Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

19920555 .. 19924377

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATTTATGTCCATGCAAAAGGAATGATTGTTGATGATGAGTTTGTAATCATGGGTTCTGCAAATATTAACCAAAGATCAATGGACGGTTCACGGGACACAGAAATTGCTATGGGTGCTTACCAACCACATCATACATGGGCAGCTCTAAAAAGTCTTCATCCACATGGCCAGAACACCAACCTTGAGAAGGGGATATATAGAGATTTATGGGATCAATCGAAAGGAGGGGGGGAGAAGGCTCGAGAGAAATCACTGCTCCCGGAGGCGTCAAGCCACAAGATGGACGGGAAGATCTCATTCAATTCCTCTCTTCACTACGGTGCCACCACAATTTCAATTACTCAATTAGTGGCGGTAGAAGATGAAAGAACAGTCGCCAGGGGCGATGGATTGGCCATTGACGGCGGCAAGGAACTTTGTTGTTGCAACAAAATTAATGGACCTTACGTGGGCTCAGTAGGGTTTGGGAACGGGCTTGGGCCTAGGTCTAGGCTCACACCCATGTGGGCTCAAAGTTGGTCGTTATTAGTGCGATCGGAGATTGTGTATGGTTACCGAATGTCTCTTTGGGCTGAGCATCTCGATGGAATAGAGAAAACTTTTGAAGATCCTCAGAGTCTTGAATGCACCAAGCGTGTTTGTGAGATTGCCAAACAAAATTGGAAACACTTTATAGCTGAAGAGCACCGGGAGATGAAGGGACACTTGATGCAATACCCAGTTCAAATCGGAAAAGATGGAAAAGTGTCTTCAATACCTGGAGCTGAATCATTTCCTGATGTTGGTGGCAAAATTCTCGGGGCACCAACCAATCTTCCAGATGCTCTAACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

280

Amino Acids

30.7

Weight (kDa)

