FvH4_5g28800

phospholipase D

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
19928274 .. 19934287
6014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28800.t1

Sequence Viewer

Length: 1611 bp
ATGTTTGCAACGTCAGTTATGGTTTCAAGTTCACATGTGAAAATGGGAAATGAGGATCACCATGACAGTCCAACCCTAAGAAATGAGAGTGAGGGTTCTAAAGAAAATATATTCCTCCATGGTGAACTAGATTTATGGATTATAGAAGCTAAATCTCTTCCAAATATGGATTTAACTTCAGAAAGAATGAGAAAGTGTTTTACCATGTTTGGAACTTGCTCTACTCCTTTTGGAAATCGGTCTACAAGAGCTCTTTCTAGAAAACGGCCTGCAATGATTACAAGTGACCCTTATGTTTCAGTTTGCCTAGCAGGAGCTACTGTAGCTCAAACTAGAATAATTTCAAACAGTGAAAATCCTTCATGGGAAGAACATTTTTGTGTTCCTGTTGCTCACCCTGTTATGAAGGTGGAGTTTCATGTTAAAGATAATGACGTTCTTGGAGCTGAACTTATTGGAGTAGTTGAGATATCTGTTGAAAAAATTATTTCCGGAAATACAATTAATGATTGGTTTCCCATCATTGGTAATCACGGAAACTGTTTGAAACCTTTTCCGGAATTACATATTTCTGTTCAGTTTAAGCCAGTTGAAAACAACCCTCTGTACAAGAATGGTGTTGGGGTCGGGCCAGAGTATAAAGGAGTTCCTAACACATATTTTCCACTTCGCAAAGGAGGGAGTGTCACTTTATACCAAGATGCTCATGTACCTAATGATATGTTACCTGAAATTTTACTTGATGGTGGAACCGTTTTTCAGCATAGACAGTGCTGGGAAGAAATATGTCATGCTATTTTGGAAGCTCAACATCTTATATATATTATTGGCTGGTCTGTATACCATCGTGTCAAGCTTGTAAGAGAACCAACCAAGCCACTACCTTCTGGAGGAGAATTAGAACTCGGAGAGTTGCTCAAATACAAGTCACAAGAAGGAGTCCGCGTTGTTATGTTGATTTGGGATGATAAAACATCGCACGACAAGTTTCTACTCAAAACAGAAGGTGTCATGGCAACACATGATGAGGAAACAAAAAAGTTTTTCAAACATTCTAGTGTTCATTGTGTACTTTCTCCTCGTTATGCAAGCAATAAGCTTAGCATTTTCAAACAACAGAAGTGTGTGATTCTTGACACAGCTTCTGGGAGTAACAGGAAAATAACGGCTTTCATTGGTGGTCTTGATTTATGTGACGGCCGTTATGATACTCCTGAACATAGACTATTTAATGAACTTGACACGATCTTTGAAAATGATATTCATAACCCTACATTTCCGAATCTTGTTTGTGGGAAGAATTTGAAAATCGACAAGAGTATCCATGTTGCATATATCAAGGCAATAAGATCAGCCCAACATTTTATATACATTGAAAATCAGTACTTTGTTGGATCTTCGTTTTATTGGCCTACATACAAAAATGCAGCAGCCATATTTCCTGACAGCTGCCAAACTTCCTCCGTCGGCACAGTAATCTCCGGCATTGGTAGGTGGAACGTATGGTCCCATGACTCAGCTATTCTCCCTCCACCGTCGAGCACTTCAGAAAACCCAAATTTGACGTTGACCGGCGAGAGCATTGAAGCTACCGCTTCCTTGAGATTTTGA

Protein Analysis

537

Amino Acids

60.07

Weight (kDa)

