACCCTGAAAGCCTTGAATGCACTAAGCGTGTTTGTGAGATTGCCAAACAAAACTGGAATCAATTTGTAGCCCAAGAGCATCAGGAGTTGAAGGGACACTTGATGCAGTACCCAATTCAAATTGGTAGAGATGGAAATGTGTCTTCCATACCAGGATTTGAATCATTTCCTGATGTTGGTGGTAAAATTCTCGGGGCACCCACCAATCTTCCTGATGTTCTAACAACATAA

Protein Analysis

858

Amino Acids

96.97

Weight (kDa)

6.37

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 28 - 160 1.7e-16 C2 domain
PLDc_2 PF13091 611 - 741 2.9e-08 PLD-like domain
PLDc PF00614 705 - 730 4.2e-06 Phospholipase D Active site motif
PLD_C PF12357 778 - 848 4.5e-28 Phospholipase D C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1748
Acc36I ACCTGC 1 cut(s) 1748
AccB1I GGYRCC 1 cut(s) 2542
AccI GTMKAC 2 cut(s) 200, 801
AccII CGCG 1 cut(s) 1449
AciI CCGC 1 cut(s) 1623
AclI AACGTT 1 cut(s) 1825
AclWI GGATC 5 cut(s) 21, 104, 895, 908, 1732
AcoI YGGCCR 3 cut(s) 1189, 1856, 2278
AcsI RAATTY 5 cut(s) 693, 1354, 1630, 1893, 2532
AcuI CTGAAG 2 cut(s) 120, 2070
AfaI GTAC 6 cut(s) 672, 712, 1539, 1931, 2077, 2456
AfiI CCNNNNNNNGG 6 cut(s) 485, 851, 1437, 1957, 2248, 2522
AjnI CCWGG 3 cut(s) 493, 2280, 2497
AjuI GAANNNNNNNTTGG 2 cut(s) 2290, 2322
AleI CACNNNNGTG 1 cut(s) 2322
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
Alw21I GWGCWC 1 cut(s) 2319
Alw26I GTCTC 2 cut(s) 1456, 2307
AlwI GGATC 5 cut(s) 21, 104, 895, 908, 1732
AlwNI CAGNNNCTG 2 cut(s) 1136, 1568
Ama87I CYCGRG 1 cut(s) 2537
AoxI GGCC 9 cut(s) 227, 590, 1189, 1285, 1671, 1739, 1856, 1963, 2278
ApeKI GCWGC 1 cut(s) 1334
ApoI RAATTY 5 cut(s) 693, 1354, 1630, 1893, 2532
ArsI GACNNNNNNTTYG 4 cut(s) 1223, 1255, 2086, 2118
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 2 cut(s) 1866, 2511
AspS9I GGNCC 4 cut(s) 590, 1286, 1328, 1774
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 4 cut(s) 8, 92, 347, 1499
AsuII TTCGAA 1 cut(s) 2036
AsuNHI GCTAGC 1 cut(s) 1802
AvaI CYCGRG 1 cut(s) 2537
AvaII GGWCC 2 cut(s) 1328, 1774
BaeGI GKGCMC 1 cut(s) 2545
BaeI ACNNNNGTAYC 4 cut(s) 1633, 1666, 2059, 2092
BalI TGGCCA 2 cut(s) 1858, 2280
BamHI GGATCC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 2542
BbsI GAAGAC 1 cut(s) 2481
Bbv12I GWGCWC 1 cut(s) 2319
BbvCI CCTCAGC 1 cut(s) 1602
BbvI GCAGC 1 cut(s) 1321
BccI CCATC 8 cut(s) 488, 698, 813, 1181, 1362, 2038, 2189, 2471
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 3 cut(s) 495, 2282, 2499
BciVI GTATCC 2 cut(s) 1661, 2329
BclI TGATCA 2 cut(s) 1477, 1972
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 1456, 2307
