Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009922.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

23727 .. 33372

Gene Structure 9646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009922.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

atggcggaaccgacgccgtcggagcagatagtctatctgcacggcgacctggaccttcaaatcatcgaggcgcgctacctgcccaacatggacatcgtctccgagcgcctccgccgctgcttcaccgcctgcgacaccgtcaactgcaccaactcccgctccgacaatcccgatgccggccacggagccgaggaccgcaagaaggtccaccaccgcaaaatcatcaccagcgactcttacgtcagcgtcgttgtgccccaggccacggtggcgcgtacgcgcgtcatcaagaactcgcagaatcctcagtggaaagagaccttttccatcccgctcgcgcatcccgcggctaaggttgagtttcaggtcaaagataacgacctcttcggcgctgagcttatcggcaccgcctcgatccccgccgcagaagtcgcctccggaaaatccatttccggctggtatgagattatcggacccaccggaaagcctccgaagcctgattgcgctattaaggtcgagttgaagttcacgcccttcgagataaacccggtctacaggcacggcatcgccggcgatccagaacggaagggagtccccaagacctacttccctatgaggaagggaagtcacgtgaggctgtaccaggacgcgcacgtgccggaggggatgctgccgcagattgaattggacggaaggaaggtttataagcctgagaattgctgggaggacatttgctatgcgatttcggaggctcaccatatgatctatgtggtgggatggtctgtgtttcacaaagtgaggctggttagggagccgagccggaagttgccacgcggcggcgaattgacgctcggagatttgctcaagtataagtcggaagaaggcgtacgggtgttgttgctggtctgggatgataagacctcccacgacaagttcttcttcaaatcggcaggaatgatgcaaactcatgatgaagaaacccggaagtttttcaagcattcgtctgtcacttgtgttctggcccctcgctatggcagtagtaagcttagcattatgaaacaacaggttgttggaaccctctttacacaccatcaaaaatgtgttattgtggacacacaagcatctggtaataaccgcaagataactacatttttaggaggtcttgatctctgtgatggtcgttatgacacacctgagcacagattgtttcgggatctcgacactgtgtttaaagaagattttcatcaacctacgtttcctgctgggaccaaggctccaaggcaaccatggcatgacttgcactgtagaattgacgggcctgctgcatatgatgttcttataaactttgagcaacggtggaggagagcaacacagtggagggagtttggactacgtaaaaaggtttcgcattggcatgatgatgctttaattaagatagaccgtatttcatggatacttagtcctaagatgtctcattcaaaggagtcaaaggatgttacaattgttcccgaagatgacccagctttatgggttcagggagaagatgatcccgaagattggcatgttcagattttcaggtctattgactcgggatcactgaaaggatttcccaaagatgtcattcatgctcagtcaaagaaccttatttgctcaaaggatctagtaatagataaaagcatccagaaagcatacatcaatgcaatcagatctgcccaacatttcatatatattgaaaatcagtattttcttggttcatcatatgcatggccagattataaaaatgcaggagctgacaatcttatcccaatggagttggcactaaagattgccagcaaaattagagctcatgagagatttgcagtgtatatagttctacctatgtggcctgaaggtgatccgaaaactggtgcaatgcaagaaattctctactggcagagccaaacaatgcaaatgatgtatggtgttgttgcacgggaattgagggccctgcagcttcaggacttacatcctcaagatttcctcaatttctattgccttggtaatcgggaaaaattttctgaggaaacatcagacaacaatggtgctacgagccaaacaatgcaaatgatgtatggtgttgttgcacgggaattgagggccctgcagcttcaggacttacatcctcaagatttcctcaatttctattgccttggtaatcgggaaaaattttctgaggaaacatcagacaacaatggtgctacgatctccgatgcatacaagtaccagcgatttatgatttatgttcatgccaagggtatgatagtagatgacgagtacgttatagtgggatctgccaatatcaaccaaagatcattggccggtacgaaagacactgagatagcaatgggtgcttatcaaccccatcacagttgggctgagaagaagagacatccatgtggtcagatatatgggtatcgaatgtcgctctgggctgagcatcttggtaagtcggacccatgcttcaaagaggcagagagtttggaatgtgtgaggaatgtgaatggcattgccaaagaaaactggaggagatacacatcgccggatttcacagaccaactgcagggtcaccttctcaggtatccgttgcaggtagatggtgatggtaacgtgggacccctgccaggatatgaaaatttccctgatgttggtggcaaaggttcttccacctttaccccctcaaaatggcggattctcctcgcagaaggtattcacgatccccttctccatggagagctcagtctcggtccagatccaggtccaggtctatgtccaggcctaggtcaagatcaagatcctggtctaggccgaggcacaggtctagaagtcgtggcaggttggtcaagatccagaagtcgtggaagggatgctgttgtaaatcctggaaatacactctatgtgactggcctatctcaaagggtctctgaaaaggacgttgaaaggcacttttcaaaggagggaaaggtagcttcatgttttcttgttgttgaacctcgttcgcgaatttcccgtggttttgccttcgttacaatggattctaatgaagatgcagaacggtgcattaaacatctcaaccagtcagttctggaagggcgatacataactgtggaaaggattgcgtcagctatgttggcagcaatcaaagatgaggagtttatccctctcaactttagtgaaacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

1073

Amino Acids

121.47

Weight (kDa)

6.53

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	705, 1340, 1776
AasI	GACNNNNNNGTC	1 cut(s)	239
Acc36I	ACCTGC	3 cut(s)	87, 2617, 2861
AccB1I	GGYRCC	1 cut(s)	404
AccBSI	CCGCTC	2 cut(s)	159, 334
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
AccIII	TCCGGA	1 cut(s)	437
AcoI	YGGCCR	3 cut(s)	178, 1766, 2355
AcsI	RAATTY	5 cut(s)	1920, 2051, 2204, 2671, 3039
AcuI	CTGAAG	3 cut(s)	1908, 1979, 2132
AcvI	CACGTG	2 cut(s)	631, 655
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	6 cut(s)	277, 641, 888, 2261, 2315, 2362
AjnI	CCWGG	9 cut(s)	48, 258, 642, 2659, 2791, 2797, 2809, 2833, 2917
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
Alw21I	GWGCWC	3 cut(s)	1200, 1846, 2775
Alw26I	GTCTC	6 cut(s)	103, 311, 1476, 2419, 2783, 2962
AlwNI	CAGNNNCTG	1 cut(s)	1790
Ama87I	CYCGRG	1 cut(s)	1588
Aor13HI	TCCGGA	1 cut(s)	437
ApaI	GGGCCC	2 cut(s)	1987, 2140
ApeKI	GCWGC	6 cut(s)	117, 670, 1322, 1990, 2143, 3170
ApoI	RAATTY	5 cut(s)	1920, 2051, 2204, 2671, 3039
Asp700I	GAANNNNTTC	3 cut(s)	989, 1239, 2745
AspA2I	CCTAGG	1 cut(s)	2815
AspLEI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
AsuC2I	CCSGG	2 cut(s)	548, 982
AsuHPI	GGTGA	6 cut(s)	115, 217, 746, 1904, 2597, 2648
AvaI	CYCGRG	1 cut(s)	1588
AvaII	GGWCC	9 cut(s)	52, 193, 205, 473, 1266, 2491, 2651, 2783, 2795
AvrII	CCTAGG	1 cut(s)	2815
BaeGI	GKGCMC	3 cut(s)	258, 1987, 2140
BalI	TGGCCA	1 cut(s)	1768
