Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452585.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

82 .. 634

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggtagtagatgatgagtacgtgattataggttctgcgaatatcaaccaacgatccatggcaggatctagggacaccgagatagccatgggggcatatcaaccgcatcacacgtggggtaagaagaagcggcatcctcatggccaggtatatggatatagaatgtcactttgggcagaacacatggggatggttgagaattgcttcaaggagcctcaaacattagaatgtgtgaagcgtgtgaacgacattggtcaggataattggagtaggttcgtggccgatgattttatagaattgcagggacacctcatcaaataccctgttgaggtttatgccaatgggaaggtaggtgcattgcctggacgagagagcttccctgatgttggcggtaagatcctcggcgcccgcactaaccttcctgatgctttaactacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

6.29

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AciI	CCGC	4 cut(s)	104, 130, 390, 409
AclWI	GGATC	3 cut(s)	48, 73, 391
AcoI	YGGCCR	2 cut(s)	142, 279
AcvI	CACGTG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	328, 386
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	144, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
AlwI	GGATC	3 cut(s)	48, 73, 391
AoxI	GGCC	2 cut(s)	142, 279
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	114
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	146, 363
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	146, 363
BmiI	GGNNCC	2 cut(s)	213, 406
BmrFI	CCNGG	2 cut(s)	146, 363
BmsI	GCATC	3 cut(s)	115, 142, 415
BoxI	GACNNNNGTC	1 cut(s)	252
BsaAI	YACGTR	2 cut(s)	22, 114
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	57, 87, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 386
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	146, 363
BseDI	CCNNGG	3 cut(s)	57, 87, 400
BseGI	GGATG	2 cut(s)	133, 195
BseLI	CCNNNNNNNGG	2 cut(s)	328, 386
BseMI	GCAATG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	144, 281
BshNI	GGYRCC	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	86, 318
BslI	CCNNNNNNNGG	2 cut(s)	328, 386
BsmFI	GGGAC	2 cut(s)	86, 318
BsnI	GGCC	2 cut(s)	144, 281
Bsp143I	GATC	3 cut(s)	53, 65, 396
Bsp19I	CCATGG	2 cut(s)	57, 87
BspACI	CCGC	4 cut(s)	104, 130, 390, 409
BspANI	GGCC	2 cut(s)	144, 281
BspLI	GGNNCC	2 cut(s)	213, 406
BspPI	GGATC	3 cut(s)	48, 73, 391
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	57, 87, 400
BssMI	GATC	3 cut(s)	53, 65, 396
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	57, 87
Bst2UI	CCWGG	2 cut(s)	146, 363
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	2 cut(s)	22, 114
BstC8I	GCNNGC	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	57, 87
BstF5I	GGATG	2 cut(s)	133, 195
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	56, 68, 399
BstMBI	GATC	3 cut(s)	53, 65, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	146, 363
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	144, 361
BstX2I	RGATCY	2 cut(s)	65, 396
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	2 cut(s)	65, 396
BsuRI	GGCC	2 cut(s)	144, 281
BtgI	CCRYGG	2 cut(s)	57, 87
BtsCI	GGATG	2 cut(s)	133, 195
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	58, 88, 140, 184
CviJI	RGCY	5 cut(s)	86, 144, 214, 281, 375
CviKI_1	RGCY	5 cut(s)	86, 144, 214, 281, 375
CviQI	GTAC	1 cut(s)	19
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	3 cut(s)	55, 67, 398
DpnII	GATC	3 cut(s)	53, 65, 396
EaeI	YGGCCR	2 cut(s)	142, 279
Eco130I	CCWWGG	2 cut(s)	57, 87
Eco72I	CACGTG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	144, 361
EcoT14I	CCWWGG	2 cut(s)	57, 87
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	57, 87
FaeI	CATG	4 cut(s)	61, 91, 143, 187
FaqI	GGGAC	2 cut(s)	86, 318
FatI	CATG	4 cut(s)	57, 87, 139, 183
FauI	CCCGC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	2 cut(s)	120, 202
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	144, 281
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	61, 91, 143, 187
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	257, 422
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	340, 428
HpyCH4IV	ACGT	2 cut(s)	21, 113
HpyCH4V	TGCA	2 cut(s)	301, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	21, 113
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	4 cut(s)	61, 91, 143, 187
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	3 cut(s)	53, 65, 396
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	3 cut(s)	115, 142, 415
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	21, 113
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	3 cut(s)	55, 67, 398
MboI	GATC	3 cut(s)	53, 65, 396
MboII	GAAGA	1 cut(s)	136
MflI	RGATCY	2 cut(s)	65, 396
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	3 cut(s)	199, 262, 296
MluNI	TGGCCA	1 cut(s)	144
Mly113I	GGCGCC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	147, 225, 320, 322, 410
Mox20I	TGGCCA	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	2 cut(s)	431, 439
MslI	CAYNNNNRTG	3 cut(s)	138, 188, 226
Msp20I	TGGCCA	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	146, 363
MvaI	CCWGG	2 cut(s)	146, 363
MwoI	GCNNNNNNNGC	1 cut(s)	92
NarI	GGCGCC	1 cut(s)	405
NcoI	CCATGG	2 cut(s)	57, 87
NdeII	GATC	3 cut(s)	53, 65, 396
NlaIII	CATG	4 cut(s)	61, 91, 143, 187
NlaIV	GGNNCC	2 cut(s)	213, 406
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	132
PluTI	GGCGCC	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	114
PmlI	CACGTG	1 cut(s)	114
Ppu21I	YACGTR	2 cut(s)	22, 114
PshAI	GACNNNNGTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	144, 361
PspCI	CACGTG	1 cut(s)	114
PspGI	CCWGG	2 cut(s)	144, 361
PspN4I	GGNNCC	2 cut(s)	213, 406
PsuI	RGATCY	2 cut(s)	65, 396
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	3 cut(s)	138, 188, 226
SaqAI	TTAA	2 cut(s)	431, 439
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	53, 65, 396
ScrFI	CCNGG	2 cut(s)	146, 363
SfaNI	GCATC	3 cut(s)	115, 142, 415
SfoI	GGCGCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	3 cut(s)	138, 188, 226
Sse9I	AATT	3 cut(s)	199, 262, 296
SsiI	CCGC	4 cut(s)	104, 130, 390, 409
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	144, 361
StyI	CCWWGG	2 cut(s)	57, 87
TaiI	ACGT	2 cut(s)	24, 116
TasI	AATT	3 cut(s)	199, 262, 296
TauI	GCSGC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	431, 439
Tru9I	TTAA	2 cut(s)	431, 439
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.