Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

6366319 .. 6369958

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGCGGAAGATAAATCAGAACCATTGGTGGTGTACCTTCACGGCAACCTGGATTTGAAAATCATAGAGGCTCGATATTTGCCCAACATGGACATGCTCTCCGAGCGATTCCGGCGATTGTTCTCGGCCTGCCGCAAGCCATTCTCGAGCGCTAAACAGCACCGCAGTCACCATAAAATCATCACCAGCGACCCTTACGTCACGGTCTGCCTCGCCGGAGCTACCGTCGCCAGGACGCGCGTGATCTCCAACTCCCAGAACCCGGAATGGAAGGAGCATTTCAAGATCCCTCTCGCCCACCCCGTCTCGCAAGTCGACTTCTACGTCAAAGACAACGACATGTTCGGCGCCGATTTAATCGGCGTCGCGTCCGTCCCAGCTCAGCGAATCCTCTCCGGCGAGACGATCAGCGATTGGTTTCCGATAATCGGGCCGTTGGGGAAGCCGCCGAAACCGGACTCGGCGGTTAGGTTGGAAATGAGGTTCACGAAATGCGAGGACAATCCGTTGTATCAGTACGGAATATCCCACGAACGTTTCGGGGGAGTCGAGAATTGTTACTTTCCGGCACGGCGAGGAGGTCACGTGACGCTGTACCAGGACGCGCACGTGCCGGACTCGGTGATGGAGGACATAGAATTGGACGACGGGGTTCAGTTTGAGCATGGGAAGTGCTGGGAGGATATATGTCACGCAATCTTGGAGGCCCATCATTTGGTGTACATTGTGGGCTGGTCCATTTATCACAAGGTCAAGGTGGTCAGAGAGCCCAGTAAGCCCTTGCCCAGTGGCGGCAATTTGAATTTGGGGGAGTTGCTCAAGTATAAATCCCAGGAAGGGTTGAGAGTTTTGTTGCTGGTTTGGGATGATAAGACTTCTCACAGCAAGTTCTTCATCAATACGACCGGAGTGATGCAAACGCATGATGAAGAAACCAGGAAGTTTTTTAAGCATTCTTCGGTGTCATGCGTGCTGTCACCGCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGCATGCTTTATACCATGGTTCAGTTACTGTTTCAATTATCTATTTATTTTGATCGAAAAATTATATAATGATTTCGTTGTTGGGACCTTGTTTACGCATCATCAAAAGTGTGTGATTGTGGACACACAAGCGTCCGGGAACAATCGAAAGATTACTGCATTTATAGGAGGTCTGGACCTCTGTGATGGCCGCTATGATACTCCTGAACATCGGCTGTTTCGCGATGTTGACACAGTTTTCCAGGGTGATTTCCATAATCCCACATTGGCTGGTACAAAGGGTCCAAGACAACCCTGGCATGATCTACATTGCAAAATTGAAGGGCCGGCCGCATACGATGTGCTAACTAATTTTGAGCAGCGTTGGAAAAGAGCCACAAAATGGTCAGAGTTGGGCCAACGCTTTAAAAGAGTGTCGCGTTGGCACGACGATGCTTTGATCAAGTTGGAGCGCATCTCATGGATACTTAGCCCCGCACCAAAAAGTTCCAATGATGATCCTGTATTACGGGTTTCAGATGATGATGATCCTCAAAACTGGCGTGTTCAGATATTCCGATCCATAGATTCTGGATCTGTGAAAGGATTTCCCAAAGATGTCTATGAAGCTGAGAATCAGAATCTTTTCTGCGCCAAAAATTTGGTTATAGACAAGAGCATCCAAACAGCATATATCGAAGCAATCAGATCTGCGCAACACTTCATATACATTGAGAATCAGTATTTCCTCGGATCATCTTATGCATGGCCAACTTACAAAGAAGCAGGTGCTGACAATTTAATTCCAATGGAGTTGGCATTAAAGATTGCTAGTAAGATACGAGCCAAAGAGAGATTTGCAGTTTATGTCGTGATACCAATGTGGCCAGAAGGTGTGCCCTCTTCTGCTCCTGTGCAACAAATTCTCTTTTGGCAGGGACAAACAATGCAAATGATGTATGAAATCATAGCAAAAGAGCTGAAATCCATGAATATTGCGAATGCTCATCCGCAGGACTACCTAAATTTCTACTGTCTTGGTAATCGGGAAAAGCTGCCTGCCACAGTGTCCTGTACAAATAACCAAGCTCCCAGAACTGGTTCTCCAAGTCACACGGTTTCCGCCTCCCAAAAATTTCAACGGTTTATGATTTATGTTCATGCCAAGGGAATGGTAGTAGATGATGAGTACGTGATAATAGGTTCTGCGAATATCAACCAACGATCCATGGCAGGATCTAGGGACACCGAGATAGCCATGGGGGCATTTCAACCGCATCACACGTGGGGTAAGAAGAAGCGGCATCCTCATGGCCAGGTATATGGATATAGAATGTCACTTTGGGCAGAACACATGGGGATGGTTGAGAATTGCTTCAAGGAGCCTCAAACATTAGAATGTGTGAAGCGTGTGAACGACATTGGTCAGGATAATTGGAGTAGGTTCGTGGCCGATGATTTTATAGAATTGCAGGGACACCTCGTCAAATACCCAGTTGAGGTTTATGCCAATGGGAAGGTAGGCGCATTGCCTGGACGAGAGAGCTTCCCTGATGTTGGCGGTAAGATCCTCGGCGCCCGCACTAACCTTCCTGATGCTTTAACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

870

Amino Acids

99.02

Weight (kDa)

7.61

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	16 - 141	1.7e-17	C2 domain
PLDc_2	PF13091	714 - 751	2.9e-06	PLD-like domain
PLDc	PF00614	717 - 742	2.6e-08	Phospholipase D Active site motif
PLD_C	PF12357	789 - 859	1.2e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1775
AasI	GACNNNNNNGTC	2 cut(s)	197, 323
Acc16I	TGCGCA	1 cut(s)	1713
Acc36I	ACCTGC	1 cut(s)	1775
AccB1I	GGYRCC	2 cut(s)	347, 2573
AccB7I	CCANNNNNTGG	2 cut(s)	715, 1401
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
AclI	AACGTT	1 cut(s)	535
AclWI	GGATC	9 cut(s)	280, 1511, 1541, 1572, 1600, 1759, 2217, 2242, 2560
AcoI	YGGCCR	6 cut(s)	1207, 1347, 1766, 1883, 2311, 2448
AcsI	RAATTY	5 cut(s)	802, 1657, 1920, 2023, 2132
AcvI	CACGTG	3 cut(s)	586, 610, 2283
AcyI	GRCGYC	3 cut(s)	348, 363, 2574
AfaI	GTAC	7 cut(s)	35, 518, 596, 722, 1294, 2074, 2189
AfeI	AGCGCT	1 cut(s)	151
AflIII	ACRYGT	2 cut(s)	339, 2280
AgsI	TTSAA	9 cut(s)	58, 283, 802, 1012, 1054, 1340, 2138, 2270, 2377
AhdI	GACNNNNNGTC	1 cut(s)	2480
AjnI	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1260, 1313, 2313, 2530
AjuI	GAANNNNNNNTTGG	2 cut(s)	2323, 2355
AloI	GAACNNNNNNTCC	4 cut(s)	467, 499, 2086, 2118
AluBI	AGCT	8 cut(s)	221, 380, 1000, 1628, 1978, 2053, 2087, 2544
AluI	AGCT	8 cut(s)	221, 380, 1000, 1628, 1978, 2053, 2087, 2544
Alw26I	GTCTC	2 cut(s)	310, 395
AlwI	GGATC	9 cut(s)	280, 1511, 1541, 1572, 1600, 1759, 2217, 2242, 2560
AlwNI	CAGNNNCTG	2 cut(s)	1047, 1790
Ama87I	CYCGRG	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	1378, 2053
ApoI	RAATTY	5 cut(s)	802, 1657, 1920, 2023, 2132
Asp700I	GAANNNNTTC	3 cut(s)	1643, 2098, 2372
AspLEI	GCGC	9 cut(s)	152, 240, 350, 607, 1473, 1652, 1714, 2525, 2576
AspS9I	GGNCC	8 cut(s)	431, 706, 735, 1104, 1195, 1301, 1343, 1414
