Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

10342478 .. 10348811

Gene Structure 6334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCGGAACCGACGTCGTCGGAGCAGATAGTCTATCTGCACGGCGACCTGGACCTCCAAATCATCGAGGCGCGCTACCTGCCCAACATGGACATCGTCTCCGAGCGCCTCCGCCGCTGCTTCACCGCCTGCGACACCGTCAACTGCACCGGCTCCCGCTCCGACAATCCCGATGCCGGCCACGGAGCCGAGGACCGTAAGAAGCTCCACCACCGCAAAATCATCACCAGCGACTCTTACGTCAGCGTCGTTGTGCCCCAGGCCACGGTGGCGCGTACGCGCGTCATCAAGAACTCGCAGAATCCTCAGTGGAAAGAGTCCTTTTCCATCCCGCTCGCGCATCCCGCGGCTAAGGTTGAGTTTCAGGTCAAAGATAACGACCTCTTCGGCGCTGAGCTTATCGGCACCGCCTCTATCCCCGCCGCAGAAATCGCCTCCGGAAAATCCATTTCCGGCTGGTATGAGATTATCGGACCCACCGGAAAGCCTCCGAAGCCTGATTGCGCTATTAAGGTCGAGTTGAAGTTCACGCCCTTCGAGATAAACCCGGTCTACAGGAACGGCATCGCCGGCGATCCAGAACGGAAGGGAGTCCCCAAGACCTACTTCCCTATGAGGAAGGGAAGTCACGTGAGGCTGTACCAGGACGCGCACGTGCCGGAGGGGATGCTGCCGCAGATTGAATTGGACGGAAGGAAGGTTTATAAGCCTGAGAATTGCTGGGAGGACATTTGCTATGCGATTTCGGAGGCTCACCATATGATCTATGTGGTGGGATGGTCTGTGTTTCACAAAGTGAGGCTGGTTAGGGAGCCGAGCAGGAAGTTGCCACGCGGCGGCGAGTTGACGCTCGGAGAGTTGCTCAAGTATAAATCGGAAGAAGGCGTACGGGTTTTGTTGCTGGTCTGGGATGATAAGACCTCCCACGACAAGTTCTTCTTCAAATCGGCAGGAATGATGCAAACTCATGATGAAGAAACCCGGAAGTTTTTCAAGCATTCGTCTGTCACTTGTGTTCTGGCCCCTCGCTATGGCAGTAGTAAGCTTAGCATTATGAAACAACAGGTTGTTGGAACCCTCTTCACACACCATCAAAAATGTGTTATTGTGGACACACAAGCATCTGGTAATAACCGCAAGATAACTACATTTTTAGGAGGTCTTGATCTCTGTGATGGTCGTTATGACACACCTGAGCACAGATTGTTTCGGGATCTCGACACTGTGTTTAAAGAAGATTTTCATCAACCTACGTTTCCTGCTGGGACCAAGGCTCCAAGGCAACCATGGCATGACTTGCACTGTAGAATTGACGGGCCTGCTGCATATGATGTTCTTATAAACTTTGAGCAACGGTGGAGGAGAGCAACACAGTGGAGGGAGTTTGGACTACGTAAAAAGGTTTCGCATTGGCATGATGATGCTTTAATTAAGATAGACCGTATTTCATGGATACTTAGTCCTAAGATGTCTCATTCAAAGGATGTTACAATTGTTCCTGAAGATGACCCAGCTTTATGGGTTCAGAGAGAAGATGATCCCGAAGATTGGCATGTTCAGATTTTCAGGTCTATTGACTCGGGATCACTGAAAGGATTTCCCAAAGATGTCATTCATGCTCAGTCAAAGAACCTTATTTGCTCAAAGGATCTAGTAATAGATAAAAGCATCCAGAAAGCATACATCAATGCAATCCGATCTGCCCAACATTTCATATATATTGAAAATCAGTATTTTCTTGGTTCATCATATGCATGGCCAGATTATAAAAATGCAGGTAAGGTGACAATCTACTGTGCACTGAAGTATAACTCTTTGAAAAACATAATGTTTATACTTTCGGAGCAAAAGTTTTATTTTGCAAAACAACACATATATGGAATATTTATGTACAAAGCTGCACTTGAAATCTTTGGGTTCTGTTATTTTGTGCATGGGTACAAGATCAACATTTTATTCTCCAATGGTTGTATCAACTTGGAAAAAGTTCTTTTTTTTTCTTTTTTTTTGCAGTTAGTTAAATTTGCTTATTTATTCATCCAGAAATTGACTAAGAACATTAAAAATATGCATCTGCATTTTAAATTACTGTCATTGGTTTTAAATATTTTTCAAACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

707

Amino Acids