BfaI CTAG 6 cut(s) 86, 269, 294, 701, 1017, 1803
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 1748
BfuI GTATCC 2 cut(s) 1661, 2329
BisI GCNGC 1 cut(s) 1335
BlpI GCTNAGC 2 cut(s) 1061, 2313
BlsI GCNGC 1 cut(s) 1336
Bme1390I CCNGG 4 cut(s) 495, 905, 2282, 2499
Bme18I GGWCC 2 cut(s) 1328, 1774
BmeT110I CYCGRG 1 cut(s) 2537
BmgT120I GGNCC 4 cut(s) 590, 1286, 1328, 1774
BmiI GGNNCC 5 cut(s) 828, 902, 1329, 1776, 2544
BmrFI CCNGG 4 cut(s) 495, 905, 2282, 2499
BmsI GCATC 7 cut(s) 652, 1111, 1417, 1588, 2093, 2434, 2439
BmtI GCTAGC 1 cut(s) 1806
BpiI GAAGAC 1 cut(s) 2481
BpmI CTGGAG 2 cut(s) 12, 870
Bpu10I CCTNAGC 2 cut(s) 1206, 1602
Bpu1102I GCTNAGC 2 cut(s) 1061, 2313
Bpu14I TTCGAA 1 cut(s) 2036
BpuEI CTTGAG 1 cut(s) 2351
BpuMI CCSGG 1 cut(s) 905
BsaBI GATNNNNATC 2 cut(s) 1977, 2506
BsaJI CCNNGG 3 cut(s) 1298, 2079, 2320
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 630, 660
Bsc4I CCNNNNNNNGG 6 cut(s) 485, 851, 1437, 1957, 2248, 2522
Bse1I ACTGG 3 cut(s) 548, 1907, 2405
Bse3DI GCAATG 1 cut(s) 1516
Bse8I GATNNNNATC 2 cut(s) 1977, 2506
BseBI CCWGG 3 cut(s) 495, 2282, 2499
BseDI CCNNGG 3 cut(s) 1298, 2079, 2320
BseGI GGATG 4 cut(s) 931, 1981, 2200, 2269
BseJI GATNNNNATC 2 cut(s) 1977, 2506
BseLI CCNNNNNNNGG 6 cut(s) 485, 851, 1437, 1957, 2248, 2522
BseMI GCAATG 1 cut(s) 1516
BseMII CTCAG 5 cut(s) 302, 1197, 1593, 1845, 2304
BseNI ACTGG 3 cut(s) 548, 1907, 2405
BseRI GAGGAG 2 cut(s) 867, 1029
BseSI GKGCMC 1 cut(s) 2545
BseXI GCAGC 1 cut(s) 1321
BsgI GTGCAG 1 cut(s) 1782
Bsh1236I CGCG 1 cut(s) 1449
BshFI GGCC 9 cut(s) 229, 592, 1191, 1287, 1673, 1741, 1858, 1965, 2280
BshNI GGYRCC 1 cut(s) 2542
BsiHKAI GWGCWC 1 cut(s) 2319
BsiHKCI CYCGRG 1 cut(s) 2537
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 3 cut(s) 1760, 2219, 2454
BslI CCNNNNNNNGG 6 cut(s) 485, 851, 1437, 1957, 2248, 2522
BsmAI GTCTC 2 cut(s) 1456, 2307
BsmBI CGTCTC 1 cut(s) 1456
BsmFI GGGAC 3 cut(s) 1760, 2219, 2454
BsmI GAATGC 1 cut(s) 2369
BsnI GGCC 9 cut(s) 229, 592, 1191, 1287, 1673, 1741, 1858, 1965, 2280
BsoBI CYCGRG 1 cut(s) 2537
Bsp119I TTCGAA 1 cut(s) 2036
Bsp1286I GDGCHC 2 cut(s) 2319, 2545
Bsp1407I TGTACA 2 cut(s) 1537, 1929
Bsp1720I GCTNAGC 2 cut(s) 1061, 2313
BspACI CCGC 1 cut(s) 1623
BspANI GGCC 9 cut(s) 229, 592, 1191, 1287, 1673, 1741, 1858, 1965, 2280
BspCNI CTCAG 5 cut(s) 301, 1198, 1594, 1844, 2305
BspFNI CGCG 1 cut(s) 1449