AsuC2I	CCSGG	2 cut(s)	263, 1156
AsuHPI	GGTGA	5 cut(s)	161, 175, 634, 969, 1277
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	4 cut(s)	735, 1104, 1195, 1301
BaeGI	GKGCMC	1 cut(s)	1899
BaeI	ACNNNNGTAYC	2 cut(s)	1865, 1898
BalI	TGGCCA	3 cut(s)	1768, 1885, 2313
BanI	GGYRCC	2 cut(s)	347, 2573
BanII	GRGCYC	1 cut(s)	771
BbrPI	CACGTG	3 cut(s)	586, 610, 2283
BbvI	GCAGC	2 cut(s)	1390, 2040
BccI	CCATC	4 cut(s)	619, 717, 1199, 2353
BceAI	ACGGC	3 cut(s)	58, 418, 587
BciT130I	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1262, 1315, 2315, 2532
BciVI	GTATCC	1 cut(s)	1476
BclI	TGATCA	1 cut(s)	1458
BcnI	CCSGG	2 cut(s)	263, 1156
BcoDI	GTCTC	2 cut(s)	310, 395
BfaI	CTAG	2 cut(s)	1830, 2238
BfoI	RGCGCY	3 cut(s)	153, 351, 2577
BfuAI	ACCTGC	1 cut(s)	1775
BfuI	GTATCC	1 cut(s)	1476
BglI	GCCNNNNNGGC	1 cut(s)	2261
BglII	AGATCT	1 cut(s)	1706
BisI	GCNGC	8 cut(s)	133, 446, 793, 1210, 1350, 1379, 2054, 2300
BlpI	GCTNAGC	2 cut(s)	381, 1001
BlsI	GCNGC	8 cut(s)	134, 447, 794, 1211, 1351, 1380, 2055, 2301
Bme18I	GGWCC	4 cut(s)	735, 1104, 1195, 1301
BmeRI	GACNNNNNGTC	1 cut(s)	2480
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	8 cut(s)	431, 706, 735, 1104, 1195, 1301, 1343, 1414
BmiI	GGNNCC	5 cut(s)	349, 1105, 1302, 2382, 2575
BmrI	ACTGGG	3 cut(s)	765, 780, 2486
BmsI	GCATC	8 cut(s)	903, 1126, 1441, 1482, 1686, 2284, 2311, 2584
BmuI	ACTGGG	3 cut(s)	765, 780, 2486
BoxI	GACNNNNGTC	1 cut(s)	2421
BplI	GAGNNNNNCTC	2 cut(s)	1460, 1492
Bpu1102I	GCTNAGC	2 cut(s)	381, 1001
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	2 cut(s)	263, 1156
BsaAI	YACGTR	4 cut(s)	586, 610, 2191, 2283
BsaBI	GATNNNNATC	1 cut(s)	1545
BsaHI	GRCGYC	3 cut(s)	348, 363, 2574
BsaJI	CCNNGG	9 cut(s)	831, 1034, 1261, 1313, 1747, 2163, 2226, 2256, 2569
BsaWI	WCCGGW	2 cut(s)	454, 905
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 210, 240, 570, 600, 2086, 2116
Bse118I	RCCGGY	1 cut(s)	1345
Bse1I	ACTGG	5 cut(s)	771, 786, 1562, 2101, 2492
Bse3DI	GCAATG	2 cut(s)	1327, 2525
Bse8I	GATNNNNATC	1 cut(s)	1545
BseBI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1262, 1315, 2315, 2532
BseDI	CCNNGG	9 cut(s)	831, 1034, 1261, 1313, 1747, 2163, 2226, 2256, 2569
BseGI	GGATG	5 cut(s)	871, 1677, 2005, 2302, 2364
BseJI	GATNNNNATC	1 cut(s)	1545
BseMI	GCAATG	2 cut(s)	1327, 2525
