Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436567.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

1239 .. 1439

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436567.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atgaagggtcacctcctcaagtatccggttaaagttggtccaactggcgaggtggagcctcttccaagctgtgcagcatttccagatgtcggtggctacatactggggagtctcggcgacatagggaagagtctagggatcggtagtattaatgggaggggaatatcattcagggccatgcaagaaaatctcaccatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

66

Amino Acids

6.83

Weight (kDa)

7.91

Isoelectric Point (pI)

18.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	74
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	38, 174
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	86
BciVI	GTATCC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	38, 174
BmiI	GGNNCC	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	49, 108
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	49, 108
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	49, 108
BssMI	GATC	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	66, 122
BstEII	GGTNACC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	38, 174
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	4 cut(s)	58, 69, 96, 176
CviKI_1	RGCY	4 cut(s)	58, 69, 96, 176
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	2 cut(s)	66, 122
EarI	CTCTTC	2 cut(s)	66, 122
Eco47I	GGWCC	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
FaeI	CATG	1 cut(s)	181
FaiI	YATR	3 cut(s)	101, 122, 179
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	109, 130
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	74, 181
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	30, 39, 89, 96, 157
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	53, 139
MlyI	GAGTC	2 cut(s)	118, 139
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	23, 26, 43, 69, 150
MseI	TTAA	2 cut(s)	30, 150
MspI	CCGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	117, 138
PpsI	GAGTC	2 cut(s)	117, 138
PshBI	ATTAAT	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	38, 174
SaqAI	TTAA	2 cut(s)	30, 150
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	38, 174
SchI	GAGTC	2 cut(s)	118, 139
SetI	ASST	3 cut(s)	15, 54, 71
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SspMI	CTAG	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	30, 150
Tru9I	TTAA	2 cut(s)	30, 150
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	150
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.