Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

63353465 .. 63357601

Gene Structure 4137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGGCGGAAGATAACTCAGAACCATTGGTGGTGTACCTTCACGGCAACCTGGATTTGAAAATCATAGAGGCGCGATATTTGCCCAACATGGACATGCTCTCCGAGCGATTCCGGCGATTGTTCTCGGCCTGCCGCAAGCCATTCTCGAGCCCTAAACAGCACCGCAGTCACCATAAAATCATCACCAGCGACCCTTACGTCACGGTCTGCCTCGCCGGAGCTACCGTCGCCAGGACGCGCGTGATCTCCAACTCCCAGAACCCGGAATGGAAGGAGCATTTCAAGATCCCTCTCGCCCACCCCGTCTCGCAAGTCGAGTTCTACGTCAAAGACAACGACATGTTCGGCGCCGATTTAATCGGCGTCGCGTCCGTCTCGGCCCAGCGAATCCTCTCCGGCGAGACGATCAGCGATTGGTTTCCGATAATCGGGCCGCTGGGGAAGCCGCCGAAACCGGACTCGGCGGTTAGGTTGGAAATGAGATTCACGAAATGCGAGGACGATCCGTTGTATCAGTACGGAATATCCCACGAACGTTTCGGGGGAGTCGAGAATTGTTACTTTCCGGCACGGCGAGGAGGTCACGTGACGCTGTACCAGGACGCGCACGTGCCGGACTCGGTGATGGAGGACATAGAATTGGACGACGGGGTTCAGTTTGAGCATGGGAAGTGCTGGGAGGATATATGTCACGCAATCTTGGAGGCCCATCATTTGGTGTACATTGTGGGCTGGTCCATTTATCACAAGGTCAAGGTGGTCAGAGAGCCCAGTAAGCCCTTGCCCAGCGGCGGCAATTTGAATTTGGGGGAGTTGCTCAAGTATAAATCCCAGGAAGGGTTGAGAGTTTTGTTGCTGGTTTGGGATGATAAGACTTCTCACAGCAAGTTCTTCATCAACACGACCGGAGTGATGCAAACCCATGATGAAGAAACCAGGAAGTTTTTTAAGCATTCTTCGGTGTCATGCGTGCTGTCACCGCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGCATGCTTTATATACCATGGTTCAGTTACTGTTGTTGGGACCTTGTTTACGCATCATCAAAAGTGTGTGATTGTGGATACACAAGCGTCTGGAAACAATCGAAAGATTACTGCATTTATAGGAGGTCTGGACCTCTGTGATGGCCGCTATGATACTCCTGAACATCGGCTGTTTCGCGATGTTGACACAGTTTTCCAGGGTGATTTCCATAATCCCACATTGGCTGGTACAAAGGGTCCAAGACAACCCTGGCATGATCTACATTGCAAAATTGAAGGGCCGGCTGCATACGATGTGCTAACTAATTTTGAGCAGCGTTGGAAAAGAGCCACAAAATGGTCAGAGTTGGGCCAACGCTTTAAAAGAGTGTCGCGTTGGCACGACGATGCTTTGATCAAGTTGGAGCGCATCTCATGGATACTTAGTCCCGCACCAAAAAGTTCCAATGATGATCCTGCATTACGGGTTTCAGATGAAGATGATCCTCAAAACTGGCGTGTTCAGATATTCCGATCCATAGATTCTGGATCTGTGAAAGGATTTCCCAAAGATGTCTATGAAGCTGAGAATCAGAATCTTTTCTGCGCCAAAAATTTGGTTATAGACAAGAGCATCCAAACAGCATATATCGAAGCAATCAGATCTGCGCAACACTTCATATACATTGAGAATCAGTATTTCCTCGGATCATCTTATGCATGGCCAACTTACAAAGAAGCAGGTGCTGACAATTTAATTCCAATGGAGTTGGCATTAAAGATTGCTAGTAAGATACGAGCCAAAGAGAGATTTGCAGTTTATGTCGTGATACCAATGTGGCCAGAAGGTGTGCCCTCTTCTGCTCCTGTGCAACAAATTCTCTTCTGGCAGGGACAAACAATGCAAATGATGTATGAAATCATAGCAAAAGAGCTGAAATCCATGAATATTGCGAATGCTCATCCACAGGACTACCTAAATTTCTACTGTCTTGGTAATCGGGAAACGCTGCCTGCCACAGTGTCCTGTACAAATAACCAAGCTCCCAGAACTGGTTCTCCAAGTCACACGGTTTCCGCCTCCCAAAAATTTCAACGGTTTATGATTTATGTTCATGCCAAGGGAATGGTAGTAGATGATGAGTACGTGATAATAGGTTCTGCGAATATCAACCAACGATCCATGGCAGGATCTAGGGACACCGAGATAGCCATGGGGGCATATCAACCGCATCACACGTGGGGTAAGAAGAAGCGGCATCCTCACGGCCAGGTATATGGATATAGAATGTCACTTTGGGCAGAACACATGGGGATGGTTGAGAATTGCTTCAAGGAGCCTCAAACAGTAGAATGTGTGAAGCGTGTGAACGACATTGGTCAGGATAATTGGAGTAGGTTCGTGGCCGATGATTTTATAGAATTGCAGGGACACCTCATCAAATACCCTGTTGAGGTTTATGCCAATGGGAAGGTAGGTGCATTGCCTGGACGAGAGAGCTTCCCTGATGTTGGCGGTAAGATCCTCGGCGCCCGCACTAACCTTCCTGATGCTTTAACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

854

Amino Acids

96.94

Weight (kDa)

7.22

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	15 - 141	1.6e-17	C2 domain
PLDc_2	PF13091	699 - 738	2e-06	PLD-like domain
PLDc	PF00614	702 - 727	2.6e-08	Phospholipase D Active site motif
PLD_C	PF12357	774 - 844	1.9e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1730
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	1668
Acc36I	ACCTGC	1 cut(s)	1730
AccB1I	GGYRCC	2 cut(s)	347, 2528
AccB7I	CCANNNNNTGG	2 cut(s)	715, 1356
AccII	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
AclI	AACGTT	1 cut(s)	535
AcoI	YGGCCR	5 cut(s)	1162, 1721, 1838, 2266, 2403
AcsI	RAATTY	5 cut(s)	802, 1612, 1875, 1978, 2087
AcvI	CACGTG	3 cut(s)	586, 610, 2238
AcyI	GRCGYC	3 cut(s)	348, 363, 2529
AfaI	GTAC	7 cut(s)	35, 518, 596, 722, 1249, 2029, 2144
AflIII	ACRYGT	2 cut(s)	339, 2235
AgsI	TTSAA	7 cut(s)	58, 283, 802, 1012, 1295, 2093, 2332
AjnI	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1215, 1268, 2268, 2485
AjuI	GAANNNNNNNTTGG	2 cut(s)	2278, 2310
AloI	GAACNNNNNNTCC	2 cut(s)	2041, 2073
AluBI	AGCT	6 cut(s)	221, 1000, 1583, 1933, 2042, 2499
AluI	AGCT	6 cut(s)	221, 1000, 1583, 1933, 2042, 2499
Alw26I	GTCTC	3 cut(s)	310, 379, 395
AlwNI	CAGNNNCTG	2 cut(s)	1049, 1745
Ama87I	CYCGRG	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	1304, 1333, 2008
ApoI	RAATTY	5 cut(s)	802, 1612, 1875, 1978, 2087
Asp700I	GAANNNNTTC	3 cut(s)	1598, 2053, 2327
AspLEI	GCGC	8 cut(s)	73, 240, 350, 607, 1428, 1607, 1669, 2531
AspS9I	GGNCC	9 cut(s)	379, 431, 706, 735, 1059, 1150, 1256, 1298, 1369
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	161, 175, 634, 969, 1232
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	4 cut(s)	735, 1059, 1150, 1256
BaeGI	GKGCMC	1 cut(s)	1854
BaeI	ACNNNNGTAYC	2 cut(s)	1820, 1853
BalI	TGGCCA	2 cut(s)	1723, 1840
BanI	GGYRCC	2 cut(s)	347, 2528
BanII	GRGCYC	2 cut(s)	152, 771
BbrPI	CACGTG	3 cut(s)	586, 610, 2238
BbvI	GCAGC	3 cut(s)	1291, 1345, 1995
BccI	CCATC	4 cut(s)	619, 717, 1154, 2308
BceAI	ACGGC	3 cut(s)	58, 587, 2281