6.29

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 42 - 173 6.4e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 242, 840
AccII CGCG 1 cut(s) 945
AccIII TCCGGA 2 cut(s) 491, 556
AciI CCGC 2 cut(s) 943, 1593
AclWI GGATC 2 cut(s) 63, 1402
AcoI YGGCCR 1 cut(s) 1198
AcsI RAATTY 3 cut(s) 732, 1300, 1558
AcuI CTGAAG 2 cut(s) 162, 1530
AfaI GTAC 4 cut(s) 608, 711, 1071, 1385
AfiI CCNNNNNNNGG 2 cut(s) 524, 890
AflIII ACRYGT 1 cut(s) 34
AloI GAACNNNNNNTCC 2 cut(s) 1490, 1522
Alw21I GWGCWC 2 cut(s) 253, 1544
AlwI GGATC 2 cut(s) 63, 1402
AlwNI CAGNNNCTG 1 cut(s) 1145
Aor13HI TCCGGA 2 cut(s) 491, 556
AoxI GGCC 4 cut(s) 266, 629, 1198, 1409
ApeKI GCWGC 3 cut(s) 1427, 1430, 1449
ApoI RAATTY 3 cut(s) 732, 1300, 1558
ArsI GACNNNNNNTTYG 2 cut(s) 1232, 1264
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 629, 1506
AsuHPI GGTGA 3 cut(s) 50, 134, 386
AvaII GGWCC 1 cut(s) 1506
BaeI ACNNNNGTAYC 2 cut(s) 1303, 1336
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 253, 1544
BbvI GCAGC 3 cut(s) 1436, 1439, 1442
BccI CCATC 3 cut(s) 527, 737, 852
BceAI ACGGC 4 cut(s) 281, 1182, 1185, 1213
BciVI GTATCC 1 cut(s) 1331
BfaI CTAG 5 cut(s) 128, 258, 308, 333, 1056
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 1331
BisI GCNGC 3 cut(s) 1428, 1431, 1450
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 3 cut(s) 1429, 1432, 1451
BmcAI AGTACT 1 cut(s) 1385
Bme18I GGWCC 1 cut(s) 1506
BmgT120I GGNCC 2 cut(s) 629, 1506
BmiI GGNNCC 2 cut(s) 751, 1508
BmsI GCATC 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 1 cut(s) 909
Bpu1102I GCTNAGC 1 cut(s) 1100
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 2 cut(s) 491, 556
BsaXI ACNNNNNCTCC 6 cut(s) 306, 336, 669, 699, 930, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 890
Bse118I RCCGGY 1 cut(s) 1571
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 2 cut(s) 491, 556
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 970
BseLI CCNNNNNNNGG 2 cut(s) 524, 890
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 1530
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 906, 1068
BseX3I CGGCCG 1 cut(s) 1198
BseXI GCAGC 3 cut(s) 1436, 1439, 1442
BseYI CCCAGC 1 cut(s) 774
Bsh1236I CGCG 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 1201
BshFI GGCC 4 cut(s) 268, 631, 1200, 1411
BsiEI CGRYCG 1 cut(s) 1201
BsiHKAI GWGCWC 2 cut(s) 253, 1544
BsiSI CCGG 4 cut(s) 492, 557, 1482, 1572
BslFI GGGAC 1 cut(s) 1492
BslI CCNNNNNNNGG 2 cut(s) 524, 890
BsmFI GGGAC 1 cut(s) 1492
BsnI GGCC 4 cut(s) 268, 631, 1200, 1411
Bsp1286I GDGCHC 2 cut(s) 253, 1544
Bsp13I TCCGGA 2 cut(s) 491, 556
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 4 cut(s) 55, 1245, 1349, 1394
Bsp1720I GCTNAGC 1 cut(s) 1100
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 2 cut(s) 943, 1593
BspANI GGCC 4 cut(s) 268, 631, 1200, 1411
BspCNI CTCAG 1 cut(s) 1529
BspEI TCCGGA 2 cut(s) 491, 556
BspFNI CGCG 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 751, 1508
BspPI GGATC 2 cut(s) 63, 1402
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 1571