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	4 cut(s)	1846, 1987, 2140, 2775
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BbrPI	CACGTG	2 cut(s)	631, 655
Bbv12I	GWGCWC	3 cut(s)	1200, 1846, 2775
BbvI	GCAGC	6 cut(s)	104, 657, 1309, 2002, 2155, 3182
BccI	CCATC	7 cut(s)	335, 771, 1098, 1169, 2409, 2627, 2633
BceAI	ACGGC	2 cut(s)	58, 577
BciT130I	CCWGG	9 cut(s)	50, 260, 644, 2661, 2793, 2799, 2811, 2835, 2919
BciVI	GTATCC	2 cut(s)	1446, 2628
BcnI	CCSGG	2 cut(s)	548, 982
BcoDI	GTCTC	6 cut(s)	103, 311, 1476, 2419, 2783, 2962
BfaI	CTAG	4 cut(s)	1661, 2816, 2840, 2858
BfmI	CTRYAG	5 cut(s)	553, 1303, 1988, 2141, 2597
BfoI	RGCGCY	2 cut(s)	109, 393
BfuAI	ACCTGC	3 cut(s)	87, 2617, 2861
BfuI	GTATCC	2 cut(s)	1446, 2628
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	1706
BlnI	CCTAGG	1 cut(s)	2815
BlpI	GCTNAGC	3 cut(s)	393, 1046, 2472
Bme18I	GGWCC	9 cut(s)	52, 193, 205, 473, 1266, 2491, 2651, 2783, 2795
BmeT110I	CYCGRG	1 cut(s)	1588
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
BpmI	CTGGAG	1 cut(s)	2581
Bpu10I	CCTNAGC	2 cut(s)	351, 1194
Bpu1102I	GCTNAGC	3 cut(s)	393, 1046, 2472
BpuEI	CTTGAG	3 cut(s)	848, 1995, 2148
BpuMI	CCSGG	2 cut(s)	548, 982
BsaAI	YACGTR	3 cut(s)	631, 655, 1394
BsaBI	GATNNNNATC	3 cut(s)	1242, 2572, 2829
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	2 cut(s)	311, 2962
BsaWI	WCCGGW	2 cut(s)	437, 479
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 143, 173, 1258, 1288
Bse118I	RCCGGY	3 cut(s)	176, 569, 2357
Bse1I	ACTGG	5 cut(s)	1909, 1934, 2564, 2944, 3112
Bse3DI	GCAATG	3 cut(s)	1917, 2388, 2544
Bse8I	GATNNNNATC	3 cut(s)	1242, 2572, 2829
BseAI	TCCGGA	1 cut(s)	437
BseBI	CCWGG	9 cut(s)	50, 260, 644, 2661, 2793, 2799, 2811, 2835, 2919
BseJI	GATNNNNATC	3 cut(s)	1242, 2572, 2829
BseMI	GCAATG	3 cut(s)	1917, 2388, 2544
BseNI	ACTGG	5 cut(s)	1909, 1934, 2564, 2944, 3112
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	4 cut(s)	1375, 2578, 2723, 3200
BseSI	GKGCMC	3 cut(s)	258, 1987, 2140
BseXI	GCAGC	6 cut(s)	104, 657, 1309, 2002, 2155, 3182
BseYI	CCCAGC	3 cut(s)	720, 1262, 1519
BsgI	GTGCAG	2 cut(s)	23, 130
Bsh1236I	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	3 cut(s)	1200, 1846, 2775
BsiHKCI	CYCGRG	1 cut(s)	1588
BsiWI	CGTACG	2 cut(s)	275, 886
BslFI	GGGAC	3 cut(s)	578, 1279, 2664
BsmAI	GTCTC	6 cut(s)	103, 311, 1476, 2419, 2783, 2962
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	3 cut(s)	578, 1279, 2664
BsmI	GAATGC	1 cut(s)	997
Bso31I	GGTCTC	2 cut(s)	311, 2962
BsoBI	CYCGRG	1 cut(s)	1588