BspLI GGNNCC 5 cut(s) 828, 902, 1329, 1776, 2544
BspMI ACCTGC 1 cut(s) 1748
BspOI GCTAGC 1 cut(s) 1806
BspPI GGATC 5 cut(s) 21, 104, 895, 908, 1732
BspT104I TTCGAA 1 cut(s) 2036
BspT107I GGYRCC 1 cut(s) 2542
BsrDI GCAATG 1 cut(s) 1516
BsrGI TGTACA 2 cut(s) 1537, 1929
BsrI ACTGG 3 cut(s) 548, 1907, 2405
BssECI CCNNGG 3 cut(s) 1298, 2079, 2320
BssNAI GTATAC 1 cut(s) 802
BssT1I CCWWGG 2 cut(s) 1298, 2079
Bst1107I GTATAC 1 cut(s) 802
Bst2UI CCWGG 3 cut(s) 495, 2282, 2499
Bst4CI ACNGT 5 cut(s) 283, 715, 1237, 1316, 2009
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 2 cut(s) 1537, 1929
BstBI TTCGAA 1 cut(s) 2036
BstC8I GCNNGC 4 cut(s) 1051, 1804, 1908, 1963
BstDEI CTNAG 7 cut(s) 288, 1061, 1206, 1602, 1831, 2313, 2370
BstEII GGTNACC 1 cut(s) 2291
BstENI CCTNNNNNAGG 2 cut(s) 1435, 1955
BstF5I GGATG 4 cut(s) 931, 1981, 2200, 2269
BstFNI CGCG 1 cut(s) 1449
BstMAI GTCTC 2 cut(s) 1456, 2307
BstMWI GCNNNNNNNGC 4 cut(s) 82, 284, 2225, 2364
BstNI CCWGG 3 cut(s) 495, 2282, 2499
BstNSI RCATGY 2 cut(s) 530, 1538
BstPI GGTNACC 1 cut(s) 2291
BstSCI CCNGG 4 cut(s) 493, 903, 2280, 2497
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 2545
BstUI CGCG 1 cut(s) 1449
BstV1I GCAGC 1 cut(s) 1321
BstV2I GAAGAC 1 cut(s) 2481
BstX2I RGATCY 2 cut(s) 900, 1724
BstXI CCANNNNNNTGG 1 cut(s) 2288
BstYI RGATCY 2 cut(s) 900, 1724
BstZ17I GTATAC 1 cut(s) 802
BsuI GTATCC 2 cut(s) 1661, 2329
BsuRI GGCC 9 cut(s) 229, 592, 1191, 1287, 1673, 1741, 1858, 1965, 2280
BtsCI GGATG 4 cut(s) 931, 1981, 2200, 2269
BtsIMutI CAGTG 2 cut(s) 1312, 1839
BveI ACCTGC 1 cut(s) 1748
Cac8I GCNNGC 4 cut(s) 1051, 1804, 1908, 1963
CaiI CAGNNNCTG 2 cut(s) 1136, 1568
Cfr13I GGNCC 4 cut(s) 590, 1286, 1328, 1774
CseI GACGC 1 cut(s) 1438
Csp6I GTAC 6 cut(s) 671, 711, 1538, 1930, 2076, 2455
CviQI GTAC 6 cut(s) 671, 711, 1538, 1930, 2076, 2455
DdeI CTNAG 7 cut(s) 288, 1061, 1206, 1602, 1831, 2313, 2370
DraI TTTAAA 3 cut(s) 1635, 2259, 2344
EaeI YGGCCR 3 cut(s) 1189, 1856, 2278
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 1298, 2079
Eco147I AGGCCT 1 cut(s) 1965
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 1328, 1774
Eco57I CTGAAG 2 cut(s) 120, 2070
Eco88I CYCGRG 1 cut(s) 2537
Eco91I GGTNACC 1 cut(s) 2291
EcoNI CCTNNNNNAGG 2 cut(s) 1435, 1955
EcoO109I RGGNCCY 1 cut(s) 1328
EcoO65I GGTNACC 1 cut(s) 2291
EcoRII CCWGG 3 cut(s) 493, 2280, 2497
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 1298, 2079