BciT130I	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1217, 1270, 2270, 2487
BciVI	GTATCC	2 cut(s)	1090, 1431
BclI	TGATCA	1 cut(s)	1413
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	310, 379, 395
BfaI	CTAG	2 cut(s)	1785, 2193
BfoI	RGCGCY	2 cut(s)	351, 2532
BfuAI	ACCTGC	1 cut(s)	1730
BfuI	GTATCC	2 cut(s)	1090, 1431
BglI	GCCNNNNNGGC	1 cut(s)	2216
BglII	AGATCT	1 cut(s)	1661
BlpI	GCTNAGC	1 cut(s)	1001
Bme18I	GGWCC	4 cut(s)	735, 1059, 1150, 1256
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	9 cut(s)	379, 431, 706, 735, 1059, 1150, 1256, 1298, 1369
BmiI	GGNNCC	5 cut(s)	349, 1060, 1257, 2337, 2530
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	8 cut(s)	903, 1081, 1396, 1437, 1641, 2239, 2266, 2539
BmuI	ACTGGG	1 cut(s)	765
BoxI	GACNNNNGTC	1 cut(s)	2376
BplI	GAGNNNNNCTC	2 cut(s)	1415, 1447
Bpu1102I	GCTNAGC	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	4 cut(s)	586, 610, 2146, 2238
BsaHI	GRCGYC	3 cut(s)	348, 363, 2529
BsaJI	CCNNGG	9 cut(s)	831, 1036, 1216, 1268, 1702, 2118, 2181, 2211, 2524
BsaWI	WCCGGW	2 cut(s)	454, 905
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 210, 240, 570, 600, 2041, 2071
Bse118I	RCCGGY	1 cut(s)	1300
Bse1I	ACTGG	3 cut(s)	771, 1517, 2056
Bse3DI	GCAATG	2 cut(s)	1282, 2480
BseBI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1217, 1270, 2270, 2487
BseDI	CCNNGG	9 cut(s)	831, 1036, 1216, 1268, 1702, 2118, 2181, 2211, 2524
BseGI	GGATG	5 cut(s)	871, 1632, 1960, 2257, 2319
BseMI	GCAATG	2 cut(s)	1282, 2480
BseMII	CTCAG	2 cut(s)	30, 1575
BseNI	ACTGG	3 cut(s)	771, 1517, 2056
BseRI	GAGGAG	1 cut(s)	591
BseSI	GKGCMC	1 cut(s)	1854
BseXI	GCAGC	3 cut(s)	1291, 1345, 1995
BseYI	CCCAGC	4 cut(s)	381, 436, 675, 785
Bsh1236I	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
Bsh1285I	CGRYCG	1 cut(s)	906
BshNI	GGYRCC	2 cut(s)	347, 2528
BsiEI	CGRYCG	1 cut(s)	906
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	9 cut(s)	112, 216, 263, 396, 455, 566, 614, 906, 1301
BslFI	GGGAC	5 cut(s)	1072, 1431, 1905, 2210, 2442
BsmAI	GTCTC	3 cut(s)	310, 379, 395
BsmBI	CGTCTC	3 cut(s)	310, 379, 395
BsmFI	GGGAC	5 cut(s)	1072, 1431, 1905, 2210, 2442
BsmI	GAATGC	2 cut(s)	952, 1960
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	152, 771, 1854
Bsp1407I	TGTACA	2 cut(s)	720, 2027
Bsp1720I	GCTNAGC	1 cut(s)	1001
Bsp19I	CCATGG	3 cut(s)	1036, 2181, 2211
Bsp68I	TCGCGA	1 cut(s)	1197
BspCNI	CTCAG	2 cut(s)	29, 1576
BspFNI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
