Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

62176677 .. 62180309

Gene Structure 3633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGGCGGAAGATAAGTCAGAACCATTGGTGGTGTACCTTCACGGCAACCTGGATTTGAAAATCATAGAGGCGCGATATTTGCCCAACATGGACATGCTCTCCGAGCGATTCCGGCGATTGTTCTCGGCCTGCCGCAAGCCATTCTCGAGCCCTAAACAGCACCGCAGTCACCATAAAATCATCACCAGCGACCCTTACGTCACGGTCTGCCTCGCCGGAGCTACCGTCGCCAGGACGCGCGTGATCTCCAACTCCCAGAACCCGGAATGGAAGGAGCATTTCAAGATCCCTCTCGCCCACCCCGTCTCGCAAGTCGAGTTCTACGTCAAAGACAACGACATGTTCGGCGCCGATTTAATCGGCGTCGCGTCGGTCTCGGCGCAGCGAATCCTCTCCGGCGAGACGATCAGCGATTGGTTTCCGATAATCGGGCCGTTGGGGAAGCCGCCGAAACCGGACTCGGCGGTTAGGTTGGAAATGAGGTTCACGAAATGCGAGGACAATCCGTTGTATCAGTACGGAATGTCCCACGAACGAGGTCACGTGACGCTGTACCAGGACGCGCACGTGCCGGACTCGGTGATGGAGGACATAGAATTGGACGACGGGGTTCAGTTTGAGCATGGGAAGTGCTGGGAGGATATATGTCACGCAATCTTGGAGGCCCATCATTTGGTGTACATTGTGGGCTGGTCCATTTATCACAAGGTCAAGGTGGTCAGAGAGCCCAGCAAGCCCTTGCCCAGCGGCGGCAATTTGAATTTGGGGGAGTTGCTCAAGTATAAATCCCAGGAAGGGTTGAGAGTTTTGTTGCTGGTTTGGGATGATAAGACTTCTCACAGCAAGTTCTTCATCAATACGACCGGAGTGATGCAAACCCATGATGAAGAAACCAGGAAGTTTTTTAAGCATTCTTCGGTGTCATGCGTGCTGTCACCGCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGTTGTTGGGACCTTGTTTACGCATCATCAAAAGTGTGTGATTGTGGATACACAAGCGTCTGGAAACAACCGAAAGATTACTGCATTTATAGGAGGTCTGGACCTCTGTGATGGCCGCTATGATACTCCTGAACATCGGCTGTTTCGCGATGTTGACACAGTTTTCCAGGGTGATTTCCATAATCCCACATTGGCTGGTACAAAGGGTCCAAGACAACCCTGGCATGATCTACATTGCAAAATTGAAGGGCCGGCTGCATACGATGTGCTAACTAATTTTGAGCAGCGTTGGAAAAGAGCCACAAAATGGTCAGAGTTGGGCCAACGCTTTAAAAGAGTGTCGCGTTGGCACGACGATGCTTTGATCAAGTTGGAGCGCATCTCATGGATACTTAGTCCCGCACCAAAAAGTTCCAATGATGATCCTGCATTACGGGTTTCAGATGAAGATGATCCTCAAAACTGGCGTGTTCAGATATTCCGATCCATAGATTCTGGATCTGTGAAAGGATTTCCCAAAGATGTCTATGAAGCTGAGAATCAGAATCTTTTCTGCGCCAAAAATTTGGTTATAGACAAGAGCATCCAAACAGCATATATTGAAGCAATCAGATCTGCGCAACACTTCATATACATTGAGAATCAGTATTTCCTCGGATCATCTTATGCATGGCCAACTTACAAAGAAGCAGGTGCTGACAATTTAATTCCAATGGAGTTGGCATTAAAGATTGCTAGTAAGATACGAGCCAAAGAGAGATTTGCAGTTTATGTCGTGATACCAATGTGGCCAGAAGGTGTGCCCTCTTCTGCTCCTGTGCAACAAATTCTCTTCTGGCAGGGACAAACAATGCAAATGATGTATGAAATCATAGCAAAAGAGCTGAAATCCATGAATATTGCGAATGCTCATCCGCAGGACTACCTAAATTTCTACTGTCTTGGTAATCGGGAAAAGCTGCCTGCCACAGTGTCCTGTACAAATAACCAAGCTCCCAGAACTGGTTCTCCAAGTCACACGGTTTCCGCCTCCCAAAAATTTCAACGGTTTATGATTTATGTTCATGCCAAGGGAATGGTAGTAGATGATGAGTACGTGATTATAGGTTCTGCGAATATCAACCAACGATCCATGGCAGGATCTAGGGACACCGAGATAGCCATGGGGGCATATCAACCGCATCACACGTGGGGTAAGAAGAAGCGGCATCCTCATGGCCAGGTATATGGATATAGAATGTCACTTTGGGCAGAACACATGGGGATGGTTGAGAATTGCTTCAAGGAGCCTCAAACATTAGAATGTGTGAAGCGTGTGAACGACATTGGTCAGGATAATTGGAGTAGGTTCGTGGCCGATGATTTTATAGAATTGCAGGGACACCTCATCAAATACCCTGTTGAGGTTTATGCCAATGGGAAGGTAGGTGCATTGCCTGGACGAGAGAGCTTCCCTGATGTTGGCGGTAAGATCCTCGGCGCCCGCACTAACCTTCCTGATGCTTTAACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

