Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414259.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

451 .. 1362

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggcggaagataagtcagaaccattggtggtgtaccttcacggcaacctggatttgaaaatcatagaggcgcgatatttgcccaacatggacatgctctccgagcgattccggcgattgttctcggcctgcagcaagccattctcgagccctaaacagcaccgcagtcaccataaaatcatcaccagcgacccttacgtcacggtctgcctcgccggagctaccgtcgccaggacgcgcgtgatctccaactcccagaacccggaatggaaggagcatttcaagatccctctcgcccaccccgtctcgcaagtcgagttctacgtcaaagacaacgacatgttcggcgccgatttaatcggcgtcgcgtccgtctcggcgcagcgaatcctctccggcgagacgatcagcgattggtttccgataatcgggccgttggggaagccgccgaaaccggactcggcggttaggttggaaatgaggttcacgaaatgcgaggacaatccgttgtatcagtacggaatgtcccacgaacgtttcgggggagtccagaattgttactttccggcacggcgaggaggtcacgtgacgctgtaccaggacgcgcacgtgccggactcggtgatggaggacatagaattggacgacggggttcagtttgagcatggcaagtgctgggaggatatatgtcacgcaatcttggaggcccatcatttggtgtacattgtgggctggtccatttatcacaaggtcaaggtggtcagagagcccagtaagcccttgcccagcggcggcaatttgaatttgggggagttgctcaagtataaatcccaggaagggttgagagttttgttgctggtttgggatgataagacttctcacagcaagttcttcatcaatacggtgcgtttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

304

Amino Acids

34.6

Weight (kDa)

