Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

61478865 .. 61484876

Gene Structure 6012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGCGGAAGATAACTCAGAACCATTGGTGGTGTACCTTCACGGCAACCTGGATTTGAAAATCATAGAGGCGCGATATTTGCCCAACATGGACATGCTCTCCGAGCGATTCCGGCGATTGTTCTCGGCCTGCCGCAAGCCATTCTCGAGCGCTAAACAGCACCGCAGTCACCATAAAATCATCACCAGCGACCCTTACGTCACGGTCTGCCTCGCCGGAGCTACCGTCGCCCGGACGCGCGTGATCTCCAACTCCCAGAACCCGGAATGGAAGGAGCATTTCAAGATCCCTCTCGCCCACCCCGTCTCCCAAGTCGAGTTCTACGTCAAAGACAACGACATGTTCGGCGCCGATTTAATCGGCGTCGCGTCCGTCCCGGCGCAGCGAATCCTCTCCGGCGAGACGATCAGCGATTGGTTTCCGATAATCGGGCCGTTGGGGAAGCCGCCGAAACCGGACTCGGCGGTTAGGTTGGAAATGAGGTTCACGAAATGCGAGGACAATCCGTTGTATCAGTACGGAATATCCCACGAACGTTTCGGGGGAGTCGAGAATTGTTACTTTCCGGCACGGCGAGGAGGTCACGTGACGCTGTACCAGGACGCGCACGTGCCGGACTCGGTGATGGAGGACATAGAATTGGACGACGGGGTTCAGTTTGAGCATGGGAAGTGCTGGGAGGATATATGTCACGCAATCTTGGAGGCCCATCATTTGGTGTACATTGTGGGCTGGTCCATTTATCACAAGGTCAAGGTGGTCAGAGAGCCCAGTAAGCCCTTGCCCAGCGGCGGCAATTTGAATTTGGGGGAGTTGCTCAAGTATAAATCCCAGGAAGGATTGAGAGTTTTGTTGCTGGTTTGGGATGATAAGACTTCTCACAGCAAGTTCTTCATCAATACGACCGGAGTGATGCAAACGCATGATGAAGAAACCAGGAAGTTTTTTAAGCATTCTTCGGTGTCATGCGTGCTGTCACCGCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGTTGTTGGGACCTTGTTTACGCATCATCAAAAGTGTGTGATTGTGGATACACAAGCGTCTGGAAACAATCGAAAGATTACTGCATTTATAGGAGGTCTGGACCTCTGTGATGGCCGCTATGATACTCCTGAGCATCGGCTGTTTCGCGATGTTGACACAGTTTTCCAGGGTGATTTCCATAATCCCACATTGGCTGGTACAAAGGGTCCAAGACAACCCTGGCATGATCTACATTGCAAAATTGAAGGGCCGGCTGCATACGATGTGCTAACTAATTTTGAGCAGCGTTGGAAAAGAGCCACAAAATGGTCAGAGTTGGGCCAACGCTTTAAAAGAGTGTCGCGTTGGCACGACGATGCTTTGATCAAGTTGGAGCGCATCTCATGGATTCTTAGTCCCGCACCAAAAAGTTCCAATCATGATCCTGTATTACGGGTTTCAGATGAAGATGATCCTCAAAACTGGCGTGTTCAGATATTCCGATCCATAGATTCTGGATCTGTGAAAGGATTTCCCAAAGATGTCTATGAAGCTGAGAATCAGAATCTTTTCTGCGCCAAAAATTTGGTTATAGACAAGAGCATCCAAACAGCATATATCGAAGCAATCAGATCTGCGCAACACTTCATATACATTGAGAATCAGTATTTCCTCGGATCATCTTATGCATGGCCAACTTACAAAGAAGCAGGTGCTGACAATTTAATTCCAATGGAGTTGGCATTAAAGATTGCTAGTAAGATACGAGCCAAAGAGAGATTTGCAGTTTATGTCGTGATACCAATGTGGCCAGAAGGTGTGCCCTCTTCTGCTCCTGTGCAACAAATTCTCTTCTGGCAGGGACAAACAATGCAAATGATGTATGAAATCATAGCAAAAGAGCTGAAATCCATGAATATTGCGAATGCTCATCCGCAGGACTACCTAAATTTCTACTGTCTTGGTAATCGGGAAAAGCTGCCTGCCACAGTGTCCTGTACAAATAACCAAGCTCCCAGAACTGGTTCTCCAAGTCACACGGTAATCATAGCATACAAAACTTCTTTCTATCACCGAAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

