Rmu_sc0002105.1_g000010

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002105.1
Physical Location & Seq
Forward (+)
46913 .. 49463
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002105.1_g000010.1.cds

Sequence Viewer

Length: 1215 bp
atggggaatgaggatcaccatgaatctccaaccccaacaaatgaaggtgagagttctaaagaacatattatcctgcatggtgagctagatttatggattatagaagctaaatctcttccaaatatggatttaccttcagaaagaatgagaaagtgttttaccatgtttggaacttgctctgctccttttggaaatcggtctactactaaagctctttctggaaaacggcctgcagctattacaagtgacccttatgtttctgtttgcctagcaggagctactgtagctcagactagagtaatttcaaatagtgaaaatccctcatgggaagaacatttttgtgtgcctgttgctcaccctattatgaaggtggagtttcatgttaaggataatgatgttcttggagctgaacttattggagtagttgagatatctgttgataaaatcatttcgggaaatacaattaatgattggtttcccatcattggtaatctcggaaattgcttgaaaccttttcctgaattgcatgtttctgttcagtttaagccagttgaaaacaaccctctatataagaatggtgttggtgtcgggccagaatataaaggagttcctaatacatattttccacttcgcaagggagggagtgtcactttatatcaagatgctcatgttgtgggaactctttttacgcatcatcagaagtgtgtgattcttgacacagcttctgggagtaacaggaaaataactgctttcattggtggtcttgatttatgtgatggccgatatgatactcctgagcatagactatttcgtgaacttgacacaatctttgaaaatgatattcataaccctacatttcctacgaacacttatggcccaagagaaccttggcatgatttacactgtaaagttgagggtcctgctgcatatgatatactaacaaattttgagcaaagatggaaaaaagcgaaaaagcgtgacttcaaattgaaaaaagtcactaataagcatgatgatgccttgataaggttagatcgcgtctcatggatagtcactccaacttctgatcataatggtgatgaaaaagtgcgtgttagcaatgaagaagatcgtgaaaactggcatgtacagatattcaggtcaatagattcaggctctgtgaaggggtttccaaaaggtgtccaagatgctgaggttcaggttagaactagttag

Protein Analysis

404

Amino Acids

45.31

Weight (kDa)