81.31

Weight (kDa)

8.93

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	74 - 155	5.6e-16	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	705, 1340, 1767
AasI	GACNNNNNNGTC	1 cut(s)	239
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	2 cut(s)	87, 1766
AccB1I	GGYRCC	1 cut(s)	404
AccBSI	CCGCTC	2 cut(s)	159, 334
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
AccIII	TCCGGA	1 cut(s)	437
AclWI	GGATC	5 cut(s)	569, 1221, 1532, 1591, 1656
AcoI	YGGCCR	2 cut(s)	178, 1757
AcsI	RAATTY	1 cut(s)	2021
AcuI	CTGAAG	2 cut(s)	1521, 1823
AcvI	CACGTG	2 cut(s)	631, 655
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	5 cut(s)	277, 641, 888, 1892, 1940
AfiI	CCNNNNNNNGG	5 cut(s)	176, 265, 836, 1031, 1548
AgsI	TTSAA	9 cut(s)	523, 683, 943, 994, 1479, 1724, 1819, 1907, 2114
AjnI	CCWGG	3 cut(s)	48, 258, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	205, 397, 1045, 1514, 1898
AluI	AGCT	5 cut(s)	205, 397, 1045, 1514, 1898
Alw21I	GWGCWC	2 cut(s)	1200, 1801
Alw26I	GTCTC	2 cut(s)	103, 1476
Alw44I	GTGCAC	1 cut(s)	1797
AlwI	GGATC	5 cut(s)	569, 1221, 1532, 1591, 1656
Ama87I	CYCGRG	1 cut(s)	1579
Aor13HI	TCCGGA	1 cut(s)	437
AoxI	GGCC	5 cut(s)	178, 261, 1020, 1316, 1757
ApaLI	GTGCAC	1 cut(s)	1797
ApeKI	GCWGC	4 cut(s)	117, 670, 1322, 1898
ApoI	RAATTY	1 cut(s)	2021
Asp700I	GAANNNNTTC	3 cut(s)	989, 1239, 1986
AspLEI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
AspS9I	GGNCC	6 cut(s)	52, 193, 473, 1021, 1266, 1316
AsuC2I	CCSGG	2 cut(s)	548, 982
AsuHPI	GGTGA	4 cut(s)	115, 217, 746, 1795
AvaI	CYCGRG	1 cut(s)	1579
AvaII	GGWCC	4 cut(s)	52, 193, 473, 1266
BaeGI	GKGCMC	2 cut(s)	258, 1801
BalI	TGGCCA	1 cut(s)	1759
BanI	GGYRCC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BbrPI	CACGTG	2 cut(s)	631, 655
Bbv12I	GWGCWC	2 cut(s)	1200, 1801
BbvI	GCAGC	4 cut(s)	104, 657, 1309, 1885
BccI	CCATC	4 cut(s)	335, 771, 1098, 1169
BceAI	ACGGC	2 cut(s)	58, 577
BciT130I	CCWGG	3 cut(s)	50, 260, 644
BciVI	GTATCC	1 cut(s)	1446
BcnI	CCSGG	2 cut(s)	548, 982
BcoDI	GTCTC	2 cut(s)	103, 1476
BfaI	CTAG	1 cut(s)	1652
BfmI	CTRYAG	2 cut(s)	553, 1303
BfoI	RGCGCY	2 cut(s)	109, 393
BfuAI	ACCTGC	2 cut(s)	87, 1766
BfuI	GTATCC	1 cut(s)	1446
BglI	GCCNNNNNGGC	1 cut(s)	269
BlpI	GCTNAGC	2 cut(s)	393, 1046
Bme1390I	CCNGG	5 cut(s)	50, 260, 548, 644, 982
Bme18I	GGWCC	4 cut(s)	52, 193, 473, 1266
BmeT110I	CYCGRG	1 cut(s)	1579