694

Amino Acids

79.17

Weight (kDa)

7.89

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	16 - 141	5.2e-18	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1700
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	1638
Acc36I	ACCTGC	1 cut(s)	1700
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	2 cut(s)	715, 1326
AccII	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
AclI	AACGTT	1 cut(s)	535
AclWI	GGATC	6 cut(s)	280, 1436, 1466, 1497, 1525, 1684
AcoI	YGGCCR	3 cut(s)	1132, 1691, 1808
AcsI	RAATTY	4 cut(s)	802, 1582, 1845, 1948
AcvI	CACGTG	2 cut(s)	586, 610
AcyI	GRCGYC	2 cut(s)	348, 363
AfaI	GTAC	6 cut(s)	35, 518, 596, 722, 1219, 1999
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	7 cut(s)	231, 262, 428, 715, 791, 1326, 2021
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	58, 283, 802, 1012, 1265
AjnI	CCWGG	6 cut(s)	48, 597, 831, 935, 1185, 1238
AloI	GAACNNNNNNTCC	4 cut(s)	467, 499, 2011, 2043
AluBI	AGCT	6 cut(s)	221, 1000, 1553, 1903, 1978, 2012
AluI	AGCT	6 cut(s)	221, 1000, 1553, 1903, 1978, 2012
Alw26I	GTCTC	2 cut(s)	310, 395
AlwI	GGATC	6 cut(s)	280, 1436, 1466, 1497, 1525, 1684
AlwNI	CAGNNNCTG	1 cut(s)	1715
Ama87I	CYCGRG	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	151
AoxI	GGCC	8 cut(s)	126, 431, 705, 1132, 1268, 1339, 1691, 1808
ApeKI	GCWGC	4 cut(s)	382, 1274, 1303, 1978
ApoI	RAATTY	4 cut(s)	802, 1582, 1845, 1948
Asp700I	GAANNNNTTC	2 cut(s)	1568, 2023
AspLEI	GCGC	9 cut(s)	73, 152, 240, 350, 382, 607, 1398, 1577, 1639
AspS9I	GGNCC	8 cut(s)	431, 706, 735, 1029, 1120, 1226, 1268, 1339
AsuC2I	CCSGG	3 cut(s)	232, 263, 377
AsuHPI	GGTGA	6 cut(s)	161, 175, 634, 969, 1202, 2063
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	4 cut(s)	735, 1029, 1120, 1226
BaeGI	GKGCMC	1 cut(s)	1824
BaeI	ACNNNNGTAYC	2 cut(s)	1790, 1823
BalI	TGGCCA	2 cut(s)	1693, 1810
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	771
BbrPI	CACGTG	2 cut(s)	586, 610
BbvI	GCAGC	4 cut(s)	394, 1261, 1315, 1965
BccI	CCATC	3 cut(s)	619, 717, 1124
BceAI	ACGGC	3 cut(s)	58, 418, 587
BciT130I	CCWGG	6 cut(s)	50, 599, 833, 937, 1187, 1240
BciVI	GTATCC	1 cut(s)	1060
BclI	TGATCA	1 cut(s)	1383
BcnI	CCSGG	3 cut(s)	232, 263, 377
BcoDI	GTCTC	2 cut(s)	310, 395
BfaI	CTAG	1 cut(s)	1755
BfoI	RGCGCY	2 cut(s)	153, 351
BfuAI	ACCTGC	1 cut(s)	1700