BseMII	CTCAG	2 cut(s)	395, 1620
BseNI	ACTGG	5 cut(s)	771, 786, 1562, 2101, 2492
BseRI	GAGGAG	1 cut(s)	591
BseSI	GKGCMC	1 cut(s)	1899
BseX3I	CGGCCG	1 cut(s)	1347
BseXI	GCAGC	2 cut(s)	1390, 2040
BseYI	CCCAGC	2 cut(s)	376, 675
Bsh1236I	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
Bsh1285I	CGRYCG	2 cut(s)	906, 1350
BshNI	GGYRCC	2 cut(s)	347, 2573
BsiEI	CGRYCG	2 cut(s)	906, 1350
BsiHKCI	CYCGRG	1 cut(s)	145
BslFI	GGGAC	5 cut(s)	359, 1117, 1950, 2255, 2487
BsmAI	GTCTC	2 cut(s)	310, 395
BsmBI	CGTCTC	2 cut(s)	310, 395
BsmFI	GGGAC	5 cut(s)	359, 1117, 1950, 2255, 2487
BsmI	GAATGC	2 cut(s)	952, 2005
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	771, 1899
Bsp1407I	TGTACA	2 cut(s)	720, 2072
Bsp1720I	GCTNAGC	2 cut(s)	381, 1001
Bsp19I	CCATGG	3 cut(s)	1034, 2226, 2256
Bsp68I	TCGCGA	1 cut(s)	1242
BspCNI	CTCAG	2 cut(s)	394, 1621
BspFNI	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
BspLI	GGNNCC	5 cut(s)	349, 1105, 1302, 2382, 2575
BspMI	ACCTGC	1 cut(s)	1775
BspPI	GGATC	9 cut(s)	280, 1511, 1541, 1572, 1600, 1759, 2217, 2242, 2560
BspT107I	GGYRCC	2 cut(s)	347, 2573
BsrDI	GCAATG	2 cut(s)	1327, 2525
BsrFI	RCCGGY	1 cut(s)	1345
BsrGI	TGTACA	2 cut(s)	720, 2072
BsrI	ACTGG	5 cut(s)	771, 786, 1562, 2101, 2492
BssAI	RCCGGY	1 cut(s)	1345
BssECI	CCNNGG	9 cut(s)	831, 1034, 1261, 1313, 1747, 2163, 2226, 2256, 2569
BssNI	GRCGYC	3 cut(s)	348, 363, 2574
BssT1I	CCWWGG	4 cut(s)	1034, 2163, 2226, 2256
Bst2UI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1262, 1315, 2315, 2532
Bst4CI	ACNGT	8 cut(s)	205, 226, 1049, 1255, 2033, 2065, 2116, 2142
Bst6I	CTCTTC	1 cut(s)	1906
BstACI	GRCGYC	3 cut(s)	348, 363, 2574
BstAUI	TGTACA	2 cut(s)	720, 2072
BstBAI	YACGTR	4 cut(s)	586, 610, 2191, 2283
BstC8I	GCNNGC	8 cut(s)	130, 137, 971, 991, 1024, 1347, 2058, 2578
BstDEI	CTNAG	4 cut(s)	381, 1001, 1487, 1629
BstDSI	CCRYGG	3 cut(s)	1034, 2226, 2256
BstF5I	GGATG	5 cut(s)	871, 1677, 2005, 2302, 2364
BstFNI	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
BstH2I	RGCGCY	3 cut(s)	153, 351, 2577
BstHHI	GCGC	9 cut(s)	152, 240, 350, 607, 1473, 1652, 1714, 2525, 2576
BstMAI	GTCTC	2 cut(s)	310, 395
BstMCI	CGRYCG	2 cut(s)	906, 1350
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 112, 227, 775, 979, 2261
BstNI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1262, 1315, 2315, 2532