830

Amino Acids

94.37

Weight (kDa)

7.64

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	15 - 141	1.5e-17	C2 domain
PLDc_2	PF13091	675 - 714	1.9e-06	PLD-like domain
PLDc	PF00614	678 - 703	2.5e-08	Phospholipase D Active site motif
PLD_C	PF12357	750 - 820	1.3e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1658
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	1596
Acc36I	ACCTGC	1 cut(s)	1658
AccB1I	GGYRCC	2 cut(s)	347, 2456
AccB7I	CCANNNNNTGG	2 cut(s)	673, 1284
AccII	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
AclWI	GGATC	9 cut(s)	280, 1394, 1424, 1455, 1483, 1642, 2100, 2125, 2443
AcoI	YGGCCR	5 cut(s)	1090, 1649, 1766, 2194, 2331
AcsI	RAATTY	5 cut(s)	760, 1540, 1803, 1906, 2015
AcvI	CACGTG	3 cut(s)	544, 568, 2166
AcyI	GRCGYC	3 cut(s)	348, 363, 2457
AfaI	GTAC	7 cut(s)	35, 518, 554, 680, 1177, 1957, 2072
AflIII	ACRYGT	2 cut(s)	339, 2163
AgsI	TTSAA	8 cut(s)	58, 283, 760, 970, 1223, 1580, 2021, 2260
AjnI	CCWGG	9 cut(s)	48, 230, 555, 789, 893, 1143, 1196, 2196, 2413
AjuI	GAANNNNNNNTTGG	2 cut(s)	2206, 2238
AloI	GAACNNNNNNTCC	4 cut(s)	467, 499, 1969, 2001
AluBI	AGCT	7 cut(s)	221, 958, 1511, 1861, 1936, 1970, 2427
AluI	AGCT	7 cut(s)	221, 958, 1511, 1861, 1936, 1970, 2427
Alw26I	GTCTC	3 cut(s)	310, 379, 395
AlwI	GGATC	9 cut(s)	280, 1394, 1424, 1455, 1483, 1642, 2100, 2125, 2443
AlwNI	CAGNNNCTG	1 cut(s)	1673
Ama87I	CYCGRG	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	382, 1232, 1261, 1936
ApoI	RAATTY	5 cut(s)	760, 1540, 1803, 1906, 2015
Asp700I	GAANNNNTTC	3 cut(s)	1526, 1981, 2255
AspLEI	GCGC	9 cut(s)	73, 240, 350, 382, 565, 1356, 1535, 1597, 2459
AspS9I	GGNCC	8 cut(s)	431, 664, 693, 987, 1078, 1184, 1226, 1297
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	161, 175, 592, 927, 1160
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	4 cut(s)	693, 987, 1078, 1184
BaeGI	GKGCMC	1 cut(s)	1782
BaeI	ACNNNNGTAYC	2 cut(s)	1748, 1781
BalI	TGGCCA	3 cut(s)	1651, 1768, 2196
BanI	GGYRCC	2 cut(s)	347, 2456
BanII	GRGCYC	2 cut(s)	152, 729
BbrPI	CACGTG	3 cut(s)	544, 568, 2166
BbvI	GCAGC	4 cut(s)	394, 1219, 1273, 1923
BccI	CCATC	4 cut(s)	577, 675, 1082, 2236