BspLI	GGNNCC	5 cut(s)	349, 1060, 1257, 2337, 2530
BspMI	ACCTGC	1 cut(s)	1730
BspT107I	GGYRCC	2 cut(s)	347, 2528
BsrDI	GCAATG	2 cut(s)	1282, 2480
BsrFI	RCCGGY	1 cut(s)	1300
BsrGI	TGTACA	2 cut(s)	720, 2027
BsrI	ACTGG	3 cut(s)	771, 1517, 2056
BssAI	RCCGGY	1 cut(s)	1300
BssECI	CCNNGG	9 cut(s)	831, 1036, 1216, 1268, 1702, 2118, 2181, 2211, 2524
BssNI	GRCGYC	3 cut(s)	348, 363, 2529
BssT1I	CCWWGG	4 cut(s)	1036, 2118, 2181, 2211
Bst2UI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1217, 1270, 2270, 2487
Bst4CI	ACNGT	9 cut(s)	205, 226, 1051, 1210, 1988, 2020, 2071, 2097, 2347
Bst6I	CTCTTC	2 cut(s)	1861, 1886
BstACI	GRCGYC	3 cut(s)	348, 363, 2529
BstAUI	TGTACA	2 cut(s)	720, 2027
BstBAI	YACGTR	4 cut(s)	586, 610, 2146, 2238
BstC8I	GCNNGC	8 cut(s)	130, 137, 971, 991, 1024, 1302, 2013, 2533
BstDEI	CTNAG	4 cut(s)	16, 1001, 1442, 1584
BstDSI	CCRYGG	3 cut(s)	1036, 2181, 2211
BstF5I	GGATG	5 cut(s)	871, 1632, 1960, 2257, 2319
BstFNI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
BstH2I	RGCGCY	2 cut(s)	351, 2532
BstHHI	GCGC	8 cut(s)	73, 240, 350, 607, 1428, 1607, 1669, 2531
BstMAI	GTCTC	3 cut(s)	310, 379, 395
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 103, 112, 227, 442, 775, 979, 2216
BstNI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1217, 1270, 2270, 2487
BstNSI	RCATGY	3 cut(s)	97, 343, 1026
BstPAI	GACNNNNGTC	1 cut(s)	2376
BstSLI	GKGCMC	1 cut(s)	1854
BstUI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
BstV1I	GCAGC	3 cut(s)	1291, 1345, 1995
BstX2I	RGATCY	5 cut(s)	285, 1547, 1661, 2189, 2520
BstXI	CCANNNNNNTGG	3 cut(s)	1615, 2125, 2276
BstYI	RGATCY	5 cut(s)	285, 1547, 1661, 2189, 2520
BsuI	GTATCC	2 cut(s)	1090, 1431
BtgI	CCRYGG	3 cut(s)	1036, 2181, 2211
BtgZI	GCGATG	1 cut(s)	1212
BtsCI	GGATG	5 cut(s)	871, 1632, 1960, 2257, 2319
BtsIMutI	CAGTG	1 cut(s)	2025
BtuMI	TCGCGA	1 cut(s)	1197
BveI	ACCTGC	1 cut(s)	1730
Cac8I	GCNNGC	8 cut(s)	130, 137, 971, 991, 1024, 1302, 2013, 2533
CaiI	CAGNNNCTG	2 cut(s)	1049, 1745
CfoI	GCGC	8 cut(s)	73, 240, 350, 607, 1428, 1607, 1669, 2531
Cfr10I	RCCGGY	1 cut(s)	1300
Cfr13I	GGNCC	9 cut(s)	379, 431, 706, 735, 1059, 1150, 1256, 1298, 1369
CseI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1095
Csp6I	GTAC	7 cut(s)	34, 517, 595, 721, 1248, 2028, 2143
CviQI	GTAC	7 cut(s)	34, 517, 595, 721, 1248, 2028, 2143
DdeI	CTNAG	4 cut(s)	16, 1001, 1442, 1584
DinI	GGCGCC	2 cut(s)	349, 2530