BstNSI	RCATGY	3 cut(s)	97, 343, 1026
BstPAI	GACNNNNGTC	1 cut(s)	2421
BstSLI	GKGCMC	1 cut(s)	1899
BstUI	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
BstV1I	GCAGC	2 cut(s)	1390, 2040
BstX2I	RGATCY	5 cut(s)	285, 1592, 1706, 2234, 2565
BstXI	CCANNNNNNTGG	3 cut(s)	1660, 2170, 2321
BstYI	RGATCY	5 cut(s)	285, 1592, 1706, 2234, 2565
BstZI	CGGCCG	1 cut(s)	1347
BsuI	GTATCC	1 cut(s)	1476
BtgI	CCRYGG	3 cut(s)	1034, 2226, 2256
BtgZI	GCGATG	1 cut(s)	1257
BtsCI	GGATG	5 cut(s)	871, 1677, 2005, 2302, 2364
BtsIMutI	CAGTG	2 cut(s)	793, 2070
BtuMI	TCGCGA	1 cut(s)	1242
BveI	ACCTGC	1 cut(s)	1775
Cac8I	GCNNGC	8 cut(s)	130, 137, 971, 991, 1024, 1347, 2058, 2578
CaiI	CAGNNNCTG	2 cut(s)	1047, 1790
CfoI	GCGC	9 cut(s)	152, 240, 350, 607, 1473, 1652, 1714, 2525, 2576
Cfr10I	RCCGGY	1 cut(s)	1345
Cfr13I	GGNCC	8 cut(s)	431, 706, 735, 1104, 1195, 1301, 1343, 1414
CseI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1140
Csp6I	GTAC	7 cut(s)	34, 517, 595, 721, 1293, 2073, 2188
CviQI	GTAC	7 cut(s)	34, 517, 595, 721, 1293, 2073, 2188
DdeI	CTNAG	4 cut(s)	381, 1001, 1487, 1629
DinI	GGCGCC	2 cut(s)	349, 2575
DraI	TTTAAA	1 cut(s)	1426
DrdI	GACNNNNNNGTC	2 cut(s)	197, 323
DriI	GACNNNNNGTC	1 cut(s)	2480
DseDI	GACNNNNNNGTC	2 cut(s)	197, 323
EaeI	YGGCCR	6 cut(s)	1207, 1347, 1766, 1883, 2311, 2448
EagI	CGGCCG	1 cut(s)	1347
Eam1104I	CTCTTC	1 cut(s)	1906
Eam1105I	GACNNNNNGTC	1 cut(s)	2480
EarI	CTCTTC	1 cut(s)	1906
EciI	GGCGGA	2 cut(s)	20, 2110
EclXI	CGGCCG	1 cut(s)	1347
Eco130I	CCWWGG	4 cut(s)	1034, 2163, 2226, 2256
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	4 cut(s)	735, 1104, 1195, 1301
Eco47III	AGCGCT	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	1347
Eco72I	CACGTG	3 cut(s)	586, 610, 2283
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	1104
EcoRII	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1260, 1313, 2313, 2530
EcoT14I	CCWWGG	4 cut(s)	1034, 2163, 2226, 2256
EcoT22I	ATGCAT	1 cut(s)	1765
EcoT38I	GRGCYC	1 cut(s)	771
EgeI	GGCGCC	2 cut(s)	349, 2575
EheI	GGCGCC	2 cut(s)	349, 2575
ErhI	CCWWGG	4 cut(s)	1034, 2163, 2226, 2256
Esp3I	CGTCTC	2 cut(s)	310, 395
FaqI	GGGAC	5 cut(s)	359, 1117, 1950, 2255, 2487
FauI	CCCGC	2 cut(s)	1501, 2585
FbaI	TGATCA	1 cut(s)	1458
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	133, 446, 793, 1210, 1350, 1379, 2054, 2300