6.14

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AccII CGCG 1 cut(s) 1038
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 1 cut(s) 943
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 1128
AfiI CCNNNNNNNGG 2 cut(s) 485, 1026
AgsI TTSAA 6 cut(s) 306, 508, 554, 833, 985, 991
AhlI ACTAGT 1 cut(s) 1208
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 8 cut(s) 85, 107, 212, 236, 278, 287, 407, 722
AluI AGCT 8 cut(s) 85, 107, 212, 236, 278, 287, 407, 722
Alw26I GTCTC 1 cut(s) 1045
AlwI GGATC 1 cut(s) 21
AlwNI CAGNNNCTG 2 cut(s) 725, 1157
AoxI GGCC 4 cut(s) 227, 590, 778, 874
ApeKI GCWGC 2 cut(s) 233, 923
ApoI RAATTY 1 cut(s) 943
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AseI ATTAAT 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 590, 875, 917
AsuHPI GGTGA 5 cut(s) 8, 59, 92, 347, 1088
AvaII GGWCC 1 cut(s) 917
BbvCI CCTCAGC 1 cut(s) 1191
BbvI GCAGC 2 cut(s) 245, 910
BccI CCATC 3 cut(s) 488, 770, 951
BceAI ACGGC 1 cut(s) 242
BclI TGATCA 1 cut(s) 1066
BcoDI GTCTC 1 cut(s) 1045
BcuI ACTAGT 1 cut(s) 1208
BfaI CTAG 4 cut(s) 86, 269, 294, 1209
BfmI CTRYAG 2 cut(s) 231, 282
BisI GCNGC 2 cut(s) 234, 924
BlsI GCNGC 2 cut(s) 235, 925
Bme18I GGWCC 1 cut(s) 917
BmgT120I GGNCC 3 cut(s) 590, 875, 917
BmiI GGNNCC 1 cut(s) 918
BmsI GCATC 4 cut(s) 652, 700, 1006, 1177
Bpu10I CCTNAGC 2 cut(s) 795, 1191
BsaJI CCNNGG 1 cut(s) 887
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 1026
Bse1I ACTGG 2 cut(s) 548, 1124
Bse3DI GCAATG 1 cut(s) 1105
BseDI CCNNGG 1 cut(s) 887
BseLI CCNNNNNNNGG 2 cut(s) 485, 1026
BseMI GCAATG 1 cut(s) 1105
BseMII CTCAG 3 cut(s) 302, 786, 1182
BseNI ACTGG 2 cut(s) 548, 1124
BseXI GCAGC 2 cut(s) 245, 910
Bsh1236I CGCG 1 cut(s) 1038
BshFI GGCC 4 cut(s) 229, 592, 780, 876
BslI CCNNNNNNNGG 2 cut(s) 485, 1026
BsmAI GTCTC 1 cut(s) 1045
BsmBI CGTCTC 1 cut(s) 1045
BsnI GGCC 4 cut(s) 229, 592, 780, 876
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 4 cut(s) 13, 1033, 1066, 1108
BspANI GGCC 4 cut(s) 229, 592, 780, 876
BspCNI CTCAG 3 cut(s) 301, 787, 1183
BspFNI CGCG 1 cut(s) 1038
BspLI GGNNCC 1 cut(s) 918
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 1105
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 2 cut(s) 548, 1124
BssECI CCNNGG 1 cut(s) 887
BssMI GATC 4 cut(s) 13, 1033, 1066, 1108
BssT1I CCWWGG 1 cut(s) 887
Bst4CI ACNGT 2 cut(s) 283, 905
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 1126
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 288, 795, 1191
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstFNI CGCG 1 cut(s) 1038
BstKTI GATC 4 cut(s) 16, 1036, 1069, 1111
BstMAI GTCTC 1 cut(s) 1045
BstMBI GATC 4 cut(s) 13, 1033, 1066, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 82, 284
BstNSI RCATGY 2 cut(s) 530, 1127
BstSFI CTRYAG 2 cut(s) 231, 282
BstUI CGCG 1 cut(s) 1038
BstV1I GCAGC 2 cut(s) 245, 910
BsuRI GGCC 4 cut(s) 229, 592, 780, 876
BtsIMutI CAGTG 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 725, 1157
Cfr13I GGNCC 3 cut(s) 590, 875, 917
CseI GACGC 1 cut(s) 1027
Csp6I GTAC 1 cut(s) 1127
CviQI GTAC 1 cut(s) 1127
DdeI CTNAG 3 cut(s) 288, 795, 1191
DpnI GATC 4 cut(s) 15, 1035, 1068, 1110
DpnII GATC 4 cut(s) 13, 1033, 1066, 1108
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 887
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 917
Eco57I CTGAAG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoO109I RGGNCCY 1 cut(s) 917