DraI	TTTAAA	1 cut(s)	1381
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	5 cut(s)	1162, 1721, 1838, 2266, 2403
Eam1104I	CTCTTC	2 cut(s)	1861, 1886
EarI	CTCTTC	2 cut(s)	1861, 1886
EciI	GGCGGA	2 cut(s)	20, 2065
Eco130I	CCWWGG	4 cut(s)	1036, 2118, 2181, 2211
Eco24I	GRGCYC	2 cut(s)	152, 771
Eco47I	GGWCC	4 cut(s)	735, 1059, 1150, 1256
Eco72I	CACGTG	3 cut(s)	586, 610, 2238
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRII	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1215, 1268, 2268, 2485
EcoT14I	CCWWGG	4 cut(s)	1036, 2118, 2181, 2211
EcoT22I	ATGCAT	1 cut(s)	1720
EcoT38I	GRGCYC	2 cut(s)	152, 771
EgeI	GGCGCC	2 cut(s)	349, 2530
EheI	GGCGCC	2 cut(s)	349, 2530
ErhI	CCWWGG	4 cut(s)	1036, 2118, 2181, 2211
Esp3I	CGTCTC	3 cut(s)	310, 379, 395
FaqI	GGGAC	5 cut(s)	1072, 1431, 1905, 2210, 2442
FauI	CCCGC	2 cut(s)	1456, 2540
FbaI	TGATCA	1 cut(s)	1413
FokI	GGATG	5 cut(s)	878, 1619, 1947, 2244, 2326
FriOI	GRGCYC	2 cut(s)	152, 771
FspBI	CTAG	2 cut(s)	1785, 2193
FspI	TGCGCA	1 cut(s)	1668
GlaI	GCGC	8 cut(s)	72, 239, 349, 606, 1427, 1606, 1668, 2530
GsaI	CCCAGC	4 cut(s)	385, 440, 679, 789
HaeII	RGCGCY	2 cut(s)	351, 2532
HapII	CCGG	9 cut(s)	112, 216, 263, 396, 455, 566, 614, 906, 1301
HgaI	GACGC	6 cut(s)	244, 352, 357, 598, 611, 1095
HhaI	GCGC	8 cut(s)	73, 240, 350, 607, 1428, 1607, 1669, 2531
Hin1I	GRCGYC	3 cut(s)	348, 363, 2529
Hin6I	GCGC	8 cut(s)	71, 238, 348, 605, 1426, 1605, 1667, 2529
HinP1I	GCGC	8 cut(s)	71, 238, 348, 605, 1426, 1605, 1667, 2529
HincII	GTYRAC	1 cut(s)	1204
HindII	GTYRAC	1 cut(s)	1204
HindIII	AAGCTT	1 cut(s)	998
HpaII	CCGG	9 cut(s)	112, 216, 263, 396, 455, 566, 614, 906, 1301
HphI	GGTGA	5 cut(s)	161, 175, 634, 969, 1232
Hpy166II	GTNNAC	5 cut(s)	34, 721, 1068, 1204, 2368
Hpy8I	GTNNAC	5 cut(s)	34, 721, 1068, 1204, 2368
Hpy99I	CGWCG	4 cut(s)	230, 368, 650, 1406
HpyAV	CCTTC	7 cut(s)	47, 265, 830, 1289, 1838, 2464, 2552
HpyCH4III	ACNGT	9 cut(s)	205, 226, 1051, 1210, 1988, 2020, 2071, 2097, 2347
HpyCH4IV	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2145, 2237
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 103, 112, 227, 442, 775, 979, 2216
HpyF3I	CTNAG	4 cut(s)	16, 1001, 1442, 1584
HpySE526I	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2145, 2237
Hsp92I	GRCGYC	3 cut(s)	348, 363, 2529
HspAI	GCGC	8 cut(s)	71, 238, 348, 605, 1426, 1605, 1667, 2529
KasI	GGCGCC	2 cut(s)	347, 2528
KroI	GCCGGC	1 cut(s)	1300
KroNI	GCCGGC	1 cut(s)	1302