BfuI	GTATCC	1 cut(s)	1060
BglII	AGATCT	1 cut(s)	1631
BisI	GCNGC	9 cut(s)	133, 383, 446, 790, 793, 1135, 1275, 1304, 1979
BlpI	GCTNAGC	1 cut(s)	1001
BlsI	GCNGC	9 cut(s)	134, 384, 447, 791, 794, 1136, 1276, 1305, 1980
Bme1390I	CCNGG	9 cut(s)	50, 232, 263, 377, 599, 833, 937, 1187, 1240
Bme18I	GGWCC	4 cut(s)	735, 1029, 1120, 1226
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	8 cut(s)	431, 706, 735, 1029, 1120, 1226, 1268, 1339
BmiI	GGNNCC	3 cut(s)	349, 1030, 1227
BmrFI	CCNGG	9 cut(s)	50, 232, 263, 377, 599, 833, 937, 1187, 1240
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	6 cut(s)	903, 1051, 1162, 1366, 1407, 1611
BmuI	ACTGGG	1 cut(s)	765
BplI	GAGNNNNNCTC	2 cut(s)	1385, 1417
Bpu10I	CCTNAGC	1 cut(s)	1149
Bpu1102I	GCTNAGC	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	3 cut(s)	232, 263, 377
BsaAI	YACGTR	2 cut(s)	586, 610
BsaHI	GRCGYC	2 cut(s)	348, 363
BsaJI	CCNNGG	4 cut(s)	831, 1186, 1238, 1672
BsaWI	WCCGGW	2 cut(s)	454, 905
Bsc4I	CCNNNNNNNGG	7 cut(s)	231, 262, 428, 715, 791, 1326, 2021
Bse118I	RCCGGY	1 cut(s)	1270
Bse1I	ACTGG	3 cut(s)	771, 1487, 2026
Bse3DI	GCAATG	1 cut(s)	1252
BseBI	CCWGG	6 cut(s)	50, 599, 833, 937, 1187, 1240
BseDI	CCNNGG	4 cut(s)	831, 1186, 1238, 1672
BseGI	GGATG	3 cut(s)	871, 1602, 1930
BseLI	CCNNNNNNNGG	7 cut(s)	231, 262, 428, 715, 791, 1326, 2021
BseMI	GCAATG	1 cut(s)	1252
BseMII	CTCAG	3 cut(s)	30, 1140, 1545
BseNI	ACTGG	3 cut(s)	771, 1487, 2026
BseRI	GAGGAG	1 cut(s)	591
BseSI	GKGCMC	1 cut(s)	1824
BseXI	GCAGC	4 cut(s)	394, 1261, 1315, 1965
BseYI	CCCAGC	2 cut(s)	675, 785
Bsh1236I	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	8 cut(s)	128, 433, 707, 1134, 1270, 1341, 1693, 1810
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	906
BsiHKCI	CYCGRG	1 cut(s)	145
BslFI	GGGAC	4 cut(s)	359, 1042, 1401, 1875
BslI	CCNNNNNNNGG	7 cut(s)	231, 262, 428, 715, 791, 1326, 2021
BsmAI	GTCTC	2 cut(s)	310, 395
BsmBI	CGTCTC	2 cut(s)	310, 395
BsmFI	GGGAC	4 cut(s)	359, 1042, 1401, 1875
BsmI	GAATGC	2 cut(s)	952, 1930
BsnI	GGCC	8 cut(s)	128, 433, 707, 1134, 1270, 1341, 1693, 1810
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	771, 1824
Bsp1407I	TGTACA	2 cut(s)	720, 1997
Bsp1720I	GCTNAGC	1 cut(s)	1001
Bsp68I	TCGCGA	1 cut(s)	1167
BspANI	GGCC	8 cut(s)	128, 433, 707, 1134, 1270, 1341, 1693, 1810
BspCNI	CTCAG	3 cut(s)	29, 1141, 1546
