Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

5652478 .. 5652702

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTTCTTCGTAATAGAGTTATCTTTCCGGTATGTCACCACAATTGTAAAGCGAATGGAGTAGCCAGTAGAGCACTCTTCGCTAGTCGGTGCTTGTTAGAATACATTGTTTTAGTTGAGACTCTTGTTATTATCTCAGGAAGTTCTCTTGATGCGTTTTGTAATCTGGGGTATAGGCACTATGTACCCCTCATGTATTCTGCAGTTTCATTAATCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

74

Amino Acids

8.26

Weight (kDa)

8.86

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	186
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	113
AseI	ATTAAT	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstSFI	CTRYAG	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	34, 174, 183, 194
FatI	CATG	1 cut(s)	192
FspBI	CTAG	1 cut(s)	84
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	138, 149
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	42, 79, 123, 152
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	212
MspI	CCGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NlaIII	CATG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	212
SchI	GAGTC	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	201
SgeI	CNNG	9 cut(s)	41, 78, 96, 106, 137, 150, 161, 179, 205
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	84
TasI	AATT	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	198
VspI	ATTAAT	1 cut(s)	212
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.