Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

41918541 .. 41925031

Gene Structure 6491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGTATGATGTACAAGATTGTTACAAATGCCCTTAAAGAGGCAGGCCTTTCTGATCAGTATCATCCACAAGATTATTTGAACTTTTATTGTCTTGGTAAGCGTGAACCTCCATCTTTGAAAGGTTCATCAGAAGCTAATCAGTCATTTGACAATCGTACCTTGGCATCAGCCCAAAAGTTTCGTCGGTTTATGATCTATGTTCATGCCAAAGGAATGATTGTTGATGATGAGTTTGTAATCATGGGTTCTGCAAATATTAACCAAAGATCAATGGATGGTTCAAGGGATACAGAAATTGCTATGGGTGCTTACCAACCACACCATACATGGGCAGCTCTAAAAAATCTTCATCCACATGGCCAGGTATATGGTTACCGAATGTCTCTTTGGGCTGAGCACCTCGGTGGACTTGAGGATACTTTTAAAGACCCTCATAGCCTTGAATGCACTAAGCGTGTTTGTGAGATAGCCAAACAAAACTGGAATCAATTTGTAGCCCAAGAGCATCAGGAGTTGAAGGGACACTTGATGCAGTACCCAATTCAAATTGGTAGAGATGGAAATGTGTCTTCCATACCCGGAATTGAATCATTTCCTGATGTTGGTGGTAAAATTCTCGGGGCACCCACCAATCTTCCGGATGTTCTAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

219

Amino Acids

24.63

Weight (kDa)

6.35

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc_2	PF13091	63 - 102	1.2e-07	PLD-like domain
PLDc	PF00614	66 - 91	7.5e-07	Phospholipase D Active site motif
PLD_C	PF12357	139 - 209	1.9e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccIII	TCCGGA	1 cut(s)	640
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	615
AfaI	GTAC	3 cut(s)	14, 160, 539
AfiI	CCNNNNNNNGG	3 cut(s)	40, 331, 605
AgsI	TTSAA	7 cut(s)	82, 121, 285, 446, 520, 548, 590
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	137, 338
AluI	AGCT	2 cut(s)	137, 338
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	46, 361
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	615
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
Asp700I	GAANNNNTTC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	582
AvaI	CYCGRG	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	628
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	121, 272, 554
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	2 cut(s)	283, 412
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	390
BfuI	GTATCC	2 cut(s)	283, 412
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	365, 582
BmeT110I	CYCGRG	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	2 cut(s)	365, 582
BmsI	GCATC	3 cut(s)	176, 517, 522
BpiI	GAAGAC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	162, 403
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 331, 605
Bse1I	ACTGG	1 cut(s)	488
Bse8I	GATNNNNATC	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	162, 403
BseGI	GGATG	4 cut(s)	64, 283, 352, 649
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	40, 331, 605
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	48, 363
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	582, 641
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	3 cut(s)	40, 331, 605
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	48, 363
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	402, 628
Bsp13I	TCCGGA	1 cut(s)	640
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	55, 195, 269
Bsp1720I	GCTNAGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	48, 363
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	625
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	162, 403
BssMI	GATC	3 cut(s)	55, 195, 269
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	396, 453
BstEII	GGTNACC	1 cut(s)	374
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	64, 283, 352, 649
BstKTI	GATC	3 cut(s)	58, 198, 272
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	55, 195, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 447
BstNI	CCWGG	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	363, 580
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	564
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuI	GTATCC	2 cut(s)	283, 412
BsuRI	GGCC	2 cut(s)	48, 363
BtsCI	GGATG	4 cut(s)	64, 283, 352, 649
Cac8I	GCNNGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	13, 159, 538
CviAII	CATG	4 cut(s)	206, 244, 330, 359
CviJI	RGCY	9 cut(s)	48, 137, 173, 338, 363, 395, 441, 473, 500
CviKI_1	RGCY	9 cut(s)	48, 137, 173, 338, 363, 395, 441, 473, 500
CviQI	GTAC	3 cut(s)	13, 159, 538
DdeI	CTNAG	2 cut(s)	396, 453
DpnI	GATC	3 cut(s)	57, 197, 271
DpnII	GATC	3 cut(s)	55, 195, 269
DraI	TTTAAA	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	209, 247, 333, 362
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	4 cut(s)	205, 243, 329, 358
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	4 cut(s)	51, 290, 339, 656
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	48, 363
HapII	CCGG	2 cut(s)	582, 641
Hin1II	CATG	4 cut(s)	209, 247, 333, 362
HinfI	GANTC	2 cut(s)	487, 590
HpaII	CCGG	2 cut(s)	582, 641
Hpy166II	GTNNAC	2 cut(s)	107, 410
Hpy188I	TCNGA	2 cut(s)	55, 133
Hpy188III	TCNNGA	3 cut(s)	512, 599, 641
Hpy8I	GTNNAC	2 cut(s)	107, 410
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	514
HpyCH4V	TGCA	3 cut(s)	254, 450, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 447
HpyF3I	CTNAG	2 cut(s)	396, 453
Hsp92II	CATG	4 cut(s)	209, 247, 333, 362
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 195, 269
LpnPI	CCDG	8 cut(s)	30, 350, 377, 469, 497, 595, 612, 654
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	3 cut(s)	176, 517, 522
MaeIII	GTNAC	2 cut(s)	22, 374
MalI	GATC	3 cut(s)	57, 197, 271
MboI	GATC	3 cut(s)	55, 195, 269
MboII	GAAGA	3 cut(s)	341, 564, 629
MhlI	GDGCHC	2 cut(s)	402, 628
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	6 cut(s)	297, 491, 543, 549, 585, 615
MluNI	TGGCCA	1 cut(s)	363
MnlI	CCTC	5 cut(s)	34, 120, 409, 413, 444
Mox20I	TGGCCA	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	3 cut(s)	36, 261, 426
MslI	CAYNNNNRTG	2 cut(s)	357, 405
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	2 cut(s)	582, 641
MspR9I	CCNGG	2 cut(s)	365, 582
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	308, 447
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	55, 195, 269
NlaIII	CATG	4 cut(s)	209, 247, 333, 362
NlaIV	GGNNCC	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	48
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	487, 590
PkrI	GCNGC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	627
RsaI	GTAC	3 cut(s)	14, 160, 539
RsaNI	GTAC	3 cut(s)	13, 159, 538
RseI	CAYNNNNRTG	2 cut(s)	357, 405
SaqAI	TTAA	3 cut(s)	36, 261, 426
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	55, 195, 269
ScrFI	CCNGG	2 cut(s)	365, 582
SduI	GDGCHC	2 cut(s)	402, 628
SetI	ASST	7 cut(s)	112, 127, 139, 164, 340, 369, 405
SfaNI	GCATC	3 cut(s)	176, 517, 522
SmiMI	CAYNNNNRTG	2 cut(s)	357, 405
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	6 cut(s)	297, 491, 543, 549, 585, 615
SseBI	AGGCCT	1 cut(s)	48
SspI	AATATT	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	363, 580
StyI	CCWWGG	1 cut(s)	162
TasI	AATT	6 cut(s)	297, 491, 543, 549, 585, 615
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	487, 590
Tru1I	TTAA	3 cut(s)	36, 261, 426
Tru9I	TTAA	3 cut(s)	36, 261, 426
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	117, 194, 341
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.