ErhI CCWWGG 2 cut(s) 1298, 2079
Esp3I CGTCTC 1 cut(s) 1456
FalI AAGNNNNNCTT 8 cut(s) 235, 267, 1282, 1314, 1376, 1408, 2429, 2461
FaqI GGGAC 3 cut(s) 1760, 2219, 2454
FauNDI CATATG 1 cut(s) 1339
FbaI TGATCA 2 cut(s) 1477, 1972
FblI GTMKAC 2 cut(s) 200, 801
Fnu4HI GCNGC 1 cut(s) 1335
FokI GGATG 4 cut(s) 938, 1968, 2207, 2256
Fsp4HI GCNGC 1 cut(s) 1335
FspBI CTAG 6 cut(s) 86, 269, 294, 701, 1017, 1803
GluI GCNGC 1 cut(s) 1335
GsuI CTGGAG 2 cut(s) 12, 870
HaeIII GGCC 9 cut(s) 229, 592, 1191, 1287, 1673, 1741, 1858, 1965, 2280
HapII CCGG 1 cut(s) 904
HgaI GACGC 1 cut(s) 1438
HindIII AAGCTT 2 cut(s) 815, 1058
HinfI GANTC 6 cut(s) 23, 1120, 1559, 1612, 2404, 2507
HpaII CCGG 1 cut(s) 904
HphI GGTGA 4 cut(s) 8, 92, 347, 1499
Hpy166II GTNNAC 5 cut(s) 201, 802, 1226, 2024, 2327
Hpy188I TCNGA 9 cut(s) 139, 291, 869, 1110, 1477, 1611, 1794, 1972, 2050
Hpy8I GTNNAC 5 cut(s) 201, 802, 1226, 2024, 2327
Hpy99I CGWCG 1 cut(s) 2106
HpyAV CCTTC 8 cut(s) 144, 240, 330, 361, 890, 1567, 1856, 2431
HpyCH4III ACNGT 5 cut(s) 283, 715, 1237, 1316, 2009
HpyCH4IV ACGT 1 cut(s) 1825
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 284, 2225, 2364
HpyF3I CTNAG 7 cut(s) 288, 1061, 1206, 1602, 1831, 2313, 2370
HpySE526I ACGT 1 cut(s) 1825
Ksp22I TGATCA 2 cut(s) 1477, 1972
LmnI GCTCC 3 cut(s) 187, 275, 404
Lsp1109I GCAGC 1 cut(s) 1321
LweI GCATC 7 cut(s) 652, 1111, 1417, 1588, 2093, 2434, 2439
MaeI CTAG 6 cut(s) 86, 269, 294, 701, 1017, 1803
MaeII ACGT 1 cut(s) 1825
MaeIII GTNAC 9 cut(s) 245, 646, 684, 1142, 1388, 1408, 1462, 1939, 2291
MflI RGATCY 2 cut(s) 900, 1724
MhlI GDGCHC 2 cut(s) 2319, 2545
MlsI TGGCCA 2 cut(s) 1858, 2280
MluNI TGGCCA 2 cut(s) 1858, 2280
MmeI TCCRAC 3 cut(s) 1493, 1702, 1895
Mox20I TGGCCA 2 cut(s) 1858, 2280
MroXI GAANNNNTTC 2 cut(s) 1866, 2511
MscI TGGCCA 2 cut(s) 1858, 2280
MslI CAYNNNNRTG 6 cut(s) 339, 1017, 1425, 1485, 2274, 2322
Msp20I TGGCCA 2 cut(s) 1858, 2280
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 4 cut(s) 495, 905, 2282, 2499
Mva1269I GAATGC 1 cut(s) 2369
MvaI CCWGG 3 cut(s) 495, 2282, 2499
MvnI CGCG 1 cut(s) 1449
MwoI GCNNNNNNNGC 4 cut(s) 82, 284, 2225, 2364
NciI CCSGG 1 cut(s) 905
NdeI CATATG 1 cut(s) 1339
NheI GCTAGC 1 cut(s) 1802
NlaIV GGNNCC 5 cut(s) 828, 902, 1329, 1776, 2544
NmuCI GTSAC 5 cut(s) 245, 646, 1388, 1408, 1462
NspI RCATGY 2 cut(s) 530, 1538
NspV TTCGAA 1 cut(s) 2036
OliI CACNNNNGTG 1 cut(s) 2322
PaqCI CACCTGC 1 cut(s) 1748