FokI	GGATG	5 cut(s)	878, 1664, 1992, 2289, 2371
FriOI	GRGCYC	1 cut(s)	771
FseI	GGCCGGCC	1 cut(s)	1349
Fsp4HI	GCNGC	8 cut(s)	133, 446, 793, 1210, 1350, 1379, 2054, 2300
FspBI	CTAG	2 cut(s)	1830, 2238
FspI	TGCGCA	1 cut(s)	1713
GlaI	GCGC	9 cut(s)	151, 239, 349, 606, 1472, 1651, 1713, 2524, 2575
GluI	GCNGC	8 cut(s)	133, 446, 793, 1210, 1350, 1379, 2054, 2300
GsaI	CCCAGC	2 cut(s)	380, 679
HaeII	RGCGCY	3 cut(s)	153, 351, 2577
HgaI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1140
HhaI	GCGC	9 cut(s)	152, 240, 350, 607, 1473, 1652, 1714, 2525, 2576
Hin1I	GRCGYC	3 cut(s)	348, 363, 2574
Hin6I	GCGC	9 cut(s)	150, 238, 348, 605, 1471, 1650, 1712, 2523, 2574
HinP1I	GCGC	9 cut(s)	150, 238, 348, 605, 1471, 1650, 1712, 2523, 2574
HincII	GTYRAC	2 cut(s)	316, 1249
HindII	GTYRAC	2 cut(s)	316, 1249
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	9 cut(s)	108, 387, 458, 546, 617, 1586, 1633, 1639, 1735
HphI	GGTGA	5 cut(s)	161, 175, 634, 969, 1277
Hpy166II	GTNNAC	8 cut(s)	34, 316, 486, 721, 1113, 1141, 1249, 2413
Hpy8I	GTNNAC	8 cut(s)	34, 316, 486, 721, 1113, 1141, 1249, 2413
Hpy99I	CGWCG	4 cut(s)	230, 368, 650, 1451
HpyAV	CCTTC	7 cut(s)	47, 265, 830, 1334, 1883, 2509, 2597
HpyCH4III	ACNGT	8 cut(s)	205, 226, 1049, 1255, 2033, 2065, 2116, 2142
HpyCH4IV	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2190, 2282
HpyCH4V	TGCA	8 cut(s)	916, 1178, 1332, 1763, 1859, 1915, 1948, 2470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 112, 227, 775, 979, 2261
HpyF3I	CTNAG	4 cut(s)	381, 1001, 1487, 1629
HpySE526I	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2190, 2282
Hsp92I	GRCGYC	3 cut(s)	348, 363, 2574
HspAI	GCGC	9 cut(s)	150, 238, 348, 605, 1471, 1650, 1712, 2523, 2574
KasI	GGCGCC	2 cut(s)	347, 2573
KroI	GCCGGC	1 cut(s)	1345
KroNI	GCCGGC	1 cut(s)	1347
Ksp22I	TGATCA	1 cut(s)	1458
LmnI	GCTCC	6 cut(s)	218, 274, 1468, 1912, 2092, 2380
Lsp1109I	GCAGC	2 cut(s)	1390, 2040
LweI	GCATC	8 cut(s)	903, 1126, 1441, 1482, 1686, 2284, 2311, 2584
MaeI	CTAG	2 cut(s)	1830, 2238
MaeII	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2190, 2282
MboII	GAAGA	6 cut(s)	20, 883, 941, 948, 1893, 2305
MflI	RGATCY	5 cut(s)	285, 1592, 1706, 2234, 2565
MhlI	GDGCHC	2 cut(s)	771, 1899
MlsI	TGGCCA	3 cut(s)	1768, 1885, 2313
MluNI	TGGCCA	3 cut(s)	1768, 1885, 2313
