Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

6428357 .. 6432282

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGGCGGAAGATAAGTCAGAACCATTGGTGGTGTACCTTCACGGCAACCTGGATTTGAAAATCATAGAGGCGCGATATTTGCCCAACATGGACATGCTCTCCGAGCGATTCCGGCGATTGTTCTCGGCCTGCCGCAAGCCATTCTCGAGCGCTAAACAGCACCGCAGTCACCATAAAATCATCACCAGCGACCCTTACGTCACGGTCTGCCTCGCCGGAGCTACCGTCGCCAGGACGCGCGTGATCTCCAACTCCCAGAACCCGGAATGGAAGGAGCATTTCAAGATCCCTCTCGCCCACCCAGTCTCGCAAGTCGAGTTCTACGTGAAAGACAACGACATGTTCGGCGCCGATTTAATCGGAGTCGCGTCCGTCTCGGCGCAGCGAATCCTCTCCGGCGAGACGATCAGCGATTGGTTTCCAATAATAGGGCCGTTGGGGAAGCCGCCGAAACCGGACTCGGCGGTTAGGTTGGAAATGAGGTTCACGAAATGCGAGGACAATCCGTTGTATCAGTACGGAATATCCCACGAACGTTTCCGGGGAGTCGAGAATTGTTACTTTCCGGCACGGCAAGGAGGTCACGTGACGCTGTACCAGGACGCGCACGTGCCGGACTCGGTGATGGAGGACATAGAATTGGACGACGGGGTTCAGTTTGAGCATGGGAAGTGCTGGGAGGATATATGTCACGCTATCTTGGAGGCCCATCATTTGGTGTACATTGTGGGCTGGTCCATTTATCACAAGGTCAAGGTGGTCAGAGAGCCCAGTAAGCCCTTGCCCAGTGGCGGCAATTTGAATTTGGGGGAGTTGCTCAAGTATAAATCCCAGGAAGGGTTGAGAGTTTTGTTGCTGGTTTGGGATGACAAGACTTCACACAGCAAGTTCTTCATCAATACGGTTGTTGGGACCTTGTTTACGCATCATCAAAAGTGTGTGATTGTGGATACACAAGCGTCTGGAAACAATCGAAAGATTACTGCATTTATAGGAGGTCTTGACCTCTGTGATGGCCGCTATGATACTCCTGAACATCGGCTGTTTCGCGATGTTGACACAGTTTTCCAGGGTGATTTCCATAATCCCACATTGGCTGGTACAAAGGGTCCAAGACAACCCTGGCATGATCTACATTGCAAAATTGAAGGGCCGGCTGCATACGATGTGCTAACTAATTTTGAGCAGCGTTGGAAAAGAGCCACAAAATGGTCAGAGTTGGGCCAACGCTTTAAAAGAGTGTCGCGTTGGCACGACGATGCTTTGATCAAGTTGGAGCGCATCTCATGGATACTTAGTCCCGCACCAAAAAGTTCCAATGATGATCCTGTATTACGGGTTTCAGATGAAGATGATCCTCAAAACTGGCGTGTTCAGATATTCCGATCCATAGATTCTGGATCTGTGAAAGGATTTCCCAAAGATGTCTATGAAGCTGAGAATCAGAATCTTTTCTGTGCCAAAAATTTGGTTATAGACAAGAGCATCCAAACAGCATATATCGAAGCAATCAGATCTGCGCAACACTTCATATACATTGAGAATCAGTATTTCCTCGGATCTTCTTATGCATGGCCAACTTACAAAGAAGCAGGTGCTGACAATTTAATTCCAATGGAGTTGGCATTAAAGATTGCTAGTAAGATACGAGCCAAAGAGAGATTTGCAGTTTATGTCGTGATACCAATGTGGCCAGAAGGTGTGCCCTCTTCTGCTCCTGTGCAACAAATTCTCTTTTGGCAGGGACAAACAATGCAAATGATGTATGAAATCATAGCAAAAGAGCTGAAATCCATGAATATTGCGAATGCTCATCCGCAGGACTACCTAAATTTCTACTGTCTTGGTAATCGGGAAAAGCTGCCTGCCACAGTGTCCTGTACAAATAACCAAGCTCCGAGAACTGGTTCTCCAGGTCACACGGTTTCCGCCTCCCAAAGATTTCAACGGTTTATGATTTATGTTCATGCCAAGGGAATGGTAGTAGATGATGAGTACGTGATAATAGGTTCTGCGAATATCAACCAACGATCCATGGCAGGATCTAGGGACACCGAGATAGCCATGGGGGCATTTCAACCGCATCACACGTGGGGTAAGAAGAAGCGGCATCCTCATGGCCAGGTATATGGATATAGAATGTCACTTTGGGCAGAACACATGGGGATGGTTGAGAATTGCTTCAAGGAGCCTCAAACATTAGAATGTGTGAAGCGTGTGAACGACATTGGTCAGGATAATTGGAGTAGGTTCGTGGCCGATGATTTTATAGAATTGCAGGGACACCTCATCAAATACCCAGTTGAGGTTTATGCCAATGGGAAGGTAGGCGCATTGCCTGGACGAGAGAGCTTCCCTGATGTTGGCGGTAAGATCCTCGGCGCCCGCACTAACCTTCCTGATGCTTTAACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