BceAI	ACGGC	2 cut(s)	58, 418
BciT130I	CCWGG	9 cut(s)	50, 232, 557, 791, 895, 1145, 1198, 2198, 2415
BciVI	GTATCC	2 cut(s)	1018, 1359
BclI	TGATCA	1 cut(s)	1341
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	310, 379, 395
BfaI	CTAG	2 cut(s)	1713, 2121
BfoI	RGCGCY	2 cut(s)	351, 2460
BfuAI	ACCTGC	1 cut(s)	1658
BfuI	GTATCC	2 cut(s)	1018, 1359
BglI	GCCNNNNNGGC	1 cut(s)	2144
BglII	AGATCT	1 cut(s)	1589
BlpI	GCTNAGC	1 cut(s)	959
Bme18I	GGWCC	4 cut(s)	693, 987, 1078, 1184
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	8 cut(s)	431, 664, 693, 987, 1078, 1184, 1226, 1297
BmiI	GGNNCC	5 cut(s)	349, 988, 1185, 2265, 2458
BmsI	GCATC	8 cut(s)	861, 1009, 1324, 1365, 1569, 2167, 2194, 2467
BoxI	GACNNNNGTC	1 cut(s)	2304
BplI	GAGNNNNNCTC	2 cut(s)	1343, 1375
Bpu1102I	GCTNAGC	1 cut(s)	959
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	4 cut(s)	544, 568, 2074, 2166
BsaHI	GRCGYC	3 cut(s)	348, 363, 2457
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	8 cut(s)	789, 1144, 1196, 1630, 2046, 2109, 2139, 2452
BsaWI	WCCGGW	2 cut(s)	454, 863
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 210, 240, 1969, 1999
Bse118I	RCCGGY	1 cut(s)	1228
Bse1I	ACTGG	2 cut(s)	1445, 1984
Bse3DI	GCAATG	2 cut(s)	1210, 2408
BseBI	CCWGG	9 cut(s)	50, 232, 557, 791, 895, 1145, 1198, 2198, 2415
BseDI	CCNNGG	8 cut(s)	789, 1144, 1196, 1630, 2046, 2109, 2139, 2452
BseGI	GGATG	5 cut(s)	829, 1560, 1888, 2185, 2247
BseMI	GCAATG	2 cut(s)	1210, 2408
BseMII	CTCAG	1 cut(s)	1503
BseNI	ACTGG	2 cut(s)	1445, 1984
BseSI	GKGCMC	1 cut(s)	1782
BseXI	GCAGC	4 cut(s)	394, 1219, 1273, 1923
BseYI	CCCAGC	3 cut(s)	633, 728, 743
Bsh1236I	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
Bsh1285I	CGRYCG	1 cut(s)	864
BshNI	GGYRCC	2 cut(s)	347, 2456
BsiEI	CGRYCG	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	8 cut(s)	112, 216, 263, 396, 455, 572, 864, 1229
BslFI	GGGAC	6 cut(s)	511, 1000, 1359, 1833, 2138, 2370
BsmAI	GTCTC	3 cut(s)	310, 379, 395
BsmBI	CGTCTC	2 cut(s)	310, 395
BsmFI	GGGAC	6 cut(s)	511, 1000, 1359, 1833, 2138, 2370
BsmI	GAATGC	2 cut(s)	910, 1888
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	152, 729, 1782
Bsp1407I	TGTACA	2 cut(s)	678, 1955
Bsp1720I	GCTNAGC	1 cut(s)	959
Bsp19I	CCATGG	2 cut(s)	2109, 2139
Bsp68I	TCGCGA	1 cut(s)	1125
BspCNI	CTCAG	1 cut(s)	1504
BspFNI	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
BspLI	GGNNCC	5 cut(s)	349, 988, 1185, 2265, 2458