Mly113I	GGCGCC	2 cut(s)	348, 2574
MlyI	GAGTC	3 cut(s)	452, 555, 611
MmeI	TCCRAC	4 cut(s)	273, 453, 1364, 1446
Mox20I	TGGCCA	3 cut(s)	1768, 1885, 2313
Mph1103I	ATGCAT	1 cut(s)	1765
MroNI	GCCGGC	1 cut(s)	1345
MroXI	GAANNNNTTC	3 cut(s)	1643, 2098, 2372
MscI	TGGCCA	3 cut(s)	1768, 1885, 2313
MseI	TTAA	7 cut(s)	356, 948, 1425, 1799, 1820, 2600, 2608
MslI	CAYNNNNRTG	5 cut(s)	92, 1449, 2307, 2357, 2395
Msp20I	TGGCCA	3 cut(s)	1768, 1885, 2313
Mva1269I	GAATGC	2 cut(s)	952, 2005
MvaI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1262, 1315, 2315, 2532
MvnI	CGCG	7 cut(s)	238, 240, 368, 605, 982, 1242, 1438
MwoI	GCNNNNNNNGC	6 cut(s)	103, 112, 227, 775, 979, 2261
NaeI	GCCGGC	1 cut(s)	1347
NarI	GGCGCC	2 cut(s)	348, 2574
NciI	CCSGG	2 cut(s)	263, 1156
NcoI	CCATGG	3 cut(s)	1034, 2226, 2256
NgoMIV	GCCGGC	1 cut(s)	1345
NlaIV	GGNNCC	5 cut(s)	349, 1105, 1302, 2382, 2575
NmeAIII	GCCGAG	3 cut(s)	104, 440, 2550
NmuCI	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2108, 2334
NruI	TCGCGA	1 cut(s)	1242
NsbI	TGCGCA	1 cut(s)	1713
NsiI	ATGCAT	1 cut(s)	1765
NspI	RCATGY	3 cut(s)	97, 343, 1026
PaeI	GCATGC	1 cut(s)	1026
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	1775
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 321, 546
PctI	GAATGC	2 cut(s)	952, 2005
PdiI	GCCGGC	1 cut(s)	1347
PdmI	GAANNNNTTC	3 cut(s)	1643, 2098, 2372
PfeI	GAWTC	6 cut(s)	108, 387, 1586, 1633, 1639, 1735
PflMI	CCANNNNNTGG	2 cut(s)	715, 1401
PfoI	TCCNGGA	1 cut(s)	1154
PkrI	GCNGC	8 cut(s)	134, 447, 794, 1211, 1351, 1380, 2055, 2301
PleI	GAGTC	3 cut(s)	452, 554, 611
PluTI	GGCGCC	2 cut(s)	351, 2577
PmaCI	CACGTG	3 cut(s)	586, 610, 2283
PmlI	CACGTG	3 cut(s)	586, 610, 2283
PpsI	GAGTC	3 cut(s)	452, 554, 611
Ppu21I	YACGTR	4 cut(s)	586, 610, 2191, 2283
PpuMI	RGGWCCY	1 cut(s)	1104
PscI	ACATGT	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	2421
Psp1406I	AACGTT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	1104
Psp6I	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1260, 1313, 2313, 2530
PspCI	CACGTG	3 cut(s)	586, 610, 2283
PspFI	CCCAGC	2 cut(s)	376, 675
PspGI	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1260, 1313, 2313, 2530
PspN4I	GGNNCC	5 cut(s)	349, 1105, 1302, 2382, 2575
PspPI	GGNCC	8 cut(s)	431, 706, 735, 1104, 1195, 1301, 1343, 1414
PspPPI	RGGWCCY	1 cut(s)	1104