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 1571
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 55, 1245, 1349, 1394
BssNAI GTATAC 1 cut(s) 841
BssT1I CCWWGG 1 cut(s) 118
Bst1107I GTATAC 1 cut(s) 841
Bst4CI ACNGT 8 cut(s) 68, 322, 350, 542, 754, 771, 1474, 1536
Bst6I CTCTTC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 270, 1090
BstDEI CTNAG 3 cut(s) 77, 1100, 1516
BstDSI CCRYGG 1 cut(s) 118
BstENI CCTNNNNNAGG 1 cut(s) 888
BstF5I GGATG 1 cut(s) 970
BstFNI CGCG 1 cut(s) 945
BstKTI GATC 4 cut(s) 58, 1248, 1352, 1397
BstMBI GATC 4 cut(s) 55, 1245, 1349, 1394
BstMCI CGRYCG 1 cut(s) 1201
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 945
BstV1I GCAGC 3 cut(s) 1436, 1439, 1442
BstX2I RGATCY 1 cut(s) 1394
BstYI RGATCY 1 cut(s) 1394
BstZ17I GTATAC 1 cut(s) 841
BstZI CGGCCG 1 cut(s) 1198
BsuI GTATCC 1 cut(s) 1331
BsuRI GGCC 4 cut(s) 268, 631, 1200, 1411
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 960
BtsCI GGATG 1 cut(s) 970
BtsIMutI CAGTG 2 cut(s) 355, 776
Cac8I GCNNGC 2 cut(s) 270, 1090
CaiI CAGNNNCTG 1 cut(s) 1145
Cfr10I RCCGGY 1 cut(s) 1571
Cfr13I GGNCC 2 cut(s) 629, 1506
Csp6I GTAC 4 cut(s) 607, 710, 1070, 1384
CviQI GTAC 4 cut(s) 607, 710, 1070, 1384
DdeI CTNAG 3 cut(s) 77, 1100, 1516
DpnI GATC 4 cut(s) 57, 1247, 1351, 1396
DpnII GATC 4 cut(s) 55, 1245, 1349, 1394
EaeI YGGCCR 1 cut(s) 1198
EagI CGGCCG 1 cut(s) 1198
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 251
EclXI CGGCCG 1 cut(s) 1198
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 1506
Eco52I CGGCCG 1 cut(s) 1198
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 162, 1530
EcoICRI GAGCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 888
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 118
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 1492
FblI GTMKAC 2 cut(s) 242, 840
Fnu4HI GCNGC 3 cut(s) 1428, 1431, 1450
FokI GGATG 1 cut(s) 977
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 1428, 1431, 1450
FspBI CTAG 5 cut(s) 128, 258, 308, 333, 1056
GluI GCNGC 3 cut(s) 1428, 1431, 1450
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 268, 631, 1200, 1411
HapII CCGG 4 cut(s) 492, 557, 1482, 1572
HincII GTYRAC 1 cut(s) 1569
HindII GTYRAC 1 cut(s) 1569
HindIII AAGCTT 2 cut(s) 854, 1097
HinfI GANTC 4 cut(s) 939, 1129, 1282, 1514
HpaII CCGG 4 cut(s) 492, 557, 1482, 1572
HphI GGTGA 3 cut(s) 50, 134, 386
Hpy166II GTNNAC 6 cut(s) 32, 125, 243, 841, 1070, 1569
Hpy188I TCNGA 4 cut(s) 181, 908, 1281, 1549
Hpy188III TCNNGA 8 cut(s) 258, 492, 557, 888, 1133, 1184, 1214, 1442
Hpy8I GTNNAC 6 cut(s) 32, 125, 243, 841, 1070, 1569
Hpy99I CGWCG 2 cut(s) 1469, 1540
HpyAV CCTTC 5 cut(s) 369, 400, 894, 929, 998
HpyCH4III ACNGT 8 cut(s) 68, 322, 350, 542, 754, 771, 1474, 1536
HpyCH4IV ACGT 4 cut(s) 11, 435, 1500, 1565
HpyCH4V TGCA 5 cut(s) 8, 272, 1088, 1331, 1427
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 3 cut(s) 77, 1100, 1516
HpySE526I ACGT 4 cut(s) 11, 435, 1500, 1565
Kpn2I TCCGGA 2 cut(s) 491, 556
Kzo9I GATC 4 cut(s) 55, 1245, 1349, 1394
LmnI GCTCC 2 cut(s) 314, 443
Lsp1109I GCAGC 3 cut(s) 1436, 1439, 1442