BspFNI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
BspHI	TCATGA	1 cut(s)	1438
BspLI	GGNNCC	3 cut(s)	349, 1030, 1227
BspMI	ACCTGC	1 cut(s)	1700
BspPI	GGATC	6 cut(s)	280, 1436, 1466, 1497, 1525, 1684
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	1252
BsrFI	RCCGGY	1 cut(s)	1270
BsrGI	TGTACA	2 cut(s)	720, 1997
BsrI	ACTGG	3 cut(s)	771, 1487, 2026
BssAI	RCCGGY	1 cut(s)	1270
BssECI	CCNNGG	4 cut(s)	831, 1186, 1238, 1672
BssNI	GRCGYC	2 cut(s)	348, 363
Bst2UI	CCWGG	6 cut(s)	50, 599, 833, 937, 1187, 1240
Bst4CI	ACNGT	6 cut(s)	205, 226, 1180, 1958, 1990, 2041
Bst6I	CTCTTC	2 cut(s)	1831, 1856
BstACI	GRCGYC	2 cut(s)	348, 363
BstAUI	TGTACA	2 cut(s)	720, 1997
BstBAI	YACGTR	2 cut(s)	586, 610
BstC8I	GCNNGC	6 cut(s)	130, 137, 971, 991, 1272, 1983
BstDEI	CTNAG	5 cut(s)	16, 1001, 1149, 1412, 1554
BstF5I	GGATG	3 cut(s)	871, 1602, 1930
BstFNI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
BstH2I	RGCGCY	2 cut(s)	153, 351
BstHHI	GCGC	9 cut(s)	73, 152, 240, 350, 382, 607, 1398, 1577, 1639
BstMAI	GTCTC	2 cut(s)	310, 395
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 979
BstNI	CCWGG	6 cut(s)	50, 599, 833, 937, 1187, 1240
BstNSI	RCATGY	2 cut(s)	97, 343
BstSCI	CCNGG	9 cut(s)	48, 230, 261, 375, 597, 831, 935, 1185, 1238
BstSLI	GKGCMC	1 cut(s)	1824
BstUI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
BstV1I	GCAGC	4 cut(s)	394, 1261, 1315, 1965
BstX2I	RGATCY	3 cut(s)	285, 1517, 1631
BstXI	CCANNNNNNTGG	1 cut(s)	1585
BstYI	RGATCY	3 cut(s)	285, 1517, 1631
BsuI	GTATCC	1 cut(s)	1060
BsuRI	GGCC	8 cut(s)	128, 433, 707, 1134, 1270, 1341, 1693, 1810
BtgZI	GCGATG	1 cut(s)	1182
BtsCI	GGATG	3 cut(s)	871, 1602, 1930
BtsIMutI	CAGTG	1 cut(s)	1995
BtuMI	TCGCGA	1 cut(s)	1167
BveI	ACCTGC	1 cut(s)	1700
Cac8I	GCNNGC	6 cut(s)	130, 137, 971, 991, 1272, 1983
CaiI	CAGNNNCTG	1 cut(s)	1715
CciI	TCATGA	1 cut(s)	1438
CfoI	GCGC	9 cut(s)	73, 152, 240, 350, 382, 607, 1398, 1577, 1639
Cfr10I	RCCGGY	1 cut(s)	1270
Cfr13I	GGNCC	8 cut(s)	431, 706, 735, 1029, 1120, 1226, 1268, 1339
CseI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1065
Csp6I	GTAC	6 cut(s)	34, 517, 595, 721, 1218, 1998
CviQI	GTAC	6 cut(s)	34, 517, 595, 721, 1218, 1998
DdeI	CTNAG	5 cut(s)	16, 1001, 1149, 1412, 1554
DinI	GGCGCC	1 cut(s)	349
DraI	TTTAAA	1 cut(s)	1351