805

Amino Acids

91.49

Weight (kDa)

7.2

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	16 - 141	1.4e-17	C2 domain
PLDc_2	PF13091	651 - 687	3.3e-06	PLD-like domain
PLDc	PF00614	653 - 678	2.4e-08	Phospholipase D Active site motif
PLD_C	PF12357	725 - 795	1.2e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1583
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	1521
Acc36I	ACCTGC	1 cut(s)	1583
AccB1I	GGYRCC	2 cut(s)	347, 2381
AccB7I	CCANNNNNTGG	2 cut(s)	715, 1209
AccII	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
AclI	AACGTT	1 cut(s)	535
AclWI	GGATC	9 cut(s)	280, 1319, 1349, 1380, 1408, 1567, 2025, 2050, 2368
AcoI	YGGCCR	5 cut(s)	1015, 1574, 1691, 2119, 2256
AcsI	RAATTY	4 cut(s)	802, 1465, 1728, 1831
AcvI	CACGTG	3 cut(s)	586, 610, 2091
AcyI	GRCGYC	2 cut(s)	348, 2382
AfaI	GTAC	7 cut(s)	35, 518, 596, 722, 1102, 1882, 1997
AfeI	AGCGCT	1 cut(s)	151
AflIII	ACRYGT	2 cut(s)	339, 2088
AgsI	TTSAA	7 cut(s)	58, 283, 802, 1148, 1946, 2078, 2185
AjnI	CCWGG	9 cut(s)	48, 230, 597, 831, 1068, 1121, 1912, 2121, 2338
AjuI	GAANNNNNNNTTGG	2 cut(s)	2131, 2163
AloI	GAACNNNNNNTCC	4 cut(s)	467, 499, 1894, 1926
AluBI	AGCT	6 cut(s)	221, 1436, 1786, 1861, 1895, 2352
AluI	AGCT	6 cut(s)	221, 1436, 1786, 1861, 1895, 2352
Alw26I	GTCTC	3 cut(s)	310, 379, 395
AlwI	GGATC	9 cut(s)	280, 1319, 1349, 1380, 1408, 1567, 2025, 2050, 2368
AlwNI	CAGNNNCTG	1 cut(s)	1598
Ama87I	CYCGRG	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	151
ApeKI	GCWGC	4 cut(s)	382, 1157, 1186, 1861
ApoI	RAATTY	4 cut(s)	802, 1465, 1728, 1831
Asp700I	GAANNNNTTC	3 cut(s)	1451, 1906, 2180
AspS9I	GGNCC	7 cut(s)	431, 706, 735, 912, 1109, 1151, 1222
AsuC2I	CCSGG	2 cut(s)	263, 542
AsuHPI	GGTGA	4 cut(s)	161, 175, 634, 1085
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	3 cut(s)	735, 912, 1109
BaeGI	GKGCMC	1 cut(s)	1707
BaeI	ACNNNNGTAYC	2 cut(s)	1673, 1706
BalI	TGGCCA	3 cut(s)	1576, 1693, 2121
BanI	GGYRCC	2 cut(s)	347, 2381
BanII	GRGCYC	1 cut(s)	771
BbrPI	CACGTG	3 cut(s)	586, 610, 2091
BbvI	GCAGC	4 cut(s)	394, 1144, 1198, 1848
BccI	CCATC	4 cut(s)	619, 717, 1007, 2161
BceAI	ACGGC	3 cut(s)	58, 418, 587
