Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

341959 .. 350563

Gene Structure 8605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTGGCCAGAAGGTGTTCCGACTGGTGCAGCAACACAAAGAATTCTATTTTGGCAGCACAAGACAATGCAAATGATGTATGAGACAATTTACAAGGCGTTAGAAGAAATGGGATTGGAGGGTGCATTCTGCCCCCAAGACTATTTAAACTTCTTTTGTCTTGGAAATCGTGAGGCTATAGATGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAATCAAAGAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTATGTAATAGTGGAGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTTGGAGAGAATAACATGTCCGATTATGCATCTTTGCTTATGTGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

5.1

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	89 - 114	4.3e-06	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
Alw26I	GTCTC	2 cut(s)	77, 351
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	2 cut(s)	5, 378
ApeKI	GCWGC	4 cut(s)	29, 55, 215, 218
ApoI	RAATTY	1 cut(s)	42
Asp700I	GAANNNNTTC	2 cut(s)	15, 412
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	378
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	7
BbvI	GCAGC	4 cut(s)	41, 67, 202, 230
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	77, 351
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	2 cut(s)	177, 216
BfoI	RGCGCY	1 cut(s)	340
BisI	GCNGC	4 cut(s)	30, 56, 216, 219
BlsI	GCNGC	4 cut(s)	31, 57, 217, 220
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	379
BmsI	GCATC	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	41, 67, 202, 230
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	7, 380
BslFI	GGGAC	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	77, 351
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	7, 380
BspANI	GGCC	2 cut(s)	7, 380
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	77, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	442
BstSFI	CTRYAG	2 cut(s)	177, 216
BstV1I	GCAGC	4 cut(s)	41, 67, 202, 230
BsuRI	GGCC	2 cut(s)	7, 380
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	378
CviAII	CATG	2 cut(s)	399, 439
CviJI	RGCY	4 cut(s)	7, 176, 380, 471
CviKI_1	RGCY	4 cut(s)	7, 176, 380, 471
DraI	TTTAAA	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	5
Eco47III	AGCGCT	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	2 cut(s)	402, 442
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	2 cut(s)	398, 438
Fnu4HI	GCNGC	4 cut(s)	30, 56, 216, 219
Fsp4HI	GCNGC	4 cut(s)	30, 56, 216, 219
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	4 cut(s)	30, 56, 216, 219
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	7, 380
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	402, 442
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	21, 445
Hpy188III	TCNNGA	2 cut(s)	170, 204
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	5, 341
HpyCH4V	TGCA	6 cut(s)	29, 70, 125, 218, 323, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	402, 442
HspAI	GCGC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	9, 21, 189, 218, 225, 238
Lsp1109I	GCAGC	4 cut(s)	41, 67, 202, 230
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	1 cut(s)	417
MboII	GAAGA	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	2 cut(s)	42, 87
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	112, 166, 399
Mox20I	TGGCCA	1 cut(s)	7
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	2 cut(s)	15, 412
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	146, 240
Msp20I	TGGCCA	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	402, 442
NlaIV	GGNNCC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	2 cut(s)	15, 412
PkrI	GCNGC	4 cut(s)	31, 57, 217, 220
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	146, 240
SatI	GCNGC	4 cut(s)	30, 56, 216, 219
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	326
SetI	ASST	3 cut(s)	16, 286, 391
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	2 cut(s)	177, 216
Sse9I	AATT	2 cut(s)	42, 87
SspMI	CTAG	1 cut(s)	417
TaqI	TCGA	2 cut(s)	278, 294
TasI	AATT	2 cut(s)	42, 87
Tru1I	TTAA	2 cut(s)	146, 240
Tru9I	TTAA	2 cut(s)	146, 240
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	4 cut(s)	29, 55, 215, 218
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	15, 412
XspI	CTAG	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.