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	3 cut(s)	1132, 1691, 1808
Eam1104I	CTCTTC	2 cut(s)	1831, 1856
EarI	CTCTTC	2 cut(s)	1831, 1856
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	4 cut(s)	735, 1029, 1120, 1226
Eco47III	AGCGCT	1 cut(s)	151
Eco72I	CACGTG	2 cut(s)	586, 610
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	1029
EcoRII	CCWGG	6 cut(s)	48, 597, 831, 935, 1185, 1238
EcoT22I	ATGCAT	1 cut(s)	1690
EcoT38I	GRGCYC	1 cut(s)	771
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
Esp3I	CGTCTC	2 cut(s)	310, 395
FaqI	GGGAC	4 cut(s)	359, 1042, 1401, 1875
FauI	CCCGC	1 cut(s)	1426
FbaI	TGATCA	1 cut(s)	1383
Fnu4HI	GCNGC	9 cut(s)	133, 383, 446, 790, 793, 1135, 1275, 1304, 1979
FokI	GGATG	3 cut(s)	878, 1589, 1917
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	9 cut(s)	133, 383, 446, 790, 793, 1135, 1275, 1304, 1979
FspBI	CTAG	1 cut(s)	1755
FspI	TGCGCA	1 cut(s)	1638
GlaI	GCGC	9 cut(s)	72, 151, 239, 349, 381, 606, 1397, 1576, 1638
GluI	GCNGC	9 cut(s)	133, 383, 446, 790, 793, 1135, 1275, 1304, 1979
GsaI	CCCAGC	2 cut(s)	679, 789
HaeII	RGCGCY	2 cut(s)	153, 351
HaeIII	GGCC	8 cut(s)	128, 433, 707, 1134, 1270, 1341, 1693, 1810
HgaI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1065
HhaI	GCGC	9 cut(s)	73, 152, 240, 350, 382, 607, 1398, 1577, 1639
Hin1I	GRCGYC	2 cut(s)	348, 363
Hin6I	GCGC	9 cut(s)	71, 150, 238, 348, 380, 605, 1396, 1575, 1637
HinP1I	GCGC	9 cut(s)	71, 150, 238, 348, 380, 605, 1396, 1575, 1637
HincII	GTYRAC	1 cut(s)	1174
HindII	GTYRAC	1 cut(s)	1174
HindIII	AAGCTT	1 cut(s)	998
HphI	GGTGA	6 cut(s)	161, 175, 634, 969, 1202, 2063
Hpy166II	GTNNAC	5 cut(s)	34, 486, 721, 1038, 1174
Hpy8I	GTNNAC	5 cut(s)	34, 486, 721, 1038, 1174
Hpy99I	CGWCG	4 cut(s)	230, 368, 650, 1376
HpyAV	CCTTC	5 cut(s)	47, 265, 830, 1259, 1808
HpyCH4III	ACNGT	6 cut(s)	205, 226, 1180, 1958, 1990, 2041
HpyCH4IV	ACGT	5 cut(s)	198, 324, 535, 585, 609
HpyCH4V	TGCA	8 cut(s)	916, 1103, 1257, 1277, 1688, 1784, 1840, 1873
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 979
HpyF3I	CTNAG	5 cut(s)	16, 1001, 1149, 1412, 1554
HpySE526I	ACGT	5 cut(s)	198, 324, 535, 585, 609
Hsp92I	GRCGYC	2 cut(s)	348, 363
HspAI	GCGC	9 cut(s)	71, 150, 238, 348, 380, 605, 1396, 1575, 1637
KasI	GGCGCC	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	1270
KroNI	GCCGGC	1 cut(s)	1272