BmgT120I	GGNCC	6 cut(s)	52, 193, 473, 1021, 1266, 1316
BmrFI	CCNGG	5 cut(s)	50, 260, 548, 644, 982
BmsI	GCATC	9 cut(s)	163, 349, 573, 657, 948, 1130, 1411, 1677, 2080
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
Bpu10I	CCTNAGC	2 cut(s)	351, 1194
Bpu1102I	GCTNAGC	2 cut(s)	393, 1046
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	2 cut(s)	548, 982
BsaAI	YACGTR	3 cut(s)	631, 655, 1394
BsaBI	GATNNNNATC	1 cut(s)	1242
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	8 cut(s)	181, 189, 258, 264, 345, 1269, 1277, 1286
BsaWI	WCCGGW	2 cut(s)	437, 479
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 1258, 1288, 1835, 1865
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 265, 836, 1031, 1548
Bse118I	RCCGGY	3 cut(s)	149, 176, 569
Bse8I	GATNNNNATC	1 cut(s)	1242
BseAI	TCCGGA	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	50, 260, 644
BseDI	CCNNGG	8 cut(s)	181, 189, 258, 264, 345, 1269, 1277, 1286
BseGI	GGATG	8 cut(s)	327, 340, 672, 782, 916, 1489, 1668, 2037
BseJI	GATNNNNATC	1 cut(s)	1242
BseLI	CCNNNNNNNGG	5 cut(s)	176, 265, 836, 1031, 1548
BseMII	CTCAG	5 cut(s)	320, 384, 702, 1185, 1634
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	1375
BseSI	GKGCMC	2 cut(s)	258, 1801
BseXI	GCAGC	4 cut(s)	104, 657, 1309, 1885
BseYI	CCCAGC	3 cut(s)	720, 1262, 1510
BsgI	GTGCAG	3 cut(s)	23, 130, 1884
Bsh1236I	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
BshFI	GGCC	5 cut(s)	180, 263, 1022, 1318, 1759
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	1200, 1801
BsiHKCI	CYCGRG	1 cut(s)	1579
BsiSI	CCGG	9 cut(s)	150, 177, 438, 453, 480, 548, 570, 659, 982
BsiWI	CGTACG	2 cut(s)	275, 886
BslFI	GGGAC	2 cut(s)	578, 1279
BslI	CCNNNNNNNGG	5 cut(s)	176, 265, 836, 1031, 1548
BsmAI	GTCTC	2 cut(s)	103, 1476
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	578, 1279
BsmI	GAATGC	1 cut(s)	997
BsnI	GGCC	5 cut(s)	180, 263, 1022, 1318, 1759
BsoBI	CYCGRG	1 cut(s)	1579
Bsp1286I	GDGCHC	3 cut(s)	258, 1200, 1801
Bsp13I	TCCGGA	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	1890
Bsp143I	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
Bsp1720I	GCTNAGC	2 cut(s)	393, 1046
Bsp19I	CCATGG	1 cut(s)	1286
BspANI	GGCC	5 cut(s)	180, 263, 1022, 1318, 1759
BspCNI	CTCAG	5 cut(s)	319, 385, 703, 1186, 1633
BspEI	TCCGGA	1 cut(s)	437
BspFNI	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