Bsp120I	GGGCCC	2 cut(s)	1983, 2136
Bsp1286I	GDGCHC	6 cut(s)	258, 1200, 1846, 1987, 2140, 2775
Bsp13I	TCCGGA	1 cut(s)	437
Bsp1720I	GCTNAGC	3 cut(s)	393, 1046, 2472
Bsp19I	CCATGG	2 cut(s)	1286, 2764
Bsp68I	TCGCGA	1 cut(s)	3037
BspEI	TCCGGA	1 cut(s)	437
BspFNI	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
BspHI	TCATGA	2 cut(s)	967, 1846
BspMAI	CTGCAG	3 cut(s)	1992, 2145, 2601
BspMI	ACCTGC	3 cut(s)	87, 2617, 2861
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	311, 2962
BsrBI	CCGCTC	2 cut(s)	159, 334
BsrDI	GCAATG	3 cut(s)	1917, 2388, 2544
BsrFI	RCCGGY	3 cut(s)	176, 569, 2357
BsrI	ACTGG	5 cut(s)	1909, 1934, 2564, 2944, 3112
BssAI	RCCGGY	3 cut(s)	176, 569, 2357
BssHII	GCGCGC	1 cut(s)	71
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	8 cut(s)	1269, 1277, 1286, 2035, 2188, 2289, 2764, 2815
Bst2UI	CCWGG	9 cut(s)	50, 260, 644, 2661, 2793, 2799, 2811, 2835, 2919
Bst6I	CTCTTC	2 cut(s)	389, 2417
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	2 cut(s)	1297, 2387
BstBAI	YACGTR	3 cut(s)	631, 655, 1394
BstC8I	GCNNGC	7 cut(s)	73, 130, 178, 336, 571, 1320, 1831
BstDSI	CCRYGG	6 cut(s)	181, 264, 345, 1286, 2764, 3046
BstEII	GGTNACC	1 cut(s)	2603
BstENI	CCTNNNNNAGG	1 cut(s)	2838
BstFNI	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
BstH2I	RGCGCY	2 cut(s)	109, 393
BstHHI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
BstMAI	GTCTC	6 cut(s)	103, 311, 1476, 2419, 2783, 2962
BstNI	CCWGG	9 cut(s)	50, 260, 644, 2661, 2793, 2799, 2811, 2835, 2919
BstNSI	RCATGY	1 cut(s)	1565
BstPI	GGTNACC	1 cut(s)	2603
BstSFI	CTRYAG	5 cut(s)	553, 1303, 1988, 2141, 2597
BstSLI	GKGCMC	3 cut(s)	258, 1987, 2140
BstSNI	TACGTA	1 cut(s)	1394
BstUI	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
BstV1I	GCAGC	6 cut(s)	104, 657, 1309, 2002, 2155, 3182
BstX2I	RGATCY	7 cut(s)	1213, 1657, 1706, 2327, 2788, 2830, 2882
BstXI	CCANNNNNNTGG	1 cut(s)	1527
BstYI	RGATCY	7 cut(s)	1213, 1657, 1706, 2327, 2788, 2830, 2882
BsuI	GTATCC	2 cut(s)	1446, 2628
BtgI	CCRYGG	6 cut(s)	181, 264, 345, 1286, 2764, 3046
BtgZI	GCGATG	2 cut(s)	550, 2559
BtsI	GCAGTG	1 cut(s)	1866
BtsIMutI	CAGTG	7 cut(s)	314, 1221, 1300, 1379, 1595, 1866, 2370
BtuMI	TCGCGA	1 cut(s)	3037
BveI	ACCTGC	3 cut(s)	87, 2617, 2861
Cac8I	GCNNGC	7 cut(s)	73, 130, 178, 336, 571, 1320, 1831
CaiI	CAGNNNCTG	1 cut(s)	1790
CciI	TCATGA	2 cut(s)	967, 1846
CfoI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
Cfr10I	RCCGGY	3 cut(s)	176, 569, 2357
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	6 cut(s)	22, 235, 271, 656, 856, 3144