Ksp22I	TGATCA	1 cut(s)	1383
LmnI	GCTCC	5 cut(s)	218, 274, 1393, 1837, 2017
Lsp1109I	GCAGC	4 cut(s)	394, 1261, 1315, 1965
LweI	GCATC	6 cut(s)	903, 1051, 1162, 1366, 1407, 1611
MaeI	CTAG	1 cut(s)	1755
MaeII	ACGT	5 cut(s)	198, 324, 535, 585, 609
MaeIII	GTNAC	8 cut(s)	167, 199, 557, 581, 586, 689, 975, 2033
MboII	GAAGA	7 cut(s)	20, 883, 941, 948, 1478, 1818, 1843
MflI	RGATCY	3 cut(s)	285, 1517, 1631
MhlI	GDGCHC	2 cut(s)	771, 1824
MlsI	TGGCCA	2 cut(s)	1693, 1810
MluNI	TGGCCA	2 cut(s)	1693, 1810
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	3 cut(s)	452, 555, 611
MmeI	TCCRAC	4 cut(s)	273, 453, 1289, 1371
Mox20I	TGGCCA	2 cut(s)	1693, 1810
Mph1103I	ATGCAT	1 cut(s)	1690
MroNI	GCCGGC	1 cut(s)	1270
MroXI	GAANNNNTTC	2 cut(s)	1568, 2023
MscI	TGGCCA	2 cut(s)	1693, 1810
MseI	TTAA	5 cut(s)	356, 948, 1350, 1724, 1745
MslI	CAYNNNNRTG	2 cut(s)	92, 1374
Msp20I	TGGCCA	2 cut(s)	1693, 1810
MspA1I	CMGCKG	1 cut(s)	789
MspR9I	CCNGG	9 cut(s)	50, 232, 263, 377, 599, 833, 937, 1187, 1240
Mva1269I	GAATGC	2 cut(s)	952, 1930
MvaI	CCWGG	6 cut(s)	50, 599, 833, 937, 1187, 1240
MvnI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1167, 1363
MwoI	GCNNNNNNNGC	6 cut(s)	79, 103, 112, 227, 775, 979
NaeI	GCCGGC	1 cut(s)	1272
NarI	GGCGCC	1 cut(s)	348
NciI	CCSGG	3 cut(s)	232, 263, 377
NgoMIV	GCCGGC	1 cut(s)	1270
NlaIV	GGNNCC	3 cut(s)	349, 1030, 1227
NmeAIII	GCCGAG	2 cut(s)	104, 440
NmuCI	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 975, 2033
NruI	TCGCGA	1 cut(s)	1167
NsbI	TGCGCA	1 cut(s)	1638
NsiI	ATGCAT	1 cut(s)	1690
NspI	RCATGY	2 cut(s)	97, 343
PaeR7I	CTCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	1438
PaqCI	CACCTGC	1 cut(s)	1700
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 321, 546
PctI	GAATGC	2 cut(s)	952, 1930
PdiI	GCCGGC	1 cut(s)	1272
PdmI	GAANNNNTTC	2 cut(s)	1568, 2023
PfeI	GAWTC	7 cut(s)	108, 387, 1408, 1511, 1558, 1564, 1660
PflMI	CCANNNNNTGG	2 cut(s)	715, 1326
PkrI	GCNGC	9 cut(s)	134, 384, 447, 791, 794, 1136, 1276, 1305, 1980
PleI	GAGTC	3 cut(s)	452, 554, 611
PluTI	GGCGCC	1 cut(s)	351
PmaCI	CACGTG	2 cut(s)	586, 610
PmlI	CACGTG	2 cut(s)	586, 610
PpsI	GAGTC	3 cut(s)	452, 554, 611
Ppu21I	YACGTR	2 cut(s)	586, 610
PpuMI	RGGWCCY	1 cut(s)	1029
PscI	ACATGT	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	1029
Psp6I	CCWGG	6 cut(s)	48, 597, 831, 935, 1185, 1238