BspHI	TCATGA	1 cut(s)	967
BspMI	ACCTGC	2 cut(s)	87, 1766
BspPI	GGATC	5 cut(s)	569, 1221, 1532, 1591, 1656
BspT107I	GGYRCC	1 cut(s)	404
BsrBI	CCGCTC	2 cut(s)	159, 334
BsrFI	RCCGGY	3 cut(s)	149, 176, 569
BsrGI	TGTACA	1 cut(s)	1890
BssAI	RCCGGY	3 cut(s)	149, 176, 569
BssECI	CCNNGG	8 cut(s)	181, 189, 258, 264, 345, 1269, 1277, 1286
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	3 cut(s)	1269, 1277, 1286
Bst2UI	CCWGG	3 cut(s)	50, 260, 644
Bst6I	CTCTTC	2 cut(s)	389, 1085
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	1297
BstAUI	TGTACA	1 cut(s)	1890
BstBAI	YACGTR	3 cut(s)	631, 655, 1394
BstC8I	GCNNGC	6 cut(s)	73, 130, 178, 336, 571, 1320
BstDSI	CCRYGG	4 cut(s)	181, 264, 345, 1286
BstF5I	GGATG	8 cut(s)	327, 340, 672, 782, 916, 1489, 1668, 2037
BstFNI	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
BstH2I	RGCGCY	2 cut(s)	109, 393
BstHHI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
BstKTI	GATC	9 cut(s)	577, 765, 1168, 1216, 1540, 1586, 1651, 1700, 1947
BstMAI	GTCTC	2 cut(s)	103, 1476
BstMBI	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
BstMWI	GCNNNNNNNGC	9 cut(s)	79, 114, 269, 344, 431, 493, 570, 1288, 1297
BstNI	CCWGG	3 cut(s)	50, 260, 644
BstNSI	RCATGY	1 cut(s)	1556
BstSCI	CCNGG	5 cut(s)	48, 258, 546, 642, 980
BstSFI	CTRYAG	2 cut(s)	553, 1303
BstSLI	GKGCMC	2 cut(s)	258, 1801
BstSNI	TACGTA	1 cut(s)	1394
BstUI	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
BstV1I	GCAGC	4 cut(s)	104, 657, 1309, 1885
BstX2I	RGATCY	2 cut(s)	1213, 1648
BstXI	CCANNNNNNTGG	1 cut(s)	1518
BstYI	RGATCY	2 cut(s)	1213, 1648
BsuI	GTATCC	1 cut(s)	1446
BsuRI	GGCC	5 cut(s)	180, 263, 1022, 1318, 1759
BtgI	CCRYGG	4 cut(s)	181, 264, 345, 1286
BtgZI	GCGATG	1 cut(s)	550
BtsCI	GGATG	8 cut(s)	327, 340, 672, 782, 916, 1489, 1668, 2037
BtsIMutI	CAGTG	6 cut(s)	314, 1221, 1300, 1379, 1586, 1799
BveI	ACCTGC	2 cut(s)	87, 1766
Cac8I	GCNNGC	6 cut(s)	73, 130, 178, 336, 571, 1320
CciI	TCATGA	1 cut(s)	967
CfoI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
Cfr10I	RCCGGY	3 cut(s)	149, 176, 569
Cfr13I	GGNCC	6 cut(s)	52, 193, 473, 1021, 1266, 1316
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	4 cut(s)	235, 271, 656, 856
Csp6I	GTAC	5 cut(s)	276, 640, 887, 1891, 1939
CviQI	GTAC	5 cut(s)	276, 640, 887, 1891, 1939
DpnI	GATC	9 cut(s)	576, 764, 1167, 1215, 1539, 1585, 1650, 1699, 1946