BciT130I	CCWGG	9 cut(s)	50, 232, 599, 833, 1070, 1123, 1914, 2123, 2340
BciVI	GTATCC	2 cut(s)	943, 1284
BclI	TGATCA	1 cut(s)	1266
BcnI	CCSGG	2 cut(s)	263, 542
BcoDI	GTCTC	3 cut(s)	310, 379, 395
BfaI	CTAG	2 cut(s)	1638, 2046
BfoI	RGCGCY	3 cut(s)	153, 351, 2385
BfuAI	ACCTGC	1 cut(s)	1583
BfuI	GTATCC	2 cut(s)	943, 1284
BglI	GCCNNNNNGGC	1 cut(s)	2069
BglII	AGATCT	1 cut(s)	1514
BisI	GCNGC	9 cut(s)	133, 383, 446, 793, 1018, 1158, 1187, 1862, 2108
BlsI	GCNGC	9 cut(s)	134, 384, 447, 794, 1019, 1159, 1188, 1863, 2109
Bme18I	GGWCC	3 cut(s)	735, 912, 1109
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	7 cut(s)	431, 706, 735, 912, 1109, 1151, 1222
BmiI	GGNNCC	5 cut(s)	349, 913, 1110, 2190, 2383
BmrI	ACTGGG	4 cut(s)	296, 765, 780, 2294
BmsI	GCATC	7 cut(s)	934, 1249, 1290, 1494, 2092, 2119, 2392
BmuI	ACTGGG	4 cut(s)	296, 765, 780, 2294
BoxI	GACNNNNGTC	1 cut(s)	2229
BplI	GAGNNNNNCTC	2 cut(s)	1268, 1300
BpmI	CTGGAG	1 cut(s)	1896
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	2 cut(s)	263, 542
BsaAI	YACGTR	5 cut(s)	325, 586, 610, 1999, 2091
BsaHI	GRCGYC	2 cut(s)	348, 2382
BsaJI	CCNNGG	9 cut(s)	541, 831, 1069, 1121, 1555, 1971, 2034, 2064, 2377
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 210, 240, 570, 600, 1894, 1924
Bse118I	RCCGGY	1 cut(s)	1153
Bse1I	ACTGG	6 cut(s)	302, 771, 786, 1370, 1909, 2300
Bse3DI	GCAATG	2 cut(s)	1135, 2333
BseBI	CCWGG	9 cut(s)	50, 232, 599, 833, 1070, 1123, 1914, 2123, 2340
BseDI	CCNNGG	9 cut(s)	541, 831, 1069, 1121, 1555, 1971, 2034, 2064, 2377
BseGI	GGATG	5 cut(s)	871, 1485, 1813, 2110, 2172
BseMI	GCAATG	2 cut(s)	1135, 2333
BseMII	CTCAG	1 cut(s)	1428
BseNI	ACTGG	6 cut(s)	302, 771, 786, 1370, 1909, 2300
BseSI	GKGCMC	1 cut(s)	1707
BseXI	GCAGC	4 cut(s)	394, 1144, 1198, 1848
BseYI	CCCAGC	1 cut(s)	675
Bsh1236I	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
BshNI	GGYRCC	2 cut(s)	347, 2381
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	9 cut(s)	112, 216, 263, 396, 455, 541, 566, 614, 1154
BslFI	GGGAC	5 cut(s)	925, 1284, 1758, 2063, 2295
BsmAI	GTCTC	3 cut(s)	310, 379, 395
BsmBI	CGTCTC	2 cut(s)	379, 395
BsmFI	GGGAC	5 cut(s)	925, 1284, 1758, 2063, 2295
BsmI	GAATGC	1 cut(s)	1813
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	771, 1707
Bsp1407I	TGTACA	2 cut(s)	720, 1880
Bsp19I	CCATGG	2 cut(s)	2034, 2064
Bsp68I	TCGCGA	1 cut(s)	1050