PspCI	CACGTG	2 cut(s)	586, 610
PspFI	CCCAGC	2 cut(s)	675, 785
PspGI	CCWGG	6 cut(s)	48, 597, 831, 935, 1185, 1238
PspN4I	GGNNCC	3 cut(s)	349, 1030, 1227
PspPI	GGNCC	8 cut(s)	431, 706, 735, 1029, 1120, 1226, 1268, 1339
PspPPI	RGGWCCY	1 cut(s)	1029
PstNI	CAGNNNCTG	1 cut(s)	1715
PsuI	RGATCY	3 cut(s)	285, 1517, 1631
RruI	TCGCGA	1 cut(s)	1167
RsaI	GTAC	6 cut(s)	35, 518, 596, 722, 1219, 1999
RsaNI	GTAC	6 cut(s)	34, 517, 595, 721, 1218, 1998
RseI	CAYNNNNRTG	2 cut(s)	92, 1374
SaqAI	TTAA	5 cut(s)	356, 948, 1350, 1724, 1745
SatI	GCNGC	9 cut(s)	133, 383, 446, 790, 793, 1135, 1275, 1304, 1979
Sau96I	GGNCC	8 cut(s)	431, 706, 735, 1029, 1120, 1226, 1268, 1339
SchI	GAGTC	3 cut(s)	452, 555, 611
ScrFI	CCNGG	9 cut(s)	50, 232, 263, 377, 599, 833, 937, 1187, 1240
SduI	GDGCHC	2 cut(s)	771, 1824
SfaNI	GCATC	6 cut(s)	903, 1051, 1162, 1366, 1407, 1611
SfoI	GGCGCC	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	4 cut(s)	735, 1029, 1120, 1226
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	92, 1374
SmlI	CTYRAG	2 cut(s)	145, 818
SmoI	CTYRAG	2 cut(s)	145, 818
SspDI	GGCGCC	1 cut(s)	347
SspI	AATATT	1 cut(s)	1918
SspMI	CTAG	1 cut(s)	1755
StyD4I	CCNGG	9 cut(s)	48, 230, 261, 375, 597, 831, 935, 1185, 1238
TaaI	ACNGT	6 cut(s)	205, 226, 1180, 1958, 1990, 2041
TaiI	ACGT	5 cut(s)	201, 327, 538, 588, 612
TaqI	TCGA	5 cut(s)	146, 315, 549, 1090, 1620
TatI	WGTACW	2 cut(s)	720, 1997
TauI	GCSGC	5 cut(s)	135, 448, 792, 795, 1137
TfiI	GAWTC	7 cut(s)	108, 387, 1408, 1511, 1558, 1564, 1660
Tru1I	TTAA	5 cut(s)	356, 948, 1350, 1724, 1745
Tru9I	TTAA	5 cut(s)	356, 948, 1350, 1724, 1745
TscAI	CASTG	1 cut(s)	1995
TseFI	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 975, 2033
TseI	GCWGC	4 cut(s)	382, 1274, 1303, 1978
Tsp45I	GTSAC	7 cut(s)	167, 199, 581, 586, 689, 975, 2033
TspDTI	ATGAA	7 cut(s)	883, 942, 1479, 1563, 1636, 1899, 1928
TspGWI	ACGGA	3 cut(s)	361, 495, 534
TspRI	CASTG	1 cut(s)	1995
Van91I	CCANNNNNTGG	2 cut(s)	715, 1326
VpaK11BI	GGWCC	4 cut(s)	735, 1029, 1120, 1226
XapI	RAATTY	4 cut(s)	802, 1582, 1845, 1948
XceI	RCATGY	2 cut(s)	97, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1236
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	2 cut(s)	1568, 2023
XspI	CTAG	1 cut(s)	1755
Zsp2I	ATGCAT	1 cut(s)	1690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.