LweI GCATC 1 cut(s) 691
MaeI CTAG 5 cut(s) 128, 258, 308, 333, 1056
MaeII ACGT 4 cut(s) 11, 435, 1500, 1565
MaeIII GTNAC 6 cut(s) 284, 685, 723, 927, 1151, 1193
MalI GATC 4 cut(s) 57, 1247, 1351, 1396
MboI GATC 4 cut(s) 55, 1245, 1349, 1394
MboII GAAGA 5 cut(s) 149, 380, 791, 1309, 1389
MflI RGATCY 1 cut(s) 1394
MhlI GDGCHC 2 cut(s) 253, 1544
MluCI AATT 8 cut(s) 339, 483, 501, 560, 732, 896, 1300, 1558
MlyI GAGTC 2 cut(s) 948, 1508
MmeI TCCRAC 2 cut(s) 95, 1372
MroI TCCGGA 2 cut(s) 491, 556
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 5 cut(s) 173, 423, 504, 582, 1230
MslI CAYNNNNRTG 2 cut(s) 378, 1056
MspA1I CMGCKG 1 cut(s) 1449
MspI CCGG 4 cut(s) 492, 557, 1482, 1572
MvnI CGCG 1 cut(s) 945
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 118
NdeII GATC 4 cut(s) 55, 1245, 1349, 1394
NlaIV GGNNCC 2 cut(s) 751, 1508
NmuCI GTSAC 4 cut(s) 284, 685, 927, 1193
NspI RCATGY 1 cut(s) 38
PciI ACATGT 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 1129, 1282
PkrI GCNGC 3 cut(s) 1429, 1432, 1451
PleI GAGTC 2 cut(s) 947, 1508
PpsI GAGTC 2 cut(s) 947, 1508
PscI ACATGT 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 751, 1508
PspPI GGNCC 2 cut(s) 629, 1506
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 1394
PvuII CAGCTG 1 cut(s) 1449
RsaI GTAC 4 cut(s) 608, 711, 1071, 1385
RsaNI GTAC 4 cut(s) 607, 710, 1070, 1384
RseI CAYNNNNRTG 2 cut(s) 378, 1056
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 5 cut(s) 173, 423, 504, 582, 1230
SatI GCNGC 3 cut(s) 1428, 1431, 1450
Sau3AI GATC 4 cut(s) 55, 1245, 1349, 1394
Sau96I GGNCC 2 cut(s) 629, 1506
ScaI AGTACT 1 cut(s) 1385
SchI GAGTC 2 cut(s) 948, 1508
SduI GDGCHC 2 cut(s) 253, 1544
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 1506
SmiMI CAYNNNNRTG 2 cut(s) 378, 1056
SmlI CTYRAG 1 cut(s) 1600
SmoI CTYRAG 1 cut(s) 1600
Sse9I AATT 8 cut(s) 339, 483, 501, 560, 732, 896, 1300, 1558
SsiI CCGC 2 cut(s) 943, 1593
SspMI CTAG 5 cut(s) 128, 258, 308, 333, 1056
SstI GAGCTC 1 cut(s) 253
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 8 cut(s) 68, 322, 350, 542, 754, 771, 1474, 1536
TaiI ACGT 4 cut(s) 14, 438, 1503, 1568
TaqI TCGA 2 cut(s) 1311, 1538
TaqII GACCGA 1 cut(s) 228
TasI AATT 8 cut(s) 339, 483, 501, 560, 732, 896, 1300, 1558
TatI WGTACW 3 cut(s) 606, 1069, 1383
TfiI GAWTC 2 cut(s) 1129, 1282
Tru1I TTAA 5 cut(s) 173, 423, 504, 582, 1230
Tru9I TTAA 5 cut(s) 173, 423, 504, 582, 1230
TscAI CASTG 2 cut(s) 355, 776
TseFI GTSAC 4 cut(s) 284, 685, 927, 1193
TseI GCWGC 3 cut(s) 1427, 1430, 1449
Tsp45I GTSAC 4 cut(s) 284, 685, 927, 1193
TspDTI ATGAA 7 cut(s) 351, 407, 419, 1052, 1162, 1248, 1253
TspGWI ACGGA 2 cut(s) 549, 1453
TspRI CASTG 2 cut(s) 355, 776
VpaK11BI GGWCC 1 cut(s) 1506
VspI ATTAAT 1 cut(s) 504
XagI CCTNNNNNAGG 1 cut(s) 888
XapI RAATTY 3 cut(s) 732, 1300, 1558
XbaI TCTAGA 1 cut(s) 257
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 242, 840
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 5 cut(s) 128, 258, 308, 333, 1056
ZrmI AGTACT 1 cut(s) 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.