DpnII	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
DraI	TTTAAA	3 cut(s)	1231, 2083, 2103
DraIII	CACNNNGTG	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	2 cut(s)	178, 1757
Eam1104I	CTCTTC	2 cut(s)	389, 1085
EarI	CTCTTC	2 cut(s)	389, 1085
EciI	GGCGGA	2 cut(s)	20, 101
Eco105I	TACGTA	1 cut(s)	1394
Eco130I	CCWWGG	3 cut(s)	1269, 1277, 1286
Eco47I	GGWCC	4 cut(s)	52, 193, 473, 1266
Eco57I	CTGAAG	2 cut(s)	1521, 1823
Eco72I	CACGTG	2 cut(s)	631, 655
Eco88I	CYCGRG	1 cut(s)	1579
EcoRII	CCWGG	3 cut(s)	48, 258, 642
EcoT14I	CCWWGG	3 cut(s)	1269, 1277, 1286
EcoT22I	ATGCAT	2 cut(s)	1756, 2073
ErhI	CCWWGG	3 cut(s)	1269, 1277, 1286
Esp3I	CGTCTC	1 cut(s)	103
FalI	AAGNNNNNCTT	6 cut(s)	590, 622, 923, 955, 1887, 1919
FaqI	GGGAC	2 cut(s)	578, 1279
FauI	CCCGC	4 cut(s)	164, 339, 352, 427
FauNDI	CATATG	3 cut(s)	759, 1327, 1750
FblI	GTMKAC	1 cut(s)	552
FokI	GGATG	8 cut(s)	314, 327, 679, 789, 923, 1496, 1655, 2024
FspBI	CTAG	1 cut(s)	1652
GlaI	GCGC	9 cut(s)	72, 74, 107, 273, 281, 339, 391, 505, 651
GsaI	CCCAGC	3 cut(s)	724, 1266, 1514
HaeII	RGCGCY	2 cut(s)	109, 393
HaeIII	GGCC	5 cut(s)	180, 263, 1022, 1318, 1759
HapII	CCGG	9 cut(s)	150, 177, 438, 453, 480, 548, 570, 659, 982
HgaI	GACGC	4 cut(s)	235, 271, 656, 856
HhaI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
HinP1I	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
HincII	GTYRAC	2 cut(s)	142, 846
HindII	GTYRAC	2 cut(s)	142, 846
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	5 cut(s)	233, 301, 317, 591, 1577
HpaII	CCGG	9 cut(s)	150, 177, 438, 453, 480, 548, 570, 659, 982
HphI	GGTGA	4 cut(s)	115, 217, 746, 1795
Hpy166II	GTNNAC	6 cut(s)	142, 528, 553, 846, 1111, 1799
Hpy8I	GTNNAC	6 cut(s)	142, 528, 553, 846, 1111, 1799
Hpy99I	CGWCG	4 cut(s)	16, 19, 22, 251
HpyAV	CCTTC	6 cut(s)	544, 580, 613, 687, 691, 875
HpyCH4IV	ACGT	6 cut(s)	14, 240, 630, 654, 1253, 1393
HpyF10VI	GCNNNNNNNGC	9 cut(s)	79, 114, 269, 344, 431, 493, 570, 1288, 1297
HpySE526I	ACGT	6 cut(s)	14, 240, 630, 654, 1253, 1393
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
Kpn2I	TCCGGA	1 cut(s)	437
KroI	GCCGGC	2 cut(s)	176, 569
KroNI	GCCGGC	2 cut(s)	178, 571
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
LmnI	GCTCC	8 cut(s)	22, 158, 164, 185, 210, 811, 1279, 1843
Lsp1109I	GCAGC	4 cut(s)	104, 657, 1309, 1885
LweI	GCATC	9 cut(s)	163, 349, 573, 657, 948, 1130, 1411, 1677, 2080
MaeI	CTAG	1 cut(s)	1652