6.26

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	2 - 27	1.4e-06	Phospholipase D Active site motif
PLDc_2	PF13091	4 - 38	1.8e-06	PLD-like domain
PLD_C	PF12357	199 - 269	4.1e-29	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 805
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	2 cut(s)	356, 408
AclWI	GGATC	2 cut(s)	222, 605
AcoI	YGGCCR	2 cut(s)	169, 396
AcsI	RAATTY	1 cut(s)	795
AcuI	CTGAAG	1 cut(s)	702
AcyI	GRCGYC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	190, 283, 452, 785
AgsI	TTSAA	6 cut(s)	304, 339, 608, 626, 728, 756
AjnI	CCWGG	2 cut(s)	380, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AleI	CACNNNNGTG	2 cut(s)	321, 505
AluBI	AGCT	3 cut(s)	146, 680, 767
AluI	AGCT	3 cut(s)	146, 680, 767
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	222, 605
Ama87I	CYCGRG	2 cut(s)	243, 800
AoxI	GGCC	3 cut(s)	169, 396, 482
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	795
AseI	ATTAAT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	774
AspA2I	CCTAGG	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	443, 482
AsuC2I	CCSGG	2 cut(s)	263, 692
AvaI	CYCGRG	2 cut(s)	243, 800
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	808
BalI	TGGCCA	2 cut(s)	171, 398
BanI	GGYRCC	2 cut(s)	323, 805
BanII	GRGCYC	2 cut(s)	458, 514
BbsI	GAAGAC	2 cut(s)	149, 744
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	277, 383, 581, 734
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	2 cut(s)	382, 762
BcnI	CCSGG	2 cut(s)	263, 692
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	2 cut(s)	486, 492
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	2 cut(s)	144, 409
BlnI	CCTAGG	1 cut(s)	485
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	2 cut(s)	145, 410
Bme1390I	CCNGG	4 cut(s)	263, 382, 692, 762
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	2 cut(s)	243, 800
BmgT120I	GGNCC	2 cut(s)	443, 482
BmiI	GGNNCC	2 cut(s)	325, 807
BmrFI	CCNGG	4 cut(s)	263, 382, 692, 762
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	3 cut(s)	589, 702, 814
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	149, 744
BpmI	CTGGAG	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	263, 692
BsaAI	YACGTR	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	381, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 283, 452, 785
Bse1I	ACTGG	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	382, 762
BseDI	CCNNGG	2 cut(s)	381, 485
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	4 cut(s)	190, 283, 452, 785
BseMII	CTCAG	3 cut(s)	471, 567, 629
BseNI	ACTGG	1 cut(s)	722
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	3 cut(s)	171, 398, 484
BshNI	GGYRCC	2 cut(s)	323, 805
BsiEI	CGRYCG	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	2 cut(s)	243, 800
BsiSI	CCGG	2 cut(s)	263, 691
BslFI	GGGAC	2 cut(s)	110, 717
BslI	CCNNNNNNNGG	4 cut(s)	190, 283, 452, 785
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	2 cut(s)	110, 717
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	171, 398, 484
BsoBI	CYCGRG	2 cut(s)	243, 800
Bsp1286I	GDGCHC	4 cut(s)	458, 514, 690, 808
Bsp143I	GATC	5 cut(s)	77, 214, 294, 536, 610
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	2 cut(s)	356, 408
BspANI	GGCC	3 cut(s)	171, 398, 484
BspCNI	CTCAG	3 cut(s)	470, 568, 628
BspLI	GGNNCC	2 cut(s)	325, 807
BspPI	GGATC	2 cut(s)	222, 605
BspQI	GCTCTTC	1 cut(s)	678
BspT107I	GGYRCC	2 cut(s)	323, 805
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	381, 485
BssMI	GATC	5 cut(s)	77, 214, 294, 536, 610
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	382, 762
Bst4CI	ACNGT	3 cut(s)	89, 323, 376
Bst6I	CTCTTC	2 cut(s)	318, 678
BstACI	GRCGYC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	457, 576, 615
BstEII	GGTNACC	1 cut(s)	554
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	5 cut(s)	80, 217, 297, 539, 613
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	5 cut(s)	77, 214, 294, 536, 610
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	382, 762
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	4 cut(s)	261, 380, 690, 760
BstSLI	GKGCMC	1 cut(s)	808
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	149, 744
BstX2I	RGATCY	2 cut(s)	294, 610
BstYI	RGATCY	2 cut(s)	294, 610
BsuRI	GGCC	3 cut(s)	171, 398, 484
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	443, 482
CseI	GACGC	1 cut(s)	258
CviAII	CATG	5 cut(s)	14, 52, 138, 167, 505
DdeI	CTNAG	3 cut(s)	457, 576, 615
DpnI	GATC	5 cut(s)	79, 216, 296, 538, 612
DpnII	GATC	5 cut(s)	77, 214, 294, 536, 610
EaeI	YGGCCR	2 cut(s)	169, 396