PstNI	CAGNNNCTG	2 cut(s)	1047, 1790
PsuI	RGATCY	5 cut(s)	285, 1592, 1706, 2234, 2565
RigI	GGCCGGCC	1 cut(s)	1349
RruI	TCGCGA	1 cut(s)	1242
RsaI	GTAC	7 cut(s)	35, 518, 596, 722, 1294, 2074, 2189
RsaNI	GTAC	7 cut(s)	34, 517, 595, 721, 1293, 2073, 2188
RseI	CAYNNNNRTG	5 cut(s)	92, 1449, 2307, 2357, 2395
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	7 cut(s)	356, 948, 1425, 1799, 1820, 2600, 2608
SatI	GCNGC	8 cut(s)	133, 446, 793, 1210, 1350, 1379, 2054, 2300
Sau96I	GGNCC	8 cut(s)	431, 706, 735, 1104, 1195, 1301, 1343, 1414
SchI	GAGTC	3 cut(s)	452, 555, 611
SduI	GDGCHC	2 cut(s)	771, 1899
SfaNI	GCATC	8 cut(s)	903, 1126, 1441, 1482, 1686, 2284, 2311, 2584
SfoI	GGCGCC	2 cut(s)	349, 2575
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	4 cut(s)	735, 1104, 1195, 1301
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	5 cut(s)	92, 1449, 2307, 2357, 2395
SmlI	CTYRAG	2 cut(s)	145, 818
SmoI	CTYRAG	2 cut(s)	145, 818
SphI	GCATGC	1 cut(s)	1026
SspDI	GGCGCC	2 cut(s)	347, 2573
SspI	AATATT	1 cut(s)	1993
SspMI	CTAG	2 cut(s)	1830, 2238
StyI	CCWWGG	4 cut(s)	1034, 2163, 2226, 2256
TaaI	ACNGT	8 cut(s)	205, 226, 1049, 1255, 2033, 2065, 2116, 2142
TaiI	ACGT	7 cut(s)	201, 327, 538, 588, 612, 2193, 2285
TaqI	TCGA	7 cut(s)	73, 146, 315, 549, 1074, 1165, 1695
TatI	WGTACW	2 cut(s)	720, 2072
TauI	GCSGC	6 cut(s)	135, 448, 795, 1212, 1352, 2302
TfiI	GAWTC	6 cut(s)	108, 387, 1586, 1633, 1639, 1735
Tru1I	TTAA	7 cut(s)	356, 948, 1425, 1799, 1820, 2600, 2608
Tru9I	TTAA	7 cut(s)	356, 948, 1425, 1799, 1820, 2600, 2608
TscAI	CASTG	2 cut(s)	793, 2070
TseFI	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2108, 2334
TseI	GCWGC	2 cut(s)	1378, 2053
Tsp45I	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2108, 2334
TspDTI	ATGAA	7 cut(s)	883, 942, 1638, 1711, 1974, 2003, 2147
TspGWI	ACGGA	3 cut(s)	361, 495, 534
TspRI	CASTG	2 cut(s)	793, 2070
Van91I	CCANNNNNTGG	2 cut(s)	715, 1401
VpaK11BI	GGWCC	4 cut(s)	735, 1104, 1195, 1301
XapI	RAATTY	5 cut(s)	802, 1657, 1920, 2023, 2132
XceI	RCATGY	3 cut(s)	97, 343, 1026
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1311
XhoI	CTCGAG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	3 cut(s)	1643, 2098, 2372
XspI	CTAG	2 cut(s)	1830, 2238
Zsp2I	ATGCAT	1 cut(s)	1765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.