MaeII	ACGT	6 cut(s)	14, 240, 630, 654, 1253, 1393
MaeIII	GTNAC	4 cut(s)	626, 1006, 1486, 1783
MalI	GATC	9 cut(s)	576, 764, 1167, 1215, 1539, 1585, 1650, 1699, 1946
MbiI	CCGCTC	2 cut(s)	159, 334
MboI	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
MfeI	CAATTG	1 cut(s)	1491
MflI	RGATCY	2 cut(s)	1213, 1648
MhlI	GDGCHC	3 cut(s)	258, 1200, 1801
MlsI	TGGCCA	1 cut(s)	1759
MluCI	AATT	8 cut(s)	683, 715, 1308, 1428, 1491, 2021, 2045, 2084
MluNI	TGGCCA	1 cut(s)	1759
MlyI	GAGTC	4 cut(s)	227, 326, 600, 1571
MmeI	TCCRAC	2 cut(s)	186, 1051
Mox20I	TGGCCA	1 cut(s)	1759
Mph1103I	ATGCAT	2 cut(s)	1756, 2073
MreI	CGCCGGCG	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	437
MroNI	GCCGGC	2 cut(s)	176, 569
MroXI	GAANNNNTTC	3 cut(s)	989, 1239, 1986
MscI	TGGCCA	1 cut(s)	1759
MseI	TTAA	8 cut(s)	510, 1230, 1427, 1431, 2019, 2061, 2082, 2102
MslI	CAYNNNNRTG	4 cut(s)	1413, 1419, 1753, 1875
Msp20I	TGGCCA	1 cut(s)	1759
MspA1I	CMGCKG	2 cut(s)	117, 347
MspI	CCGG	9 cut(s)	150, 177, 438, 453, 480, 548, 570, 659, 982
MspR9I	CCNGG	5 cut(s)	50, 260, 548, 644, 982
MunI	CAATTG	1 cut(s)	1491
Mva1269I	GAATGC	1 cut(s)	997
MvaI	CCWGG	3 cut(s)	50, 260, 644
MvnI	CGCG	8 cut(s)	73, 274, 280, 282, 338, 347, 650, 834
MwoI	GCNNNNNNNGC	9 cut(s)	79, 114, 269, 344, 431, 493, 570, 1288, 1297
NaeI	GCCGGC	2 cut(s)	178, 571
NciI	CCSGG	2 cut(s)	548, 982
NcoI	CCATGG	1 cut(s)	1286
NdeI	CATATG	3 cut(s)	759, 1327, 1750
NdeII	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
NgoMIV	GCCGGC	2 cut(s)	176, 569
NmeAIII	GCCGAG	2 cut(s)	214, 840
NmuCI	GTSAC	3 cut(s)	626, 1006, 1783
NsiI	ATGCAT	2 cut(s)	1756, 2073
NspI	RCATGY	1 cut(s)	1556
PacI	TTAATTAA	1 cut(s)	1431
PagI	TCATGA	1 cut(s)	967
PauI	GCGCGC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	997
PdiI	GCCGGC	2 cut(s)	178, 571
PdmI	GAANNNNTTC	3 cut(s)	989, 1239, 1986
PfeI	GAWTC	1 cut(s)	301
Pfl23II	CGTACG	2 cut(s)	275, 886
PflFI	GACNNNGTC	3 cut(s)	16, 95, 137
PleI	GAGTC	4 cut(s)	227, 325, 599, 1571
PmaCI	CACGTG	2 cut(s)	631, 655
PmlI	CACGTG	2 cut(s)	631, 655
PpsI	GAGTC	4 cut(s)	227, 325, 599, 1571
Ppu21I	YACGTR	3 cut(s)	631, 655, 1394
PsiI	TTATAA	3 cut(s)	705, 1340, 1767
Psp6I	CCWGG	3 cut(s)	48, 258, 642
PspCI	CACGTG	2 cut(s)	631, 655
PspFI	CCCAGC	3 cut(s)	720, 1262, 1510
PspGI	CCWGG	3 cut(s)	48, 258, 642
PspLI	CGTACG	2 cut(s)	275, 886
PspPI	GGNCC	6 cut(s)	52, 193, 473, 1021, 1266, 1316