BspMI	ACCTGC	1 cut(s)	1658
BspPI	GGATC	9 cut(s)	280, 1394, 1424, 1455, 1483, 1642, 2100, 2125, 2443
BspT107I	GGYRCC	2 cut(s)	347, 2456
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	2 cut(s)	1210, 2408
BsrFI	RCCGGY	1 cut(s)	1228
BsrGI	TGTACA	2 cut(s)	678, 1955
BsrI	ACTGG	2 cut(s)	1445, 1984
BssAI	RCCGGY	1 cut(s)	1228
BssECI	CCNNGG	8 cut(s)	789, 1144, 1196, 1630, 2046, 2109, 2139, 2452
BssNI	GRCGYC	3 cut(s)	348, 363, 2457
BssT1I	CCWWGG	3 cut(s)	2046, 2109, 2139
Bst2UI	CCWGG	9 cut(s)	50, 232, 557, 791, 895, 1145, 1198, 2198, 2415
Bst4CI	ACNGT	7 cut(s)	205, 226, 1138, 1916, 1948, 1999, 2025
Bst6I	CTCTTC	2 cut(s)	1789, 1814
BstACI	GRCGYC	3 cut(s)	348, 363, 2457
BstAUI	TGTACA	2 cut(s)	678, 1955
BstBAI	YACGTR	4 cut(s)	544, 568, 2074, 2166
BstC8I	GCNNGC	8 cut(s)	130, 137, 734, 929, 949, 1230, 1941, 2461
BstDEI	CTNAG	3 cut(s)	959, 1370, 1512
BstDSI	CCRYGG	2 cut(s)	2109, 2139
BstF5I	GGATG	5 cut(s)	829, 1560, 1888, 2185, 2247
BstFNI	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
BstH2I	RGCGCY	2 cut(s)	351, 2460
BstHHI	GCGC	9 cut(s)	73, 240, 350, 382, 565, 1356, 1535, 1597, 2459
BstMAI	GTCTC	3 cut(s)	310, 379, 395
BstMCI	CGRYCG	1 cut(s)	864
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 103, 112, 227, 733, 937, 2144
BstNI	CCWGG	9 cut(s)	50, 232, 557, 791, 895, 1145, 1198, 2198, 2415
BstNSI	RCATGY	2 cut(s)	97, 343
BstPAI	GACNNNNGTC	1 cut(s)	2304
BstSLI	GKGCMC	1 cut(s)	1782
BstUI	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
BstV1I	GCAGC	4 cut(s)	394, 1219, 1273, 1923
BstX2I	RGATCY	5 cut(s)	285, 1475, 1589, 2117, 2448
BstXI	CCANNNNNNTGG	3 cut(s)	1543, 2053, 2204
BstYI	RGATCY	5 cut(s)	285, 1475, 1589, 2117, 2448
BsuI	GTATCC	2 cut(s)	1018, 1359
BtgI	CCRYGG	2 cut(s)	2109, 2139
BtgZI	GCGATG	1 cut(s)	1140
BtsCI	GGATG	5 cut(s)	829, 1560, 1888, 2185, 2247
BtsIMutI	CAGTG	1 cut(s)	1953
BtuMI	TCGCGA	1 cut(s)	1125
BveI	ACCTGC	1 cut(s)	1658
Cac8I	GCNNGC	8 cut(s)	130, 137, 734, 929, 949, 1230, 1941, 2461
CaiI	CAGNNNCTG	1 cut(s)	1673
CfoI	GCGC	9 cut(s)	73, 240, 350, 382, 565, 1356, 1535, 1597, 2459
Cfr10I	RCCGGY	1 cut(s)	1228
Cfr13I	GGNCC	8 cut(s)	431, 664, 693, 987, 1078, 1184, 1226, 1297
CseI	GACGC	6 cut(s)	244, 352, 357, 556, 569, 1023
Csp6I	GTAC	7 cut(s)	34, 517, 553, 679, 1176, 1956, 2071
CviQI	GTAC	7 cut(s)	34, 517, 553, 679, 1176, 1956, 2071
DdeI	CTNAG	3 cut(s)	959, 1370, 1512
DinI	GGCGCC	2 cut(s)	349, 2458
DraI	TTTAAA	1 cut(s)	1309
