Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

790796 .. 791972

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATAGTGGACGATGAATATGTCATAATTGGATCTGCAAATATCGATCAGCGATCCATGGAAGGTACCCGAGATACTGAAATAGCAATGGGAGCATATCAGCCTCATCATACTTGGGCAAGAAAGCTCTCACGTCCACGGGGAAAGGTATATGGATATAGAATGTCACTGTGGCAAGAGCACATAGGACTTGTTGAAGAATGTTTCAAGCAGCCAGAGAGTCTTGACTGTGTCCGAAGGGTAAGGACTCTGAGTGAGCAGAACTGGAGCCAATACGTAGCTGATGAAGTGACGGACATGAACGGTCGTCACCTCCTGAGATATCCTATTGAAGTTGATCAATTCGGAAATGTGATGGCTCTTTCCGGGTGTACAGACTTTCCAGACGTCAATGGATACATATTGGGGAGTCCCGGCGACATAAGGAACATTCTAGGGATCAGAAGGTTTGTGCCGTGGGAATTACCATTCCCATGGAAGAAGAGAGAAAATGTCACCACCTGCTCTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

172

Amino Acids

19.81

Weight (kDa)

5.81

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLD_C	PF12357	66 - 137	1.5e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	509
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	40, 48, 446
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	67, 373
AgsI	TTSAA	3 cut(s)	197, 208, 332
AjiI	CACGTC	1 cut(s)	134
AluBI	AGCT	2 cut(s)	127, 281
AluI	AGCT	2 cut(s)	127, 281
Alw21I	GWGCWC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	40, 48, 446
Ama87I	CYCGRG	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	211
Asp718I	GGTACC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	367, 414
AsuHPI	GGTGA	2 cut(s)	302, 487
AvaI	CYCGRG	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	439
BciVI	GTATCC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	367, 414
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	367, 414
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	67, 269
BmrFI	CCNGG	2 cut(s)	367, 414
BpmI	CTGGAG	1 cut(s)	286
BpuMI	CCSGG	2 cut(s)	367, 414
Bsa29I	ATCGAT	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	57, 137, 455, 473
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	4 cut(s)	57, 137, 455, 473
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	242, 308
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	366, 414
BslFI	GGGAC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	5 cut(s)	32, 46, 53, 337, 438
Bsp19I	CCATGG	2 cut(s)	57, 473
BspCNI	CTCAG	2 cut(s)	243, 309
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	67, 269
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	40, 48, 446
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	57, 137, 455, 473
BssMI	GATC	5 cut(s)	32, 46, 53, 337, 438
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	57, 473
Bst4CI	ACNGT	3 cut(s)	171, 230, 305
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	251, 317
BstDSI	CCRYGG	4 cut(s)	57, 137, 455, 473
BstKTI	GATC	5 cut(s)	35, 49, 56, 340, 441
BstMBI	GATC	5 cut(s)	32, 46, 53, 337, 438
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	365, 412
BstSNI	TACGTA	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	389
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	4 cut(s)	57, 137, 455, 473
BtrI	CACGTC	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	66, 372
CviAII	CATG	4 cut(s)	58, 298, 474, 511
CviJI	RGCY	6 cut(s)	103, 127, 214, 270, 281, 359
CviKI_1	RGCY	6 cut(s)	103, 127, 214, 270, 281, 359
CviQI	GTAC	2 cut(s)	66, 372
DdeI	CTNAG	2 cut(s)	251, 317
DpnI	GATC	5 cut(s)	34, 48, 55, 339, 440
DpnII	GATC	5 cut(s)	32, 46, 53, 337, 438
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco105I	TACGTA	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	57, 473
Eco32I	GATATC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	57, 473
ErhI	CCWWGG	2 cut(s)	57, 473
FaeI	CATG	4 cut(s)	61, 301, 477, 514
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	4 cut(s)	57, 297, 473, 510
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	286
HapII	CCGG	2 cut(s)	366, 414
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	61, 301, 477, 514
HinfI	GANTC	3 cut(s)	220, 247, 409
HpaII	CCGG	2 cut(s)	366, 414
HphI	GGTGA	2 cut(s)	302, 487
Hpy166II	GTNNAC	3 cut(s)	10, 137, 372
Hpy188I	TCNGA	4 cut(s)	236, 252, 347, 443
Hpy188III	TCNNGA	3 cut(s)	224, 316, 383
Hpy8I	GTNNAC	3 cut(s)	10, 137, 372
HpyAV	CCTTC	3 cut(s)	56, 231, 438
HpyCH4III	ACNGT	3 cut(s)	171, 230, 305
HpyCH4IV	ACGT	3 cut(s)	133, 276, 387
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	251, 317
HpySE526I	ACGT	3 cut(s)	133, 276, 387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	61, 301, 477, 514
KpnI	GGTACC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	32, 46, 53, 337, 438
LmnI	GCTCC	2 cut(s)	92, 267
LpnPI	CCDG	6 cut(s)	228, 250, 329, 379, 396, 427
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	3 cut(s)	133, 276, 387
MaeIII	GTNAC	4 cut(s)	165, 289, 308, 493
MalI	GATC	5 cut(s)	34, 48, 55, 339, 440
MboI	GATC	5 cut(s)	32, 46, 53, 337, 438
MboII	GAAGA	3 cut(s)	209, 490, 493
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	27, 341, 461
MlyI	GAGTC	3 cut(s)	229, 241, 418
MnlI	CCTC	2 cut(s)	114, 323
MslI	CAYNNNNRTG	1 cut(s)	472
MspI	CCGG	2 cut(s)	366, 414
MspR9I	CCNGG	2 cut(s)	367, 414
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	367, 414
NcoI	CCATGG	2 cut(s)	57, 473
NdeII	GATC	5 cut(s)	32, 46, 53, 337, 438
NlaIII	CATG	4 cut(s)	61, 301, 477, 514
NlaIV	GGNNCC	2 cut(s)	67, 269
NmuCI	GTSAC	4 cut(s)	165, 289, 308, 493
PaqCI	CACCTGC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	3 cut(s)	228, 241, 417
PpsI	GAGTC	3 cut(s)	228, 241, 417
Ppu21I	YACGTR	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	67, 269
PsuI	RGATCY	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	2 cut(s)	67, 373
RsaNI	GTAC	2 cut(s)	66, 372
RseI	CAYNNNNRTG	1 cut(s)	472
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	5 cut(s)	32, 46, 53, 337, 438
SchI	GAGTC	3 cut(s)	229, 241, 418
ScrFI	CCNGG	2 cut(s)	367, 414
SduI	GDGCHC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	472
SnaBI	TACGTA	1 cut(s)	277
Sse9I	AATT	3 cut(s)	27, 341, 461
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	365, 412
StyI	CCWWGG	2 cut(s)	57, 473
TaaI	ACNGT	3 cut(s)	171, 230, 305
TaiI	ACGT	3 cut(s)	136, 279, 390
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	27, 341, 461
TatI	WGTACW	1 cut(s)	371
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	4 cut(s)	165, 289, 308, 493
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	4 cut(s)	165, 289, 308, 493
TspDTI	ATGAA	3 cut(s)	30, 300, 314
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.