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 887
Esp3I CGTCTC 1 cut(s) 1045
FalI AAGNNNNNCTT 6 cut(s) 235, 267, 871, 903, 965, 997
FauNDI CATATG 1 cut(s) 928
FbaI TGATCA 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 234, 924
Fsp4HI GCNGC 2 cut(s) 234, 924
FspBI CTAG 4 cut(s) 86, 269, 294, 1209
GluI GCNGC 2 cut(s) 234, 924
HaeIII GGCC 4 cut(s) 229, 592, 780, 876
HgaI GACGC 1 cut(s) 1027
HinfI GANTC 3 cut(s) 23, 709, 1148
HphI GGTGA 5 cut(s) 8, 59, 92, 347, 1088
Hpy166II GTNNAC 2 cut(s) 201, 815
Hpy188I TCNGA 5 cut(s) 139, 291, 497, 699, 1066
Hpy188III TCNNGA 9 cut(s) 219, 453, 518, 659, 713, 764, 794, 812, 1112
Hpy8I GTNNAC 2 cut(s) 201, 815
HpyAV CCTTC 4 cut(s) 38, 144, 361, 1156
HpyCH4III ACNGT 2 cut(s) 283, 905
HpyCH4V TGCA 4 cut(s) 76, 233, 526, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 284
HpyF3I CTNAG 3 cut(s) 288, 795, 1191
Ksp22I TGATCA 1 cut(s) 1066
Kzo9I GATC 4 cut(s) 13, 1033, 1066, 1108
LmnI GCTCC 3 cut(s) 187, 275, 404
Lsp1109I GCAGC 2 cut(s) 245, 910
LweI GCATC 4 cut(s) 652, 700, 1006, 1177
MaeI CTAG 4 cut(s) 86, 269, 294, 1209
MaeIII GTNAC 6 cut(s) 245, 646, 731, 977, 997, 1051
MalI GATC 4 cut(s) 15, 1035, 1068, 1110
MboI GATC 4 cut(s) 13, 1033, 1066, 1108
MboII GAAGA 4 cut(s) 107, 341, 1115, 1118
MluCI AATT 6 cut(s) 300, 462, 499, 521, 943, 986
MmeI TCCRAC 2 cut(s) 53, 1082
MnlI CCTC 6 cut(s) 4, 331, 573, 632, 907, 1186
MseI TTAA 3 cut(s) 384, 465, 543
MslI CAYNNNNRTG 3 cut(s) 339, 1014, 1074
MvnI CGCG 1 cut(s) 1038
MwoI GCNNNNNNNGC 2 cut(s) 82, 284
NdeI CATATG 1 cut(s) 928
NdeII GATC 4 cut(s) 13, 1033, 1066, 1108
NlaIV GGNNCC 1 cut(s) 918
NmuCI GTSAC 5 cut(s) 245, 646, 977, 997, 1051
NspI RCATGY 2 cut(s) 530, 1127
PfeI GAWTC 3 cut(s) 23, 709, 1148
PkrI GCNGC 2 cut(s) 235, 925
PpuMI RGGWCCY 1 cut(s) 917
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 917
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 3 cut(s) 590, 875, 917
PspPPI RGGWCCY 1 cut(s) 917
PsrI GAACNNNNNNTAC 2 cut(s) 670, 702
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 2 cut(s) 725, 1157
RsaI GTAC 1 cut(s) 1128
RsaNI GTAC 1 cut(s) 1127
RseI CAYNNNNRTG 3 cut(s) 339, 1014, 1074
SaqAI TTAA 3 cut(s) 384, 465, 543
SatI GCNGC 2 cut(s) 234, 924
Sau3AI GATC 4 cut(s) 13, 1033, 1066, 1108
Sau96I GGNCC 3 cut(s) 590, 875, 917
SfaNI GCATC 4 cut(s) 652, 700, 1006, 1177
SfcI CTRYAG 2 cut(s) 231, 282
SinI GGWCC 1 cut(s) 917
SmiMI CAYNNNNRTG 3 cut(s) 339, 1014, 1074
SpeI ACTAGT 1 cut(s) 1208
Sse9I AATT 6 cut(s) 300, 462, 499, 521, 943, 986
SspMI CTAG 4 cut(s) 86, 269, 294, 1209
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 283, 905
TaqII GACCGA 1 cut(s) 186
TasI AATT 6 cut(s) 300, 462, 499, 521, 943, 986
TatI WGTACW 1 cut(s) 1126
TfiI GAWTC 3 cut(s) 23, 709, 1148
Tru1I TTAA 3 cut(s) 384, 465, 543
Tru9I TTAA 3 cut(s) 384, 465, 543
TscAI CASTG 1 cut(s) 908
TseFI GTSAC 5 cut(s) 245, 646, 977, 997, 1051
TseI GCWGC 2 cut(s) 233, 923
Tsp45I GTSAC 5 cut(s) 245, 646, 977, 997, 1051
TspDTI ATGAA 8 cut(s) 36, 57, 368, 380, 742, 833, 1095, 1116
TspRI CASTG 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 917
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 1 cut(s) 943
XceI RCATGY 2 cut(s) 530, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 4 cut(s) 86, 269, 294, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.