Ksp22I	TGATCA	1 cut(s)	1413
LmnI	GCTCC	6 cut(s)	218, 274, 1423, 1867, 2047, 2335
Lsp1109I	GCAGC	3 cut(s)	1291, 1345, 1995
LweI	GCATC	8 cut(s)	903, 1081, 1396, 1437, 1641, 2239, 2266, 2539
MaeI	CTAG	2 cut(s)	1785, 2193
MaeII	ACGT	7 cut(s)	198, 324, 535, 585, 609, 2145, 2237
MboII	GAAGA	8 cut(s)	20, 883, 941, 948, 1508, 1848, 1873, 2260
MflI	RGATCY	5 cut(s)	285, 1547, 1661, 2189, 2520
MhlI	GDGCHC	3 cut(s)	152, 771, 1854
MlsI	TGGCCA	2 cut(s)	1723, 1840
MluNI	TGGCCA	2 cut(s)	1723, 1840
Mly113I	GGCGCC	2 cut(s)	348, 2529
MlyI	GAGTC	3 cut(s)	452, 555, 611
MmeI	TCCRAC	4 cut(s)	273, 453, 1319, 1401
Mox20I	TGGCCA	2 cut(s)	1723, 1840
Mph1103I	ATGCAT	1 cut(s)	1720
MroNI	GCCGGC	1 cut(s)	1300
MroXI	GAANNNNTTC	3 cut(s)	1598, 2053, 2327
MscI	TGGCCA	2 cut(s)	1723, 1840
MseI	TTAA	7 cut(s)	356, 948, 1380, 1754, 1775, 2555, 2563
MslI	CAYNNNNRTG	3 cut(s)	92, 1404, 2312
Msp20I	TGGCCA	2 cut(s)	1723, 1840
MspA1I	CMGCKG	2 cut(s)	436, 789
MspI	CCGG	9 cut(s)	112, 216, 263, 396, 455, 566, 614, 906, 1301
Mva1269I	GAATGC	2 cut(s)	952, 1960
MvaI	CCWGG	9 cut(s)	50, 232, 599, 833, 937, 1217, 1270, 2270, 2487
MvnI	CGCG	8 cut(s)	73, 238, 240, 368, 605, 982, 1197, 1393
MwoI	GCNNNNNNNGC	8 cut(s)	79, 103, 112, 227, 442, 775, 979, 2216
NaeI	GCCGGC	1 cut(s)	1302
NarI	GGCGCC	2 cut(s)	348, 2529
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	3 cut(s)	1036, 2181, 2211
NgoMIV	GCCGGC	1 cut(s)	1300
NlaIV	GGNNCC	5 cut(s)	349, 1060, 1257, 2337, 2530
NmeAIII	GCCGAG	4 cut(s)	104, 356, 440, 2505
NmuCI	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2063, 2289
NruI	TCGCGA	1 cut(s)	1197
NsbI	TGCGCA	1 cut(s)	1668
NsiI	ATGCAT	1 cut(s)	1720
NspI	RCATGY	3 cut(s)	97, 343, 1026
PaeI	GCATGC	1 cut(s)	1026
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	1730
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 321, 546
PctI	GAATGC	2 cut(s)	952, 1960
PdiI	GCCGGC	1 cut(s)	1302
PdmI	GAANNNNTTC	3 cut(s)	1598, 2053, 2327
PfeI	GAWTC	7 cut(s)	108, 387, 483, 1541, 1588, 1594, 1690
PflMI	CCANNNNNTGG	2 cut(s)	715, 1356
PleI	GAGTC	3 cut(s)	452, 554, 611
PluTI	GGCGCC	2 cut(s)	351, 2532
PmaCI	CACGTG	3 cut(s)	586, 610, 2238
PmlI	CACGTG	3 cut(s)	586, 610, 2238
PpsI	GAGTC	3 cut(s)	452, 554, 611
Ppu21I	YACGTR	4 cut(s)	586, 610, 2146, 2238
PpuMI	RGGWCCY	1 cut(s)	1059
PscI	ACATGT	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	2376
Psp1406I	AACGTT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1215, 1268, 2268, 2485