Csp6I	GTAC	6 cut(s)	276, 640, 887, 2260, 2314, 2361
CviQI	GTAC	6 cut(s)	276, 640, 887, 2260, 2314, 2361
DraI	TTTAAA	1 cut(s)	1231
DraIII	CACNNNGTG	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	3 cut(s)	178, 1766, 2355
Eam1104I	CTCTTC	2 cut(s)	389, 2417
EarI	CTCTTC	2 cut(s)	389, 2417
EciI	GGCGGA	3 cut(s)	20, 101, 2740
Ecl136II	GAGCTC	2 cut(s)	1844, 2773
Eco105I	TACGTA	1 cut(s)	1394
Eco130I	CCWWGG	8 cut(s)	1269, 1277, 1286, 2035, 2188, 2289, 2764, 2815
Eco147I	AGGCCT	1 cut(s)	2814
Eco24I	GRGCYC	4 cut(s)	1846, 1987, 2140, 2775
Eco31I	GGTCTC	2 cut(s)	311, 2962
Eco47I	GGWCC	9 cut(s)	52, 193, 205, 473, 1266, 2491, 2651, 2783, 2795
Eco53kI	GAGCTC	2 cut(s)	1844, 2773
Eco57I	CTGAAG	3 cut(s)	1908, 1979, 2132
Eco72I	CACGTG	2 cut(s)	631, 655
Eco88I	CYCGRG	1 cut(s)	1588
Eco91I	GGTNACC	1 cut(s)	2603
EcoICRI	GAGCTC	2 cut(s)	1844, 2773
EcoNI	CCTNNNNNAGG	1 cut(s)	2838
EcoO109I	RGGNCCY	5 cut(s)	1983, 1984, 2136, 2137, 2651
EcoO65I	GGTNACC	1 cut(s)	2603
EcoRII	CCWGG	9 cut(s)	48, 258, 642, 2659, 2791, 2797, 2809, 2833, 2917
EcoT14I	CCWWGG	8 cut(s)	1269, 1277, 1286, 2035, 2188, 2289, 2764, 2815
EcoT22I	ATGCAT	2 cut(s)	1765, 2254
EcoT38I	GRGCYC	4 cut(s)	1846, 1987, 2140, 2775
ErhI	CCWWGG	8 cut(s)	1269, 1277, 1286, 2035, 2188, 2289, 2764, 2815
Esp3I	CGTCTC	1 cut(s)	103
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 923, 955
FaqI	GGGAC	3 cut(s)	578, 1279, 2664
FauI	CCCGC	4 cut(s)	164, 339, 352, 427
FauNDI	CATATG	3 cut(s)	759, 1327, 1759
FblI	GTMKAC	1 cut(s)	552
FriOI	GRGCYC	4 cut(s)	1846, 1987, 2140, 2775
FspBI	CTAG	4 cut(s)	1661, 2816, 2840, 2858
GlaI	GCGC	9 cut(s)	72, 74, 107, 273, 281, 339, 391, 505, 651
GsaI	CCCAGC	3 cut(s)	724, 1266, 1523
GsuI	CTGGAG	1 cut(s)	2581
HaeII	RGCGCY	2 cut(s)	109, 393
HgaI	GACGC	6 cut(s)	22, 235, 271, 656, 856, 3144
HhaI	GCGC	9 cut(s)	73, 75, 108, 274, 282, 340, 392, 506, 652
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
HinP1I	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	7 cut(s)	233, 301, 591, 1484, 1586, 2728, 3071
HphI	GGTGA	6 cut(s)	115, 217, 746, 1904, 2597, 2648
Hpy166II	GTNNAC	5 cut(s)	142, 208, 528, 553, 1111
Hpy8I	GTNNAC	5 cut(s)	142, 208, 528, 553, 1111
Hpy99I	CGWCG	3 cut(s)	16, 22, 251
HpyCH4IV	ACGT	8 cut(s)	240, 630, 654, 1253, 1393, 2316, 2646, 2970
HpySE526I	ACGT	8 cut(s)	240, 630, 654, 1253, 1393, 2316, 2646, 2970
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	9 cut(s)	71, 73, 106, 272, 280, 338, 390, 504, 650
KflI	GGGWCCC	1 cut(s)	2651
Kpn2I	TCCGGA	1 cut(s)	437