BspCNI	CTCAG	1 cut(s)	1429
BspFNI	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
BspLI	GGNNCC	5 cut(s)	349, 913, 1110, 2190, 2383
BspMI	ACCTGC	1 cut(s)	1583
BspPI	GGATC	9 cut(s)	280, 1319, 1349, 1380, 1408, 1567, 2025, 2050, 2368
BspT107I	GGYRCC	2 cut(s)	347, 2381
BsrDI	GCAATG	2 cut(s)	1135, 2333
BsrFI	RCCGGY	1 cut(s)	1153
BsrGI	TGTACA	2 cut(s)	720, 1880
BsrI	ACTGG	6 cut(s)	302, 771, 786, 1370, 1909, 2300
BssAI	RCCGGY	1 cut(s)	1153
BssECI	CCNNGG	9 cut(s)	541, 831, 1069, 1121, 1555, 1971, 2034, 2064, 2377
BssNI	GRCGYC	2 cut(s)	348, 2382
BssT1I	CCWWGG	3 cut(s)	1971, 2034, 2064
Bst2UI	CCWGG	9 cut(s)	50, 232, 599, 833, 1070, 1123, 1914, 2123, 2340
Bst4CI	ACNGT	8 cut(s)	205, 226, 904, 1063, 1841, 1873, 1924, 1950
Bst6I	CTCTTC	1 cut(s)	1714
BstACI	GRCGYC	2 cut(s)	348, 2382
BstAUI	TGTACA	2 cut(s)	720, 1880
BstBAI	YACGTR	5 cut(s)	325, 586, 610, 1999, 2091
BstC8I	GCNNGC	5 cut(s)	130, 137, 1155, 1866, 2386
BstDEI	CTNAG	2 cut(s)	1295, 1437
BstDSI	CCRYGG	2 cut(s)	2034, 2064
BstF5I	GGATG	5 cut(s)	871, 1485, 1813, 2110, 2172
BstFNI	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
BstH2I	RGCGCY	3 cut(s)	153, 351, 2385
BstMAI	GTCTC	3 cut(s)	310, 379, 395
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 2069
BstNI	CCWGG	9 cut(s)	50, 232, 599, 833, 1070, 1123, 1914, 2123, 2340
BstNSI	RCATGY	2 cut(s)	97, 343
BstPAI	GACNNNNGTC	1 cut(s)	2229
BstSLI	GKGCMC	1 cut(s)	1707
BstUI	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
BstV1I	GCAGC	4 cut(s)	394, 1144, 1198, 1848
BstX2I	RGATCY	6 cut(s)	285, 1400, 1514, 1559, 2042, 2373
BstXI	CCANNNNNNTGG	3 cut(s)	1468, 1978, 2129
BstYI	RGATCY	6 cut(s)	285, 1400, 1514, 1559, 2042, 2373
BsuI	GTATCC	2 cut(s)	943, 1284
BtgI	CCRYGG	2 cut(s)	2034, 2064
BtgZI	GCGATG	1 cut(s)	1065
BtsCI	GGATG	5 cut(s)	871, 1485, 1813, 2110, 2172
BtsIMutI	CAGTG	2 cut(s)	793, 1878
BtuMI	TCGCGA	1 cut(s)	1050
BveI	ACCTGC	1 cut(s)	1583
Cac8I	GCNNGC	5 cut(s)	130, 137, 1155, 1866, 2386
CaiI	CAGNNNCTG	1 cut(s)	1598
Cfr10I	RCCGGY	1 cut(s)	1153
Cfr13I	GGNCC	7 cut(s)	431, 706, 735, 912, 1109, 1151, 1222
CseI	GACGC	5 cut(s)	244, 357, 598, 611, 948
Csp6I	GTAC	7 cut(s)	34, 517, 595, 721, 1101, 1881, 1996
CviQI	GTAC	7 cut(s)	34, 517, 595, 721, 1101, 1881, 1996
DdeI	CTNAG	2 cut(s)	1295, 1437
DinI	GGCGCC	2 cut(s)	349, 2383
DraI	TTTAAA	1 cut(s)	1234
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	5 cut(s)	1015, 1574, 1691, 2119, 2256