PspCI	CACGTG	3 cut(s)	586, 610, 2238
PspFI	CCCAGC	4 cut(s)	381, 436, 675, 785
PspGI	CCWGG	9 cut(s)	48, 230, 597, 831, 935, 1215, 1268, 2268, 2485
PspN4I	GGNNCC	5 cut(s)	349, 1060, 1257, 2337, 2530
PspPI	GGNCC	9 cut(s)	379, 431, 706, 735, 1059, 1150, 1256, 1298, 1369
PspPPI	RGGWCCY	1 cut(s)	1059
PstNI	CAGNNNCTG	2 cut(s)	1049, 1745
PsuI	RGATCY	5 cut(s)	285, 1547, 1661, 2189, 2520
RruI	TCGCGA	1 cut(s)	1197
RsaI	GTAC	7 cut(s)	35, 518, 596, 722, 1249, 2029, 2144
RsaNI	GTAC	7 cut(s)	34, 517, 595, 721, 1248, 2028, 2143
RseI	CAYNNNNRTG	3 cut(s)	92, 1404, 2312
SaqAI	TTAA	7 cut(s)	356, 948, 1380, 1754, 1775, 2555, 2563
Sau96I	GGNCC	9 cut(s)	379, 431, 706, 735, 1059, 1150, 1256, 1298, 1369
SchI	GAGTC	3 cut(s)	452, 555, 611
SduI	GDGCHC	3 cut(s)	152, 771, 1854
SfaNI	GCATC	8 cut(s)	903, 1081, 1396, 1437, 1641, 2239, 2266, 2539
SfoI	GGCGCC	2 cut(s)	349, 2530
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	4 cut(s)	735, 1059, 1150, 1256
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	92, 1404, 2312
SmlI	CTYRAG	2 cut(s)	145, 818
SmoI	CTYRAG	2 cut(s)	145, 818
SphI	GCATGC	1 cut(s)	1026
SspDI	GGCGCC	2 cut(s)	347, 2528
SspI	AATATT	1 cut(s)	1948
SspMI	CTAG	2 cut(s)	1785, 2193
StyI	CCWWGG	4 cut(s)	1036, 2118, 2181, 2211
TaaI	ACNGT	9 cut(s)	205, 226, 1051, 1210, 1988, 2020, 2071, 2097, 2347
TaiI	ACGT	7 cut(s)	201, 327, 538, 588, 612, 2148, 2240
TaqI	TCGA	5 cut(s)	146, 315, 549, 1120, 1650
TatI	WGTACW	2 cut(s)	720, 2027
TauI	GCSGC	7 cut(s)	135, 436, 448, 792, 795, 1167, 2257
TfiI	GAWTC	7 cut(s)	108, 387, 483, 1541, 1588, 1594, 1690
Tru1I	TTAA	7 cut(s)	356, 948, 1380, 1754, 1775, 2555, 2563
Tru9I	TTAA	7 cut(s)	356, 948, 1380, 1754, 1775, 2555, 2563
TscAI	CASTG	1 cut(s)	2025
TseFI	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2063, 2289
TseI	GCWGC	3 cut(s)	1304, 1333, 2008
Tsp45I	GTSAC	8 cut(s)	167, 199, 581, 586, 689, 975, 2063, 2289
TspDTI	ATGAA	8 cut(s)	883, 942, 1509, 1593, 1666, 1929, 1958, 2102
TspGWI	ACGGA	3 cut(s)	361, 495, 534
TspRI	CASTG	1 cut(s)	2025
Van91I	CCANNNNNTGG	2 cut(s)	715, 1356
VpaK11BI	GGWCC	4 cut(s)	735, 1059, 1150, 1256
XapI	RAATTY	5 cut(s)	802, 1612, 1875, 1978, 2087
XceI	RCATGY	3 cut(s)	97, 343, 1026
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1266
XhoI	CTCGAG	1 cut(s)	145
XmnI	GAANNNNTTC	3 cut(s)	1598, 2053, 2327
XspI	CTAG	2 cut(s)	1785, 2193
Zsp2I	ATGCAT	1 cut(s)	1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.