KroI	GCCGGC	2 cut(s)	176, 569
KroNI	GCCGGC	2 cut(s)	178, 571
KspI	CCGCGG	1 cut(s)	348
LmnI	GCTCC	6 cut(s)	22, 164, 185, 811, 1279, 1787
Lsp1109I	GCAGC	6 cut(s)	104, 657, 1309, 2002, 2155, 3182
MaeI	CTAG	4 cut(s)	1661, 2816, 2840, 2858
MaeII	ACGT	8 cut(s)	240, 630, 654, 1253, 1393, 2316, 2646, 2970
MaeIII	GTNAC	7 cut(s)	626, 1006, 1495, 2603, 2642, 2935, 3061
MbiI	CCGCTC	2 cut(s)	159, 334
MfeI	CAATTG	1 cut(s)	1500
MflI	RGATCY	7 cut(s)	1213, 1657, 1706, 2327, 2788, 2830, 2882
MhlI	GDGCHC	6 cut(s)	258, 1200, 1846, 1987, 2140, 2775
MlsI	TGGCCA	1 cut(s)	1768
MluNI	TGGCCA	1 cut(s)	1768
MlyI	GAGTC	4 cut(s)	227, 600, 1493, 1580
MmeI	TCCRAC	4 cut(s)	186, 855, 1051, 2469
Mox20I	TGGCCA	1 cut(s)	1768
Mph1103I	ATGCAT	2 cut(s)	1765, 2254
MreI	CGCCGGCG	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	437
MroNI	GCCGGC	2 cut(s)	176, 569
MroXI	GAANNNNTTC	3 cut(s)	989, 1239, 2745
MscI	TGGCCA	1 cut(s)	1768
MseI	TTAA	5 cut(s)	510, 1230, 1427, 1431, 3099
MslI	CAYNNNNRTG	5 cut(s)	1413, 1419, 1762, 2433, 3140
Msp20I	TGGCCA	1 cut(s)	1768
MspA1I	CMGCKG	2 cut(s)	117, 347
MunI	CAATTG	1 cut(s)	1500
Mva1269I	GAATGC	1 cut(s)	997
MvaI	CCWGG	9 cut(s)	50, 260, 644, 2661, 2793, 2799, 2811, 2835, 2919
MvnI	CGCG	9 cut(s)	73, 274, 280, 282, 338, 347, 650, 834, 3037
NaeI	GCCGGC	2 cut(s)	178, 571
NciI	CCSGG	2 cut(s)	548, 982
NcoI	CCATGG	2 cut(s)	1286, 2764
NdeI	CATATG	3 cut(s)	759, 1327, 1759
NgoMIV	GCCGGC	2 cut(s)	176, 569
NmeAIII	GCCGAG	3 cut(s)	214, 840, 2870
NmuCI	GTSAC	4 cut(s)	626, 1006, 2603, 2935
NruI	TCGCGA	1 cut(s)	3037
NsiI	ATGCAT	2 cut(s)	1765, 2254
NspI	RCATGY	1 cut(s)	1565
PacI	TTAATTAA	1 cut(s)	1431
PagI	TCATGA	2 cut(s)	967, 1846
PauI	GCGCGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	2814
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	997
PdiI	GCCGGC	2 cut(s)	178, 571
PdmI	GAANNNNTTC	3 cut(s)	989, 1239, 2745
PfeI	GAWTC	3 cut(s)	301, 2728, 3071
Pfl23II	CGTACG	2 cut(s)	275, 886
PflFI	GACNNNGTC	3 cut(s)	16, 95, 137
PfoI	TCCNGGA	1 cut(s)	2917
PleI	GAGTC	4 cut(s)	227, 599, 1492, 1580
PmaCI	CACGTG	2 cut(s)	631, 655
PmlI	CACGTG	2 cut(s)	631, 655
PpsI	GAGTC	4 cut(s)	227, 599, 1492, 1580
Ppu21I	YACGTR	3 cut(s)	631, 655, 1394
PpuMI	RGGWCCY	1 cut(s)	2651
PsiI	TTATAA	3 cut(s)	705, 1340, 1776
Psp124BI	GAGCTC	2 cut(s)	1846, 2775
Psp5II	RGGWCCY	1 cut(s)	2651
Psp6I	CCWGG	9 cut(s)	48, 258, 642, 2659, 2791, 2797, 2809, 2833, 2917
PspCI	CACGTG	2 cut(s)	631, 655
PspEI	GGTNACC	1 cut(s)	2603
PspFI	CCCAGC	3 cut(s)	720, 1262, 1519
PspGI	CCWGG	9 cut(s)	48, 258, 642, 2659, 2791, 2797, 2809, 2833, 2917