Eam1104I	CTCTTC	1 cut(s)	1714
EarI	CTCTTC	1 cut(s)	1714
EciI	GGCGGA	2 cut(s)	20, 1918
Eco130I	CCWWGG	3 cut(s)	1971, 2034, 2064
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	3 cut(s)	735, 912, 1109
Eco47III	AGCGCT	1 cut(s)	151
Eco72I	CACGTG	3 cut(s)	586, 610, 2091
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	912
EcoRII	CCWGG	9 cut(s)	48, 230, 597, 831, 1068, 1121, 1912, 2121, 2338
EcoT14I	CCWWGG	3 cut(s)	1971, 2034, 2064
EcoT22I	ATGCAT	1 cut(s)	1573
EcoT38I	GRGCYC	1 cut(s)	771
EgeI	GGCGCC	2 cut(s)	349, 2383
EheI	GGCGCC	2 cut(s)	349, 2383
ErhI	CCWWGG	3 cut(s)	1971, 2034, 2064
Esp3I	CGTCTC	2 cut(s)	379, 395
FaqI	GGGAC	5 cut(s)	925, 1284, 1758, 2063, 2295
FauI	CCCGC	2 cut(s)	1309, 2393
FbaI	TGATCA	1 cut(s)	1266
Fnu4HI	GCNGC	9 cut(s)	133, 383, 446, 793, 1018, 1158, 1187, 1862, 2108
FokI	GGATG	5 cut(s)	878, 1472, 1800, 2097, 2179
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	9 cut(s)	133, 383, 446, 793, 1018, 1158, 1187, 1862, 2108
FspBI	CTAG	2 cut(s)	1638, 2046
FspI	TGCGCA	1 cut(s)	1521
GluI	GCNGC	9 cut(s)	133, 383, 446, 793, 1018, 1158, 1187, 1862, 2108
GsaI	CCCAGC	1 cut(s)	679
GsuI	CTGGAG	1 cut(s)	1896
HaeII	RGCGCY	3 cut(s)	153, 351, 2385
HapII	CCGG	9 cut(s)	112, 216, 263, 396, 455, 541, 566, 614, 1154
HgaI	GACGC	5 cut(s)	244, 357, 598, 611, 948
Hin1I	GRCGYC	2 cut(s)	348, 2382
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HpaII	CCGG	9 cut(s)	112, 216, 263, 396, 455, 541, 566, 614, 1154
HphI	GGTGA	4 cut(s)	161, 175, 634, 1085
Hpy166II	GTNNAC	6 cut(s)	34, 486, 721, 921, 1057, 2221
Hpy8I	GTNNAC	6 cut(s)	34, 486, 721, 921, 1057, 2221
Hpy99I	CGWCG	3 cut(s)	230, 650, 1259
HpyAV	CCTTC	7 cut(s)	47, 265, 830, 1142, 1691, 2317, 2405
HpyCH4III	ACNGT	8 cut(s)	205, 226, 904, 1063, 1841, 1873, 1924, 1950
HpyCH4IV	ACGT	7 cut(s)	198, 324, 535, 585, 609, 1998, 2090
HpyCH4V	TGCA	8 cut(s)	986, 1140, 1160, 1571, 1667, 1723, 1756, 2278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 2069
HpyF3I	CTNAG	2 cut(s)	1295, 1437
HpySE526I	ACGT	7 cut(s)	198, 324, 535, 585, 609, 1998, 2090
Hsp92I	GRCGYC	2 cut(s)	348, 2382
KasI	GGCGCC	2 cut(s)	347, 2381
KroI	GCCGGC	1 cut(s)	1153
KroNI	GCCGGC	1 cut(s)	1155
Ksp22I	TGATCA	1 cut(s)	1266
LmnI	GCTCC	6 cut(s)	218, 274, 1276, 1720, 1900, 2188
Lsp1109I	GCAGC	4 cut(s)	394, 1144, 1198, 1848
LweI	GCATC	7 cut(s)	934, 1249, 1290, 1494, 2092, 2119, 2392