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	5 cut(s)	1090, 1649, 1766, 2194, 2331
Eam1104I	CTCTTC	2 cut(s)	1789, 1814
EarI	CTCTTC	2 cut(s)	1789, 1814
EciI	GGCGGA	2 cut(s)	20, 1993
Eco130I	CCWWGG	3 cut(s)	2046, 2109, 2139
Eco24I	GRGCYC	2 cut(s)	152, 729
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	4 cut(s)	693, 987, 1078, 1184
Eco72I	CACGTG	3 cut(s)	544, 568, 2166
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	987
EcoRII	CCWGG	9 cut(s)	48, 230, 555, 789, 893, 1143, 1196, 2196, 2413
EcoT14I	CCWWGG	3 cut(s)	2046, 2109, 2139
EcoT22I	ATGCAT	1 cut(s)	1648
EcoT38I	GRGCYC	2 cut(s)	152, 729
EgeI	GGCGCC	2 cut(s)	349, 2458
EheI	GGCGCC	2 cut(s)	349, 2458
ErhI	CCWWGG	3 cut(s)	2046, 2109, 2139
Esp3I	CGTCTC	2 cut(s)	310, 395
FaqI	GGGAC	6 cut(s)	511, 1000, 1359, 1833, 2138, 2370
FauI	CCCGC	2 cut(s)	1384, 2468
FbaI	TGATCA	1 cut(s)	1341
FokI	GGATG	5 cut(s)	836, 1547, 1875, 2172, 2254
FriOI	GRGCYC	2 cut(s)	152, 729
FspBI	CTAG	2 cut(s)	1713, 2121
FspI	TGCGCA	1 cut(s)	1596
GlaI	GCGC	9 cut(s)	72, 239, 349, 381, 564, 1355, 1534, 1596, 2458
GsaI	CCCAGC	3 cut(s)	637, 732, 747
HaeII	RGCGCY	2 cut(s)	351, 2460
HapII	CCGG	8 cut(s)	112, 216, 263, 396, 455, 572, 864, 1229
HgaI	GACGC	6 cut(s)	244, 352, 357, 556, 569, 1023
HhaI	GCGC	9 cut(s)	73, 240, 350, 382, 565, 1356, 1535, 1597, 2459
Hin1I	GRCGYC	3 cut(s)	348, 363, 2457
Hin6I	GCGC	9 cut(s)	71, 238, 348, 380, 563, 1354, 1533, 1595, 2457
HinP1I	GCGC	9 cut(s)	71, 238, 348, 380, 563, 1354, 1533, 1595, 2457
HincII	GTYRAC	1 cut(s)	1132
HindII	GTYRAC	1 cut(s)	1132
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	8 cut(s)	108, 387, 458, 575, 1469, 1516, 1522, 1618
HpaII	CCGG	8 cut(s)	112, 216, 263, 396, 455, 572, 864, 1229
HphI	GGTGA	5 cut(s)	161, 175, 592, 927, 1160
Hpy166II	GTNNAC	6 cut(s)	34, 486, 679, 996, 1132, 2296
Hpy8I	GTNNAC	6 cut(s)	34, 486, 679, 996, 1132, 2296
Hpy99I	CGWCG	5 cut(s)	230, 368, 373, 608, 1334
HpyAV	CCTTC	7 cut(s)	47, 265, 788, 1217, 1766, 2392, 2480
HpyCH4III	ACNGT	7 cut(s)	205, 226, 1138, 1916, 1948, 1999, 2025
HpyCH4IV	ACGT	6 cut(s)	198, 324, 543, 567, 2073, 2165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 103, 112, 227, 733, 937, 2144
HpyF3I	CTNAG	3 cut(s)	959, 1370, 1512
HpySE526I	ACGT	6 cut(s)	198, 324, 543, 567, 2073, 2165
Hsp92I	GRCGYC	3 cut(s)	348, 363, 2457
HspAI	GCGC	9 cut(s)	71, 238, 348, 380, 563, 1354, 1533, 1595, 2457
KasI	GGCGCC	2 cut(s)	347, 2456
KroI	GCCGGC	1 cut(s)	1228