PspLI	CGTACG	2 cut(s)	275, 886
PspOMI	GGGCCC	2 cut(s)	1983, 2136
PspPPI	RGGWCCY	1 cut(s)	2651
PsrI	GAACNNNNNNTAC	2 cut(s)	1066, 1098
PstI	CTGCAG	3 cut(s)	1992, 2145, 2601
PstNI	CAGNNNCTG	1 cut(s)	1790
PsuI	RGATCY	7 cut(s)	1213, 1657, 1706, 2327, 2788, 2830, 2882
PsyI	GACNNNGTC	3 cut(s)	16, 95, 137
PteI	GCGCGC	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	3037
RsaI	GTAC	6 cut(s)	277, 641, 888, 2261, 2315, 2362
RsaNI	GTAC	6 cut(s)	276, 640, 887, 2260, 2314, 2361
RseI	CAYNNNNRTG	5 cut(s)	1413, 1419, 1762, 2433, 3140
SacI	GAGCTC	2 cut(s)	1846, 2775
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	510, 1230, 1427, 1431, 3099
SchI	GAGTC	4 cut(s)	227, 600, 1493, 1580
SduI	GDGCHC	6 cut(s)	258, 1200, 1846, 1987, 2140, 2775
SfcI	CTRYAG	5 cut(s)	553, 1303, 1988, 2141, 2597
Sfr303I	CCGCGG	1 cut(s)	348
SgrAI	CRCCGGYG	1 cut(s)	569
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	9 cut(s)	52, 193, 205, 473, 1266, 2491, 2651, 2783, 2795
SmiMI	CAYNNNNRTG	5 cut(s)	1413, 1419, 1762, 2433, 3140
SmlI	CTYRAG	3 cut(s)	863, 2010, 2163
SmoI	CTYRAG	3 cut(s)	863, 2010, 2163
SnaBI	TACGTA	1 cut(s)	1394
SseBI	AGGCCT	1 cut(s)	2814
SspMI	CTAG	4 cut(s)	1661, 2816, 2840, 2858
SstI	GAGCTC	2 cut(s)	1846, 2775
StuI	AGGCCT	1 cut(s)	2814
StyI	CCWWGG	8 cut(s)	1269, 1277, 1286, 2035, 2188, 2289, 2764, 2815
TaiI	ACGT	8 cut(s)	243, 633, 657, 1256, 1396, 2319, 2649, 2973
TaqI	TCGA	6 cut(s)	66, 413, 516, 537, 1218, 2455
TaqII	GACCGA	1 cut(s)	2771
TauI	GCSGC	6 cut(s)	117, 350, 425, 676, 837, 840
TfiI	GAWTC	3 cut(s)	301, 2728, 3071
Tru1I	TTAA	5 cut(s)	510, 1230, 1427, 1431, 3099
Tru9I	TTAA	5 cut(s)	510, 1230, 1427, 1431, 3099
TscAI	CASTG	7 cut(s)	314, 1228, 1307, 1379, 1602, 1866, 2377
TseFI	GTSAC	4 cut(s)	626, 1006, 2603, 2935
TseI	GCWGC	6 cut(s)	117, 670, 1322, 1990, 2143, 3170
Tsp45I	GTSAC	4 cut(s)	626, 1006, 2603, 2935
TspGWI	ACGGA	4 cut(s)	198, 598, 705, 2610
TspRI	CASTG	7 cut(s)	314, 1228, 1307, 1379, 1602, 1866, 2377
Tth111I	GACNNNGTC	3 cut(s)	16, 95, 137
VpaK11BI	GGWCC	9 cut(s)	52, 193, 205, 473, 1266, 2491, 2651, 2783, 2795
XagI	CCTNNNNNAGG	1 cut(s)	2838
XapI	RAATTY	5 cut(s)	1920, 2051, 2204, 2671, 3039
XbaI	TCTAGA	1 cut(s)	2857
XceI	RCATGY	1 cut(s)	1565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1284
XmaJI	CCTAGG	1 cut(s)	2815
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	3 cut(s)	989, 1239, 2745
XspI	CTAG	4 cut(s)	1661, 2816, 2840, 2858
Zsp2I	ATGCAT	2 cut(s)	1765, 2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.