6.73

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccII	CGCG	5 cut(s)	73, 238, 240, 368, 605
AciI	CCGC	6 cut(s)	5, 163, 446, 464, 789, 792
AclI	AACGTT	1 cut(s)	535
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	802
AcvI	CACGTG	2 cut(s)	586, 610
AcyI	GRCGYC	2 cut(s)	348, 363
AfaI	GTAC	4 cut(s)	35, 518, 596, 722
AfiI	CCNNNNNNNGG	6 cut(s)	231, 262, 428, 715, 791, 837
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	58, 283, 802
AjnI	CCWGG	4 cut(s)	48, 230, 597, 831
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	310, 379, 395
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	3 cut(s)	126, 431, 705
ApeKI	GCWGC	2 cut(s)	132, 382
ApoI	RAATTY	1 cut(s)	802
AspLEI	GCGC	5 cut(s)	73, 240, 350, 382, 607
AspS9I	GGNCC	3 cut(s)	431, 706, 735
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	161, 175, 634
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	152, 771
BbrPI	CACGTG	2 cut(s)	586, 610
BbvI	GCAGC	2 cut(s)	144, 394
BccI	CCATC	2 cut(s)	619, 717
BceAI	ACGGC	3 cut(s)	58, 418, 587
BciT130I	CCWGG	4 cut(s)	50, 232, 599, 833
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	310, 379, 395
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	5 cut(s)	133, 383, 446, 790, 793
BlsI	GCNGC	5 cut(s)	134, 384, 447, 791, 794
Bme1390I	CCNGG	5 cut(s)	50, 232, 263, 599, 833
Bme18I	GGWCC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	431, 706, 735
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	5 cut(s)	50, 232, 263, 599, 833
BmrI	ACTGGG	1 cut(s)	765
BmuI	ACTGGG	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	2 cut(s)	586, 610
BsaHI	GRCGYC	2 cut(s)	348, 363
BsaJI	CCNNGG	1 cut(s)	831
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 210, 240, 570, 600
Bsc4I	CCNNNNNNNGG	6 cut(s)	231, 262, 428, 715, 791, 837
Bse1I	ACTGG	1 cut(s)	771
BseBI	CCWGG	4 cut(s)	50, 232, 599, 833
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	1 cut(s)	871
BseLI	CCNNNNNNNGG	6 cut(s)	231, 262, 428, 715, 791, 837
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	2 cut(s)	144, 394
BseYI	CCCAGC	2 cut(s)	675, 785
Bsh1236I	CGCG	5 cut(s)	73, 238, 240, 368, 605
BshFI	GGCC	3 cut(s)	128, 433, 707
BshNI	GGYRCC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	7 cut(s)	112, 216, 263, 396, 455, 566, 614
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	6 cut(s)	231, 262, 428, 715, 791, 837
BsmAI	GTCTC	3 cut(s)	310, 379, 395
BsmBI	CGTCTC	3 cut(s)	310, 379, 395
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	128, 433, 707
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	152, 771
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	243, 285, 405
BspACI	CCGC	6 cut(s)	5, 163, 446, 464, 789, 792
BspANI	GGCC	3 cut(s)	128, 433, 707
BspFNI	CGCG	5 cut(s)	73, 238, 240, 368, 605
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	3 cut(s)	243, 285, 405
BssNI	GRCGYC	2 cut(s)	348, 363
Bst2UI	CCWGG	4 cut(s)	50, 232, 599, 833
Bst4CI	ACNGT	3 cut(s)	205, 226, 904
BstACI	GRCGYC	2 cut(s)	348, 363
BstAUI	TGTACA	1 cut(s)	720
BstBAI	YACGTR	2 cut(s)	586, 610
BstC8I	GCNNGC	2 cut(s)	130, 137
BstF5I	GGATG	1 cut(s)	871
BstFNI	CGCG	5 cut(s)	73, 238, 240, 368, 605
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	5 cut(s)	73, 240, 350, 382, 607
BstKTI	GATC	3 cut(s)	246, 288, 408
BstMAI	GTCTC	3 cut(s)	310, 379, 395
BstMBI	GATC	3 cut(s)	243, 285, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 103, 112, 227, 775
BstNI	CCWGG	4 cut(s)	50, 232, 599, 833
BstNSI	RCATGY	2 cut(s)	97, 343
BstSCI	CCNGG	5 cut(s)	48, 230, 261, 597, 831
BstSFI	CTRYAG	1 cut(s)	130
BstUI	CGCG	5 cut(s)	73, 238, 240, 368, 605
BstV1I	GCAGC	2 cut(s)	144, 394
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	128, 433, 707
BtsCI	GGATG	1 cut(s)	871
Cac8I	GCNNGC	2 cut(s)	130, 137
CfoI	GCGC	5 cut(s)	73, 240, 350, 382, 607
Cfr13I	GGNCC	3 cut(s)	431, 706, 735
CseI	GACGC	5 cut(s)	244, 352, 357, 598, 611
Csp6I	GTAC	4 cut(s)	34, 517, 595, 721
CviAII	CATG	4 cut(s)	88, 94, 340, 665
CviQI	GTAC	4 cut(s)	34, 517, 595, 721
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	3 cut(s)	245, 287, 407
DpnII	GATC	3 cut(s)	243, 285, 405
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	152, 771
Eco47I	GGWCC	1 cut(s)	735
Eco72I	CACGTG	2 cut(s)	586, 610
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	4 cut(s)	48, 230, 597, 831
EcoT38I	GRGCYC	2 cut(s)	152, 771
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
Esp3I	CGTCTC	3 cut(s)	310, 379, 395
FaeI	CATG	4 cut(s)	91, 97, 343, 668
