Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039265.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

572 .. 2482

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgatgcctttatctgcaggtgcaaacaatctgataccaatggaaattgctctgaaaatcgtaaataaaatcaaagcaaatgagaggttttctgtgtatattattatccccatgtggccagaaggtgatcctacaagtgttcctctacaacgaattctcctttggcagcataaaacaatgcaaatgatgtatgaaatgatttacaaggctctaaaggaggttggacttgaaaacacgtactgtccacaagactatttgaatttcttttgccttgggaatcgtgagacaccaagtggagaagacaattctgctccaaataatttaagtgaagcaaacactcctcaagcactcaccctgaagaatcggcggtttatgatttatgttcattctaaaggaatgatagtggacgatgaatatgttatactaggatctgcaaatatcaatcagcgatccatggaaggtccccgagatactgaaatagcaatgggggcttatcagcctcatcatacttggacaagaaaactctctagtccatatggaaaggtatatggatatagaatgtcactgtgggcagagcatataggacttgtcgaagaatgtttcaagcagccagagagtcttgaatgtgtccgaagggtaaggtctttgagtgagcagaactggagtcaatacgtagccaatgaagtcacagaaatgaagggtcacctcctcaagtatccggttgaagttggtccaactggcgaggtggagcctcttccaagctgtgcagcatttccagatgtcggtggctacatactggggagtctcggcgacatagggaagagtctagggatcggtagtattaatgggaggggaatatcattcagggccatgcaagaaaatctcaccatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

297

Amino Acids

33.43

Weight (kDa)