KroNI	GCCGGC	1 cut(s)	1230
Ksp22I	TGATCA	1 cut(s)	1341
LmnI	GCTCC	6 cut(s)	218, 274, 1351, 1795, 1975, 2263
Lsp1109I	GCAGC	4 cut(s)	394, 1219, 1273, 1923
LweI	GCATC	8 cut(s)	861, 1009, 1324, 1365, 1569, 2167, 2194, 2467
MaeI	CTAG	2 cut(s)	1713, 2121
MaeII	ACGT	6 cut(s)	198, 324, 543, 567, 2073, 2165
MaeIII	GTNAC	8 cut(s)	167, 199, 539, 544, 647, 933, 1991, 2217
MboII	GAAGA	8 cut(s)	20, 841, 899, 906, 1436, 1776, 1801, 2188
MflI	RGATCY	5 cut(s)	285, 1475, 1589, 2117, 2448
MhlI	GDGCHC	3 cut(s)	152, 729, 1782
MlsI	TGGCCA	3 cut(s)	1651, 1768, 2196
MluNI	TGGCCA	3 cut(s)	1651, 1768, 2196
Mly113I	GGCGCC	2 cut(s)	348, 2457
MlyI	GAGTC	2 cut(s)	452, 569
MmeI	TCCRAC	4 cut(s)	273, 453, 1247, 1329
Mox20I	TGGCCA	3 cut(s)	1651, 1768, 2196
Mph1103I	ATGCAT	1 cut(s)	1648
MroNI	GCCGGC	1 cut(s)	1228
MroXI	GAANNNNTTC	3 cut(s)	1526, 1981, 2255
MscI	TGGCCA	3 cut(s)	1651, 1768, 2196
MseI	TTAA	7 cut(s)	356, 906, 1308, 1682, 1703, 2483, 2491
MslI	CAYNNNNRTG	5 cut(s)	92, 1332, 2190, 2240, 2278
Msp20I	TGGCCA	3 cut(s)	1651, 1768, 2196
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	8 cut(s)	112, 216, 263, 396, 455, 572, 864, 1229
Mva1269I	GAATGC	2 cut(s)	910, 1888
MvaI	CCWGG	9 cut(s)	50, 232, 557, 791, 895, 1145, 1198, 2198, 2415
MvnI	CGCG	8 cut(s)	73, 238, 240, 368, 563, 940, 1125, 1321
MwoI	GCNNNNNNNGC	7 cut(s)	79, 103, 112, 227, 733, 937, 2144
NaeI	GCCGGC	1 cut(s)	1230
NarI	GGCGCC	2 cut(s)	348, 2457
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	2 cut(s)	2109, 2139
NgoMIV	GCCGGC	1 cut(s)	1228
NlaIV	GGNNCC	5 cut(s)	349, 988, 1185, 2265, 2458
NmeAIII	GCCGAG	4 cut(s)	104, 356, 440, 2433
NmuCI	GTSAC	8 cut(s)	167, 199, 539, 544, 647, 933, 1991, 2217
NruI	TCGCGA	1 cut(s)	1125
NsbI	TGCGCA	1 cut(s)	1596
NsiI	ATGCAT	1 cut(s)	1648
NspI	RCATGY	2 cut(s)	97, 343
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	1658
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 321
PctI	GAATGC	2 cut(s)	910, 1888
PdiI	GCCGGC	1 cut(s)	1230
PdmI	GAANNNNTTC	3 cut(s)	1526, 1981, 2255
PfeI	GAWTC	6 cut(s)	108, 387, 1469, 1516, 1522, 1618
PflMI	CCANNNNNTGG	2 cut(s)	673, 1284
PleI	GAGTC	2 cut(s)	452, 569
PluTI	GGCGCC	2 cut(s)	351, 2460
PmaCI	CACGTG	3 cut(s)	544, 568, 2166
PmlI	CACGTG	3 cut(s)	544, 568, 2166
PpsI	GAGTC	2 cut(s)	452, 569
Ppu21I	YACGTR	4 cut(s)	544, 568, 2074, 2166
PpuMI	RGGWCCY	1 cut(s)	987
PscI	ACATGT	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	2304
Psp5II	RGGWCCY	1 cut(s)	987