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	4 cut(s)	87, 93, 339, 664
Fnu4HI	GCNGC	5 cut(s)	133, 383, 446, 790, 793
FokI	GGATG	1 cut(s)	878
FriOI	GRGCYC	2 cut(s)	152, 771
Fsp4HI	GCNGC	5 cut(s)	133, 383, 446, 790, 793
GlaI	GCGC	5 cut(s)	72, 239, 349, 381, 606
GluI	GCNGC	5 cut(s)	133, 383, 446, 790, 793
GsaI	CCCAGC	2 cut(s)	679, 789
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	128, 433, 707
HapII	CCGG	7 cut(s)	112, 216, 263, 396, 455, 566, 614
HgaI	GACGC	5 cut(s)	244, 352, 357, 598, 611
HhaI	GCGC	5 cut(s)	73, 240, 350, 382, 607
Hin1I	GRCGYC	2 cut(s)	348, 363
Hin1II	CATG	4 cut(s)	91, 97, 343, 668
Hin6I	GCGC	5 cut(s)	71, 238, 348, 380, 605
HinP1I	GCGC	5 cut(s)	71, 238, 348, 380, 605
HinfI	GANTC	5 cut(s)	108, 387, 458, 546, 617
HpaII	CCGG	7 cut(s)	112, 216, 263, 396, 455, 566, 614
HphI	GGTGA	3 cut(s)	161, 175, 634
Hpy166II	GTNNAC	3 cut(s)	34, 486, 721
Hpy188I	TCNGA	4 cut(s)	19, 103, 423, 764
Hpy188III	TCNNGA	4 cut(s)	145, 283, 487, 550
Hpy8I	GTNNAC	3 cut(s)	34, 486, 721
Hpy99I	CGWCG	3 cut(s)	230, 368, 650
HpyAV	CCTTC	3 cut(s)	47, 265, 830
HpyCH4III	ACNGT	3 cut(s)	205, 226, 904
HpyCH4IV	ACGT	5 cut(s)	198, 324, 535, 585, 609
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 103, 112, 227, 775
HpySE526I	ACGT	5 cut(s)	198, 324, 535, 585, 609
Hsp92I	GRCGYC	2 cut(s)	348, 363
Hsp92II	CATG	4 cut(s)	91, 97, 343, 668
HspAI	GCGC	5 cut(s)	71, 238, 348, 380, 605
KasI	GGCGCC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	243, 285, 405
LmnI	GCTCC	2 cut(s)	218, 274
Lsp1109I	GCAGC	2 cut(s)	144, 394
MaeII	ACGT	5 cut(s)	198, 324, 535, 585, 609
MaeIII	GTNAC	6 cut(s)	167, 199, 557, 581, 586, 689
MalI	GATC	3 cut(s)	245, 287, 407
MboI	GATC	3 cut(s)	243, 285, 405
MboII	GAAGA	2 cut(s)	20, 883
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	152, 771
MluCI	AATT	4 cut(s)	553, 638, 796, 802
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	3 cut(s)	452, 555, 611
MmeI	TCCRAC	2 cut(s)	273, 453
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	789
MspI	CCGG	7 cut(s)	112, 216, 263, 396, 455, 566, 614
MspR9I	CCNGG	5 cut(s)	50, 232, 263, 599, 833
MvaI	CCWGG	4 cut(s)	50, 232, 599, 833
MvnI	CGCG	5 cut(s)	73, 238, 240, 368, 605
MwoI	GCNNNNNNNGC	5 cut(s)	79, 103, 112, 227, 775
NarI	GGCGCC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	3 cut(s)	243, 285, 405
NlaIII	CATG	4 cut(s)	91, 97, 343, 668
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	3 cut(s)	104, 356, 440
NmuCI	GTSAC	5 cut(s)	167, 199, 581, 586, 689
NspI	RCATGY	2 cut(s)	97, 343
PaeR7I	CTCGAG	1 cut(s)	145
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 321
PfeI	GAWTC	2 cut(s)	108, 387
PflMI	CCANNNNNTGG	1 cut(s)	715
PkrI	GCNGC	5 cut(s)	134, 384, 447, 791, 794
PleI	GAGTC	3 cut(s)	452, 554, 611
PluTI	GGCGCC	1 cut(s)	351
PmaCI	CACGTG	2 cut(s)	586, 610
PmlI	CACGTG	2 cut(s)	586, 610
PpsI	GAGTC	3 cut(s)	452, 554, 611
Ppu21I	YACGTR	2 cut(s)	586, 610
PscI	ACATGT	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	535
Psp6I	CCWGG	4 cut(s)	48, 230, 597, 831
PspCI	CACGTG	2 cut(s)	586, 610
PspFI	CCCAGC	2 cut(s)	675, 785
PspGI	CCWGG	4 cut(s)	48, 230, 597, 831
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	431, 706, 735
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	4 cut(s)	35, 518, 596, 722
RsaNI	GTAC	4 cut(s)	34, 517, 595, 721
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	5 cut(s)	133, 383, 446, 790, 793
Sau3AI	GATC	3 cut(s)	243, 285, 405
Sau96I	GGNCC	3 cut(s)	431, 706, 735
SchI	GAGTC	3 cut(s)	452, 555, 611
ScrFI	CCNGG	5 cut(s)	50, 232, 263, 599, 833
SduI	GDGCHC	2 cut(s)	152, 771
SfcI	CTRYAG	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	145, 818
SmoI	CTYRAG	2 cut(s)	145, 818
Sse9I	AATT	4 cut(s)	553, 638, 796, 802
SsiI	CCGC	6 cut(s)	5, 163, 446, 464, 789, 792
SspDI	GGCGCC	1 cut(s)	347
StyD4I	CCNGG	5 cut(s)	48, 230, 261, 597, 831
TaaI	ACNGT	3 cut(s)	205, 226, 904
TaiI	ACGT	5 cut(s)	201, 327, 538, 588, 612
TaqI	TCGA	2 cut(s)	146, 315
TasI	AATT	4 cut(s)	553, 638, 796, 802
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	3 cut(s)	448, 792, 795
TfiI	GAWTC	2 cut(s)	108, 387
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseFI	GTSAC	5 cut(s)	167, 199, 581, 586, 689
TseI	GCWGC	2 cut(s)	132, 382
Tsp45I	GTSAC	5 cut(s)	167, 199, 581, 586, 689
TspDTI	ATGAA	1 cut(s)	883
TspGWI	ACGGA	3 cut(s)	361, 495, 534
Van91I	CCANNNNNTGG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	735
XapI	RAATTY	1 cut(s)	802
XceI	RCATGY	2 cut(s)	97, 343
XhoI	CTCGAG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.