PsuI	RGATCY	2 cut(s)	1213, 1648
PsyI	GACNNNGTC	3 cut(s)	16, 95, 137
PteI	GCGCGC	1 cut(s)	71
RsaI	GTAC	5 cut(s)	277, 641, 888, 1892, 1940
RsaNI	GTAC	5 cut(s)	276, 640, 887, 1891, 1939
RseI	CAYNNNNRTG	4 cut(s)	1413, 1419, 1753, 1875
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	8 cut(s)	510, 1230, 1427, 1431, 2019, 2061, 2082, 2102
Sau3AI	GATC	9 cut(s)	574, 762, 1165, 1213, 1537, 1583, 1648, 1697, 1944
Sau96I	GGNCC	6 cut(s)	52, 193, 473, 1021, 1266, 1316
SchI	GAGTC	4 cut(s)	227, 326, 600, 1571
ScrFI	CCNGG	5 cut(s)	50, 260, 548, 644, 982
SduI	GDGCHC	3 cut(s)	258, 1200, 1801
SfaNI	GCATC	9 cut(s)	163, 349, 573, 657, 948, 1130, 1411, 1677, 2080
SfcI	CTRYAG	2 cut(s)	553, 1303
Sfr303I	CCGCGG	1 cut(s)	348
SgrAI	CRCCGGYG	1 cut(s)	569
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	4 cut(s)	52, 193, 473, 1266
SmiMI	CAYNNNNRTG	4 cut(s)	1413, 1419, 1753, 1875
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
SnaBI	TACGTA	1 cut(s)	1394
Sse9I	AATT	8 cut(s)	683, 715, 1308, 1428, 1491, 2021, 2045, 2084
SspI	AATATT	2 cut(s)	1884, 2107
SspMI	CTAG	1 cut(s)	1652
StyD4I	CCNGG	5 cut(s)	48, 258, 546, 642, 980
StyI	CCWWGG	3 cut(s)	1269, 1277, 1286
TaiI	ACGT	6 cut(s)	17, 243, 633, 657, 1256, 1396
TaqI	TCGA	4 cut(s)	66, 516, 537, 1218
TasI	AATT	8 cut(s)	683, 715, 1308, 1428, 1491, 2021, 2045, 2084
TatI	WGTACW	1 cut(s)	1890
TauI	GCSGC	6 cut(s)	117, 350, 425, 676, 837, 840
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	8 cut(s)	510, 1230, 1427, 1431, 2019, 2061, 2082, 2102
Tru9I	TTAA	8 cut(s)	510, 1230, 1427, 1431, 2019, 2061, 2082, 2102
TscAI	CASTG	6 cut(s)	314, 1228, 1307, 1379, 1593, 1806
TseFI	GTSAC	3 cut(s)	626, 1006, 1783
TseI	GCWGC	4 cut(s)	117, 670, 1322, 1898
Tsp45I	GTSAC	3 cut(s)	626, 1006, 1783
TspDTI	ATGAA	8 cut(s)	987, 1070, 1232, 1437, 1604, 1702, 1734, 2026
TspGWI	ACGGA	3 cut(s)	198, 598, 705
TspRI	CASTG	6 cut(s)	314, 1228, 1307, 1379, 1593, 1806
Tth111I	GACNNNGTC	3 cut(s)	16, 95, 137
VneI	GTGCAC	1 cut(s)	1797
VpaK11BI	GGWCC	4 cut(s)	52, 193, 473, 1266
XapI	RAATTY	1 cut(s)	2021
XceI	RCATGY	1 cut(s)	1556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1284
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	3 cut(s)	989, 1239, 1986
XspI	CTAG	1 cut(s)	1652
ZraI	GACGTC	1 cut(s)	15
Zsp2I	ATGCAT	2 cut(s)	1756, 2073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.