5.92

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	4 cut(s)	122, 436, 444, 839
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	153, 259
AcuI	CTGAAG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	230, 259, 604, 623, 725
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	762
AluI	AGCT	1 cut(s)	762
Alw26I	GTCTC	2 cut(s)	278, 809
AlwI	GGATC	4 cut(s)	122, 436, 444, 839
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	116, 867
ApeKI	GCWGC	3 cut(s)	166, 607, 767
ApoI	RAATTY	2 cut(s)	153, 259
AseI	ATTAAT	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	461, 731, 867
AsuHPI	GGTGA	4 cut(s)	137, 343, 695, 877
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	461, 731
BalI	TGGCCA	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	178, 619, 779
BciVI	GTATCC	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	278, 809
BfaI	CTAG	3 cut(s)	425, 528, 827
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	167, 608, 768
BlsI	GCNGC	3 cut(s)	168, 609, 769
Bme18I	GGWCC	2 cut(s)	461, 731
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	461, 731, 867
BmiI	GGNNCC	2 cut(s)	463, 750
BmrI	ACTGGG	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	682
BpuEI	CTTGAG	2 cut(s)	327, 695
BsaAI	YACGTR	2 cut(s)	237, 673
BsaJI	CCNNGG	2 cut(s)	271, 453
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	3 cut(s)	665, 742, 801
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	271, 453
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMI	GCAATG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	665, 742, 801
BseRI	GAGGAG	2 cut(s)	330, 698
BseXI	GCAGC	3 cut(s)	178, 619, 779
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	2 cut(s)	118, 869
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	2 cut(s)	278, 809
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	118, 869
BsoBI	CYCGRG	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	127, 428, 449, 831
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	2 cut(s)	118, 869
BspLI	GGNNCC	2 cut(s)	463, 750
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	4 cut(s)	122, 436, 444, 839
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	665, 742, 801
BssECI	CCNNGG	2 cut(s)	271, 453
BssMI	GATC	4 cut(s)	127, 428, 449, 831
BssT1I	CCWWGG	2 cut(s)	271, 453
Bst4CI	ACNGT	2 cut(s)	242, 567
Bst6I	CTCTTC	2 cut(s)	759, 815
BstBAI	YACGTR	2 cut(s)	237, 673
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	701
BstKTI	GATC	4 cut(s)	130, 431, 452, 834
BstMAI	GTCTC	2 cut(s)	278, 809
BstMBI	GATC	4 cut(s)	127, 428, 449, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstPI	GGTNACC	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	15
BstSNI	TACGTA	1 cut(s)	673
BstV1I	GCAGC	3 cut(s)	178, 619, 779
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	118, 869
BtgI	CCRYGG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	563
BveI	ACCTGC	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	461, 731, 867
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	112, 454, 871
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	4 cut(s)	129, 430, 451, 833
DpnII	GATC	4 cut(s)	127, 428, 449, 831
DraIII	CACNNNGTG	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	759, 815
EarI	CTCTTC	2 cut(s)	759, 815
Eco105I	TACGTA	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	271, 453
Eco47I	GGWCC	2 cut(s)	461, 731
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	271, 453
ErhI	CCWWGG	2 cut(s)	271, 453
FaeI	CATG	3 cut(s)	115, 457, 874
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	111, 453, 870
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	167, 608, 768
Fsp4HI	GCNGC	3 cut(s)	167, 608, 768
FspBI	CTAG	3 cut(s)	425, 528, 827
GluI	GCNGC	3 cut(s)	167, 608, 768
GsuI	CTGGAG	1 cut(s)	682
HaeIII	GGCC	2 cut(s)	118, 869
HapII	CCGG	1 cut(s)	719
Hin1II	CATG	3 cut(s)	115, 457, 874
HinfI	GANTC	6 cut(s)	277, 361, 616, 664, 802, 823
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	4 cut(s)	137, 343, 695, 877
Hpy166II	GTNNAC	2 cut(s)	245, 406
Hpy188I	TCNGA	4 cut(s)	33, 54, 632, 893
Hpy188III	TCNNGA	3 cut(s)	281, 620, 776
Hpy8I	GTNNAC	2 cut(s)	245, 406
HpyAV	CCTTC	4 cut(s)	116, 452, 627, 691
HpyCH4III	ACNGT	2 cut(s)	242, 567
HpyCH4IV	ACGT	2 cut(s)	236, 672
HpyCH4V	TGCA	6 cut(s)	17, 23, 181, 434, 767, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpySE526I	ACGT	2 cut(s)	236, 672
Hsp92II	CATG	3 cut(s)	115, 457, 874
Kzo9I	GATC	4 cut(s)	127, 428, 449, 831
LmnI	GCTCC	2 cut(s)	316, 748
Lsp1109I	GCAGC	3 cut(s)	178, 619, 779
MaeI	CTAG	3 cut(s)	425, 528, 827
MaeII	ACGT	2 cut(s)	236, 672
MaeIII	GTNAC	3 cut(s)	561, 685, 701
MalI	GATC	4 cut(s)	129, 430, 451, 833
MboI	GATC	4 cut(s)	127, 428, 449, 831
MboII	GAAGA	5 cut(s)	311, 370, 605, 746, 832
MflI	RGATCY	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	5 cut(s)	45, 153, 259, 304, 319
MluNI	TGGCCA	1 cut(s)	118
MlyI	GAGTC	4 cut(s)	625, 673, 811, 832
MmeI	TCCRAC	2 cut(s)	202, 758
Mox20I	TGGCCA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	118
MseI	TTAA	2 cut(s)	323, 843
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	118
MspI	CCGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	127, 428, 449, 831
NlaIII	CATG	3 cut(s)	115, 457, 874
NlaIV	GGNNCC	2 cut(s)	463, 750
NmeAIII	GCCGAG	1 cut(s)	786
NmuCI	GTSAC	3 cut(s)	561, 685, 701
PaqCI	CACCTGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	277, 361
PkrI	GCNGC	3 cut(s)	168, 609, 769
PleI	GAGTC	4 cut(s)	624, 672, 810, 831
PpsI	GAGTC	4 cut(s)	624, 672, 810, 831
Ppu21I	YACGTR	2 cut(s)	237, 673
PpuMI	RGGWCCY	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	463, 750
PspPI	GGNCC	3 cut(s)	461, 731, 867
PspPPI	RGGWCCY	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	323, 843
SatI	GCNGC	3 cut(s)	167, 608, 768
Sau3AI	GATC	4 cut(s)	127, 428, 449, 831
Sau96I	GGNCC	3 cut(s)	461, 731, 867
SchI	GAGTC	4 cut(s)	625, 673, 811, 832
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	461, 731
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	342, 710
SmoI	CTYRAG	2 cut(s)	342, 710
SnaBI	TACGTA	1 cut(s)	673
Sse9I	AATT	5 cut(s)	45, 153, 259, 304, 319
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	3 cut(s)	425, 528, 827
StyI	CCWWGG	2 cut(s)	271, 453
TaaI	ACNGT	2 cut(s)	242, 567
TaiI	ACGT	2 cut(s)	239, 675
TaqI	TCGA	1 cut(s)	591
TasI	AATT	5 cut(s)	45, 153, 259, 304, 319
TfiI	GAWTC	2 cut(s)	277, 361
Tru1I	TTAA	2 cut(s)	323, 843
Tru9I	TTAA	2 cut(s)	323, 843
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	3 cut(s)	561, 685, 701
TseI	GCWGC	3 cut(s)	166, 607, 767
Tsp45I	GTSAC	3 cut(s)	561, 685, 701
TspDTI	ATGAA	5 cut(s)	207, 374, 426, 696, 710
TspRI	CASTG	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	461, 731
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	2 cut(s)	153, 259
XspI	CTAG	3 cut(s)	425, 528, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.