MaeI	CTAG	2 cut(s)	1638, 2046
MaeII	ACGT	7 cut(s)	198, 324, 535, 585, 609, 1998, 2090
MaeIII	GTNAC	8 cut(s)	167, 199, 557, 581, 586, 689, 1916, 2142
MboII	GAAGA	6 cut(s)	20, 883, 1361, 1554, 1701, 2113
MflI	RGATCY	6 cut(s)	285, 1400, 1514, 1559, 2042, 2373
MhlI	GDGCHC	2 cut(s)	771, 1707
MlsI	TGGCCA	3 cut(s)	1576, 1693, 2121
MluNI	TGGCCA	3 cut(s)	1576, 1693, 2121
Mly113I	GGCGCC	2 cut(s)	348, 2382
MlyI	GAGTC	4 cut(s)	372, 452, 555, 611
MmeI	TCCRAC	4 cut(s)	273, 453, 1172, 1254
Mox20I	TGGCCA	3 cut(s)	1576, 1693, 2121
Mph1103I	ATGCAT	1 cut(s)	1573
MroNI	GCCGGC	1 cut(s)	1153
MroXI	GAANNNNTTC	3 cut(s)	1451, 1906, 2180
MscI	TGGCCA	3 cut(s)	1576, 1693, 2121
MseI	TTAA	5 cut(s)	356, 1233, 1607, 1628, 2408
MslI	CAYNNNNRTG	5 cut(s)	92, 1257, 2115, 2165, 2203
Msp20I	TGGCCA	3 cut(s)	1576, 1693, 2121
MspI	CCGG	9 cut(s)	112, 216, 263, 396, 455, 541, 566, 614, 1154
Mva1269I	GAATGC	1 cut(s)	1813
MvaI	CCWGG	9 cut(s)	50, 232, 599, 833, 1070, 1123, 1914, 2123, 2340
MvnI	CGCG	7 cut(s)	73, 238, 240, 368, 605, 1050, 1246
MwoI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 2069
NaeI	GCCGGC	1 cut(s)	1155
NarI	GGCGCC	2 cut(s)	348, 2382
NciI	CCSGG	2 cut(s)	263, 542
NcoI	CCATGG	2 cut(s)	2034, 2064
NgoMIV	GCCGGC	1 cut(s)	1153
NlaIV	GGNNCC	5 cut(s)	349, 913, 1110, 2190, 2383
NmeAIII	GCCGAG	4 cut(s)	104, 356, 440, 2358
NmuCI	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 1916, 2142
NruI	TCGCGA	1 cut(s)	1050
NsbI	TGCGCA	1 cut(s)	1521
NsiI	ATGCAT	1 cut(s)	1573
NspI	RCATGY	2 cut(s)	97, 343
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	1583
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	1813
PdiI	GCCGGC	1 cut(s)	1155
PdmI	GAANNNNTTC	3 cut(s)	1451, 1906, 2180
PfeI	GAWTC	6 cut(s)	108, 387, 1394, 1441, 1447, 1543
PflMI	CCANNNNNTGG	2 cut(s)	715, 1209
PkrI	GCNGC	9 cut(s)	134, 384, 447, 794, 1019, 1159, 1188, 1863, 2109
PleI	GAGTC	4 cut(s)	371, 452, 554, 611
PluTI	GGCGCC	2 cut(s)	351, 2385
PmaCI	CACGTG	3 cut(s)	586, 610, 2091
PmlI	CACGTG	3 cut(s)	586, 610, 2091
PpsI	GAGTC	4 cut(s)	371, 452, 554, 611
Ppu21I	YACGTR	5 cut(s)	325, 586, 610, 1999, 2091
PpuMI	RGGWCCY	1 cut(s)	912
PscI	ACATGT	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	2229
Psp1406I	AACGTT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	912
Psp6I	CCWGG	9 cut(s)	48, 230, 597, 831, 1068, 1121, 1912, 2121, 2338