Psp6I	CCWGG	9 cut(s)	48, 230, 555, 789, 893, 1143, 1196, 2196, 2413
PspCI	CACGTG	3 cut(s)	544, 568, 2166
PspFI	CCCAGC	3 cut(s)	633, 728, 743
PspGI	CCWGG	9 cut(s)	48, 230, 555, 789, 893, 1143, 1196, 2196, 2413
PspN4I	GGNNCC	5 cut(s)	349, 988, 1185, 2265, 2458
PspPI	GGNCC	8 cut(s)	431, 664, 693, 987, 1078, 1184, 1226, 1297
PspPPI	RGGWCCY	1 cut(s)	987
PstNI	CAGNNNCTG	1 cut(s)	1673
PsuI	RGATCY	5 cut(s)	285, 1475, 1589, 2117, 2448
RruI	TCGCGA	1 cut(s)	1125
RsaI	GTAC	7 cut(s)	35, 518, 554, 680, 1177, 1957, 2072
RsaNI	GTAC	7 cut(s)	34, 517, 553, 679, 1176, 1956, 2071
RseI	CAYNNNNRTG	5 cut(s)	92, 1332, 2190, 2240, 2278
SaqAI	TTAA	7 cut(s)	356, 906, 1308, 1682, 1703, 2483, 2491
Sau96I	GGNCC	8 cut(s)	431, 664, 693, 987, 1078, 1184, 1226, 1297
SchI	GAGTC	2 cut(s)	452, 569
SduI	GDGCHC	3 cut(s)	152, 729, 1782
SfaNI	GCATC	8 cut(s)	861, 1009, 1324, 1365, 1569, 2167, 2194, 2467
SfoI	GGCGCC	2 cut(s)	349, 2458
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	4 cut(s)	693, 987, 1078, 1184
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	5 cut(s)	92, 1332, 2190, 2240, 2278
SmlI	CTYRAG	2 cut(s)	145, 776
SmoI	CTYRAG	2 cut(s)	145, 776
SspDI	GGCGCC	2 cut(s)	347, 2456
SspI	AATATT	1 cut(s)	1876
SspMI	CTAG	2 cut(s)	1713, 2121
StyI	CCWWGG	3 cut(s)	2046, 2109, 2139
TaaI	ACNGT	7 cut(s)	205, 226, 1138, 1916, 1948, 1999, 2025
TaiI	ACGT	6 cut(s)	201, 327, 546, 570, 2076, 2168
TaqI	TCGA	2 cut(s)	146, 315
TaqII	GACCGA	1 cut(s)	361
TatI	WGTACW	2 cut(s)	678, 1955
TauI	GCSGC	6 cut(s)	135, 448, 750, 753, 1095, 2185
TfiI	GAWTC	6 cut(s)	108, 387, 1469, 1516, 1522, 1618
Tru1I	TTAA	7 cut(s)	356, 906, 1308, 1682, 1703, 2483, 2491
Tru9I	TTAA	7 cut(s)	356, 906, 1308, 1682, 1703, 2483, 2491
TscAI	CASTG	1 cut(s)	1953
TseFI	GTSAC	8 cut(s)	167, 199, 539, 544, 647, 933, 1991, 2217
TseI	GCWGC	4 cut(s)	382, 1232, 1261, 1936
Tsp45I	GTSAC	8 cut(s)	167, 199, 539, 544, 647, 933, 1991, 2217
TspDTI	ATGAA	8 cut(s)	841, 900, 1437, 1521, 1594, 1857, 1886, 2030
TspGWI	ACGGA	2 cut(s)	495, 534
TspRI	CASTG	1 cut(s)	1953
Van91I	CCANNNNNTGG	2 cut(s)	673, 1284
VpaK11BI	GGWCC	4 cut(s)	693, 987, 1078, 1184
XapI	RAATTY	5 cut(s)	760, 1540, 1803, 1906, 2015
XceI	RCATGY	2 cut(s)	97, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1194
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	3 cut(s)	1526, 1981, 2255
XspI	CTAG	2 cut(s)	1713, 2121
Zsp2I	ATGCAT	1 cut(s)	1648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.