Eam1104I	CTCTTC	2 cut(s)	318, 678
EarI	CTCTTC	2 cut(s)	318, 678
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	2 cut(s)	458, 514
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	2 cut(s)	243, 800
Eco91I	GGTNACC	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	380, 760
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	2 cut(s)	458, 514
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	5 cut(s)	17, 55, 141, 170, 508
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	2 cut(s)	110, 717
FatI	CATG	5 cut(s)	13, 51, 137, 166, 504
Fnu4HI	GCNGC	2 cut(s)	144, 409
FokI	GGATG	1 cut(s)	147
FriOI	GRGCYC	2 cut(s)	458, 514
Fsp4HI	GCNGC	2 cut(s)	144, 409
FspBI	CTAG	2 cut(s)	486, 492
GluI	GCNGC	2 cut(s)	144, 409
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	3 cut(s)	171, 398, 484
HapII	CCGG	2 cut(s)	263, 691
HgaI	GACGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	17, 55, 141, 170, 508
HinfI	GANTC	2 cut(s)	619, 770
HpaII	CCGG	2 cut(s)	263, 691
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	541, 618, 734
Hpy188III	TCNNGA	5 cut(s)	245, 584, 623, 779, 821
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	184, 232, 694
HpyCH4III	ACNGT	3 cut(s)	89, 323, 376
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	5 cut(s)	17, 62, 429, 630, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	457, 576, 615
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	17, 55, 141, 170, 508
Kzo9I	GATC	5 cut(s)	77, 214, 294, 536, 610
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	2 cut(s)	264, 764
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	3 cut(s)	589, 702, 814
MaeI	CTAG	2 cut(s)	486, 492
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	5 cut(s)	79, 216, 296, 538, 612
MboI	GATC	5 cut(s)	77, 214, 294, 536, 610
MboII	GAAGA	8 cut(s)	149, 304, 305, 374, 620, 695, 744, 809
MflI	RGATCY	2 cut(s)	294, 610
MhlI	GDGCHC	4 cut(s)	458, 514, 690, 808
MlsI	TGGCCA	2 cut(s)	171, 398
MluCI	AATT	8 cut(s)	105, 304, 333, 339, 347, 435, 661, 795
MluNI	TGGCCA	2 cut(s)	171, 398
MlyI	GAGTC	1 cut(s)	628
MnlI	CCTC	4 cut(s)	221, 259, 319, 624
Mox20I	TGGCCA	2 cut(s)	171, 398
MroXI	GAANNNNTTC	1 cut(s)	774
MscI	TGGCCA	2 cut(s)	171, 398
MseI	TTAA	3 cut(s)	69, 438, 838
MslI	CAYNNNNRTG	5 cut(s)	165, 321, 503, 505, 585
Msp20I	TGGCCA	2 cut(s)	171, 398
MspI	CCGG	2 cut(s)	263, 691
MspR9I	CCNGG	4 cut(s)	263, 382, 692, 762
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	2 cut(s)	382, 762
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	2 cut(s)	263, 692
NdeII	GATC	5 cut(s)	77, 214, 294, 536, 610
NlaIII	CATG	5 cut(s)	17, 55, 141, 170, 508
NlaIV	GGNNCC	2 cut(s)	325, 807
OliI	CACNNNNGTG	2 cut(s)	321, 505
PaeR7I	CTCGAG	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	145, 410
Ple19I	CGATCG	1 cut(s)	539
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Ppu21I	YACGTR	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	380, 760
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	2 cut(s)	380, 760
PspN4I	GGNNCC	2 cut(s)	325, 807
PspPI	GGNCC	2 cut(s)	443, 482
PsuI	RGATCY	2 cut(s)	294, 610
PvuI	CGATCG	1 cut(s)	539
RseI	CAYNNNNRTG	5 cut(s)	165, 321, 503, 505, 585
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	69, 438, 838
SatI	GCNGC	2 cut(s)	144, 409
Sau3AI	GATC	5 cut(s)	77, 214, 294, 536, 610
Sau96I	GGNCC	2 cut(s)	443, 482
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	4 cut(s)	263, 382, 692, 762
SduI	GDGCHC	4 cut(s)	458, 514, 690, 808
SetI	ASST	8 cut(s)	148, 186, 448, 453, 491, 682, 763, 769
SfaNI	GCATC	3 cut(s)	589, 702, 814
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	5 cut(s)	165, 321, 503, 505, 585
SmlI	CTYRAG	2 cut(s)	185, 243
SmoI	CTYRAG	2 cut(s)	185, 243
Sse9I	AATT	8 cut(s)	105, 304, 333, 339, 347, 435, 661, 795
SsiI	CCGC	2 cut(s)	356, 408
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	2 cut(s)	486, 492
StyD4I	CCNGG	4 cut(s)	261, 380, 690, 760
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	3 cut(s)	89, 323, 376
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	221, 244, 585
TasI	AATT	8 cut(s)	105, 304, 333, 339, 347, 435, 661, 795
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	3 cut(s)	69, 438, 838
Tru9I	TTAA	3 cut(s)	69, 438, 838
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	149, 381, 713
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	438
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XhoI	CTCGAG	1 cut(s)	243
XmaJI	CCTAGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	2 cut(s)	486, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.