PceI AGGCCT 1 cut(s) 1965
PctI GAATGC 1 cut(s) 2369
PdmI GAANNNNTTC 2 cut(s) 1866, 2511
PfeI GAWTC 6 cut(s) 23, 1120, 1559, 1612, 2404, 2507
PflFI GACNNNGTC 1 cut(s) 1235
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 1 cut(s) 1336
PpuMI RGGWCCY 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 465
Psp1406I AACGTT 1 cut(s) 1825
Psp5II RGGWCCY 1 cut(s) 1328
Psp6I CCWGG 3 cut(s) 493, 2280, 2497
PspEI GGTNACC 1 cut(s) 2291
PspGI CCWGG 3 cut(s) 493, 2280, 2497
PspN4I GGNNCC 5 cut(s) 828, 902, 1329, 1776, 2544
PspPI GGNCC 4 cut(s) 590, 1286, 1328, 1774
PspPPI RGGWCCY 1 cut(s) 1328
PsrI GAACNNNNNNTAC 2 cut(s) 1081, 1113
PstNI CAGNNNCTG 2 cut(s) 1136, 1568
PsuI RGATCY 2 cut(s) 900, 1724
PsyI GACNNNGTC 1 cut(s) 1235
RsaI GTAC 6 cut(s) 672, 712, 1539, 1931, 2077, 2456
RsaNI GTAC 6 cut(s) 671, 711, 1538, 1930, 2076, 2455
RseI CAYNNNNRTG 6 cut(s) 339, 1017, 1425, 1485, 2274, 2322
SatI GCNGC 1 cut(s) 1335
Sau96I GGNCC 4 cut(s) 590, 1286, 1328, 1774
ScrFI CCNGG 4 cut(s) 495, 905, 2282, 2499
SduI GDGCHC 2 cut(s) 2319, 2545
SfaNI GCATC 7 cut(s) 652, 1111, 1417, 1588, 2093, 2434, 2439
SfcI CTRYAG 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 2036
SinI GGWCC 2 cut(s) 1328, 1774
SmiMI CAYNNNNRTG 6 cut(s) 339, 1017, 1425, 1485, 2274, 2322
SmlI CTYRAG 1 cut(s) 2330
SmoI CTYRAG 1 cut(s) 2330
SseBI AGGCCT 1 cut(s) 1965
SsiI CCGC 1 cut(s) 1623
SspI AATATT 1 cut(s) 2176
SspMI CTAG 6 cut(s) 86, 269, 294, 701, 1017, 1803
StuI AGGCCT 1 cut(s) 1965
StyD4I CCNGG 4 cut(s) 493, 903, 2280, 2497
StyI CCWWGG 2 cut(s) 1298, 2079
TaaI ACNGT 5 cut(s) 283, 715, 1237, 1316, 2009
TaiI ACGT 1 cut(s) 1828
TaqI TCGA 1 cut(s) 2036
TaqII GACCGA 1 cut(s) 186
TatI WGTACW 2 cut(s) 1537, 1929
TfiI GAWTC 6 cut(s) 23, 1120, 1559, 1612, 2404, 2507
TscAI CASTG 2 cut(s) 1319, 1839
TseFI GTSAC 5 cut(s) 245, 646, 1388, 1408, 1462
TseI GCWGC 1 cut(s) 1334
Tsp45I GTSAC 5 cut(s) 245, 646, 1388, 1408, 1462
TspGWI ACGGA 1 cut(s) 2090
TspRI CASTG 2 cut(s) 1319, 1839
Tth111I GACNNNGTC 1 cut(s) 1235
VpaK11BI GGWCC 2 cut(s) 1328, 1774
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 2 cut(s) 1435, 1955
XapI RAATTY 5 cut(s) 693, 1354, 1630, 1893, 2532
XceI RCATGY 2 cut(s) 530, 1538
XcmI CCANNNNNNNNNTGG 2 cut(s) 1296, 2244
XmiI GTMKAC 2 cut(s) 200, 801
XmnI GAANNNNTTC 2 cut(s) 1866, 2511
XspI CTAG 6 cut(s) 86, 269, 294, 701, 1017, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.