Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

15143205 .. 15143601

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1149700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATGATAGTTGGTGATGAATACATAATCATTGGATCTGCGAACATAAATCAAAAGTCAATGGATGGGGCAAGGGACTCTAAGATTGCTATAGGAGAATTCCAACCTAACCATTTAGCTTCCACAATCCCAGCCAGGGCCCAGATGTATGCTTTCAGACTAGCACTATGGTATGAGCACCTCAAAGTGGATGACAACTCCTTCTGGCATCTAGAATCTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

76

Amino Acids

8.57

Weight (kDa)

5.17

Isoelectric Point (pI)

25.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	136, 187
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	138
ApaI	GGGCCC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	138, 139
AsuHPI	GGTGA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	136
BfaI	CTAG	2 cut(s)	161, 212
BfmI	CTRYAG	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	138, 139
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 187
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	70, 196
BseLI	CCNNNNNNNGG	2 cut(s)	136, 187
BseSI	GKGCMC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	136, 187
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	140
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	142, 180
Bsp143I	GATC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	70, 196
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	70, 196
Cfr13I	GGNCC	2 cut(s)	138, 139
CviJI	RGCY	3 cut(s)	119, 134, 140
CviKI_1	RGCY	3 cut(s)	119, 134, 140
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	142
FaiI	YATR	6 cut(s)	26, 47, 92, 150, 169, 174
FaqI	GGGAC	1 cut(s)	89
FokI	GGATG	2 cut(s)	77, 203
FriOI	GRGCYC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	161, 212
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	77, 215
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	121, 144, 148, 155, 190
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	161, 212
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	142, 180
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NdeII	GATC	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	140
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	138, 139
PsuI	RGATCY	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	2 cut(s)	138, 139
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	142, 180
SetI	ASST	3 cut(s)	109, 121, 183
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	90
SgeI	CNNG	8 cut(s)	84, 143, 147, 148, 154, 173, 217, 224
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	2 cut(s)	161, 212
StyD4I	CCNGG	1 cut(s)	134
TasI	AATT	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	211
XspI	CTAG	2 cut(s)	161, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.