PspCI	CACGTG	3 cut(s)	586, 610, 2091
PspFI	CCCAGC	1 cut(s)	675
PspGI	CCWGG	9 cut(s)	48, 230, 597, 831, 1068, 1121, 1912, 2121, 2338
PspN4I	GGNNCC	5 cut(s)	349, 913, 1110, 2190, 2383
PspPI	GGNCC	7 cut(s)	431, 706, 735, 912, 1109, 1151, 1222
PspPPI	RGGWCCY	1 cut(s)	912
PstNI	CAGNNNCTG	1 cut(s)	1598
PsuI	RGATCY	6 cut(s)	285, 1400, 1514, 1559, 2042, 2373
RruI	TCGCGA	1 cut(s)	1050
RsaI	GTAC	7 cut(s)	35, 518, 596, 722, 1102, 1882, 1997
RsaNI	GTAC	7 cut(s)	34, 517, 595, 721, 1101, 1881, 1996
RseI	CAYNNNNRTG	5 cut(s)	92, 1257, 2115, 2165, 2203
SaqAI	TTAA	5 cut(s)	356, 1233, 1607, 1628, 2408
SatI	GCNGC	9 cut(s)	133, 383, 446, 793, 1018, 1158, 1187, 1862, 2108
Sau96I	GGNCC	7 cut(s)	431, 706, 735, 912, 1109, 1151, 1222
SchI	GAGTC	4 cut(s)	372, 452, 555, 611
SduI	GDGCHC	2 cut(s)	771, 1707
SfaNI	GCATC	7 cut(s)	934, 1249, 1290, 1494, 2092, 2119, 2392
SfoI	GGCGCC	2 cut(s)	349, 2383
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	735, 912, 1109
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	5 cut(s)	92, 1257, 2115, 2165, 2203
SmlI	CTYRAG	2 cut(s)	145, 818
SmoI	CTYRAG	2 cut(s)	145, 818
SspDI	GGCGCC	2 cut(s)	347, 2381
SspI	AATATT	1 cut(s)	1801
SspMI	CTAG	2 cut(s)	1638, 2046
StyI	CCWWGG	3 cut(s)	1971, 2034, 2064
TaaI	ACNGT	8 cut(s)	205, 226, 904, 1063, 1841, 1873, 1924, 1950
TaiI	ACGT	7 cut(s)	201, 327, 538, 588, 612, 2001, 2093
TaqI	TCGA	5 cut(s)	146, 315, 549, 973, 1503
TatI	WGTACW	2 cut(s)	720, 1880
TauI	GCSGC	5 cut(s)	135, 448, 795, 1020, 2110
TfiI	GAWTC	6 cut(s)	108, 387, 1394, 1441, 1447, 1543
Tru1I	TTAA	5 cut(s)	356, 1233, 1607, 1628, 2408
Tru9I	TTAA	5 cut(s)	356, 1233, 1607, 1628, 2408
TscAI	CASTG	2 cut(s)	793, 1878
TseFI	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 1916, 2142
TseI	GCWGC	4 cut(s)	382, 1157, 1186, 1861
Tsp45I	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 1916, 2142
TspDTI	ATGAA	7 cut(s)	883, 1362, 1446, 1519, 1782, 1811, 1955
TspGWI	ACGGA	3 cut(s)	361, 495, 534
TspRI	CASTG	2 cut(s)	793, 1878
Van91I	CCANNNNNTGG	2 cut(s)	715, 1209
VpaK11BI	GGWCC	3 cut(s)	735, 912, 1109
XapI	RAATTY	4 cut(s)	802, 1465, 1728, 1831
XceI	RCATGY	2 cut(s)	97, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1119
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	3 cut(s)	1451, 1906, 2180
XspI	CTAG	2 cut(s)	1638, 2046
Zsp2I	ATGCAT	1 cut(s)	1573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.