Rorug07G0199500

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17255180 .. 17264124
8945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0199500.1

Sequence Viewer

Length: 1317 bp
ATGCTTACATCAAAACGAGAATCACTAGATAGGGATATAGTGATTTCGAGAGGCAGTGGAGATGGAGAGGATGATAAACCCTCATCAAGTTTAGGTAAACCTAAAAGTATTCATCCTCCCATTGAAAGCCATTGGCATTTCCCTGCGCCTCAAGATAGCAAAAAGCCTTCATCTTCAATGTCGAACTTGGGATTCAAAAAGTTCCGTGAGTCGTTCAAGAAACTTGGAGGGAGTAGTAGCAAGAGCATGAAAATGGTTCTTGCAGGAGTTCGTGATCCGAAAGATCAAAAGCTTGTTGACTCTTTTCGAGAACTGCTGTTCCTCGAGGGTCAGCTTCCTTCACAGCACCAGGATTATCATACACTCTTGCGGTTTCTTCGAATGAGGGACTTTGATCTTGCTAAAGCAAAAGAGGCCTTCTTTACTTATCTCAAGTGGCGTGAGGATTATAGGGTTGACGCAATTCCAAAAGAGTTCAAGTTTGAGGAATATGAGGCAGTTAAGAAGTGCTATCCTCATGGATTCCACGGGGTAGACCGATATGGTAGACCAATATACATCGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTGCAAGTAACTACACTTGAAAGATTTACAAAGTATCATGTGTCAGAACAAGAGAAAACATTGAATGTGAGATACCCTACATGCTCCATTGCAGCTAAGAAGCACGTAGCATCTACAACAAGTATCTTAGATGTGCATGGAGTGGGATTGGCAAATTTCTCGAAGCCTGCTCGATATCTCTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGGCAGCTTTCCTTGATGCACGAACATTAGCAAAGATTCGAGTGCTGGGATACAATTATCAGAGTGACTTGCTTGAAGTAATTGATCAAAGTAATTTGCCGACATTTCTGGGTGGAAGCTGCACTTGTTCTGAATATGGGGGCTGCCTTTTAAGTGACAGAGGACCCTGGAACAATCCGGAGATTACAGATGTGCTTCAGGCAATCTCTGCAGGCAATGAGGTAAACGGTAATGAAGAATACAGTAATGAGGCTTCAGAAGAGCCGCCGATGCAAAATAGGAAAATCCAAGTTTTAGAAGCAGCACTTCAAGACGCCAAGAAAAAAATTGAAGCATTAGAAGTTGCACTTGAGGACACCAAGAATGTCTTGAAAGAACTTGTGCAGCATGTAGAAGAGTTGAGATCAACTTCTTGGGAAGTACATTGCGCTTCAAATTAG

Protein Analysis

438

Amino Acids

49.79

Weight (kDa)

7.19

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 171 - 331 2.3e-26 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 323
AccI GTMKAC 3 cut(s) 534, 547, 579
AccIII TCCGGA 1 cut(s) 1054
AciI CCGC 2 cut(s) 370, 1142
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 748, 783
AcuI CTGAAG 2 cut(s) 1058, 1116
AcyI GRCGYC 1 cut(s) 1191
AfaI GTAC 1 cut(s) 1299
AjnI CCWGG 2 cut(s) 348, 1043
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 6 cut(s) 292, 334, 592, 689, 884, 996
AluI AGCT 6 cut(s) 292, 334, 592, 689, 884, 996
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 1054
AoxI GGCC 1 cut(s) 414
ApeKI GCWGC 6 cut(s) 686, 881, 996, 1020, 1178, 1261
ApoI RAATTY 2 cut(s) 748, 783
AspLEI GCGC 2 cut(s) 148, 1307
AspS9I GGNCC 1 cut(s) 1040
AsuII TTCGAA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 1040
BarI GAAGNNNNNNTAC 2 cut(s) 1114, 1146
BbvI GCAGC 6 cut(s) 698, 893, 983, 1007, 1190, 1273
BccI CCATC 2 cut(s) 56, 568
BcgI CGANNNNNNTGC 2 cut(s) 735, 769
BciT130I CCWGG 2 cut(s) 350, 1045
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 1086
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 7 cut(s) 687, 882, 997, 1021, 1142, 1179, 1262
BlsI GCNGC 7 cut(s) 688, 883, 998, 1022, 1143, 1180, 1263
Bme1390I CCNGG 2 cut(s) 350, 1045
Bme18I GGWCC 1 cut(s) 1040
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 1042
BmrFI CCNGG 2 cut(s) 350, 1045
BmsI GCATC 4 cut(s) 713, 852, 883, 1137
Bpu14I TTCGAA 1 cut(s) 379
BpuEI CTTGAG 3 cut(s) 135, 416, 1247
BsaAI YACGTR 1 cut(s) 700
BsaHI GRCGYC 1 cut(s) 1191
BsaJI CCNNGG 2 cut(s) 526, 1043
BsaWI WCCGGW 1 cut(s) 1054
Bse3DI GCAATG 3 cut(s) 681, 1099, 1300
BseAI TCCGGA 1 cut(s) 1054
BseBI CCWGG 2 cut(s) 350, 1045
BseDI CCNNGG 2 cut(s) 526, 1043
BseGI GGATG 3 cut(s) 76, 112, 579
BseMI GCAATG 3 cut(s) 681, 1099, 1300
BseXI GCAGC 6 cut(s) 698, 893, 983, 1007, 1190, 1273
BseYI CCCAGC 1 cut(s) 922
BsgI GTGCAG 2 cut(s) 982, 1280
BshFI GGCC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 1055
BslFI GGGAC 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 1054
Bsp143I GATC 5 cut(s) 274, 283, 394, 961, 1280
BspACI CCGC 2 cut(s) 370, 1142
BspANI GGCC 1 cut(s) 416
BspEI TCCGGA 1 cut(s) 1054
BspLI GGNNCC 1 cut(s) 1042
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 1131
BspT104I TTCGAA 1 cut(s) 379
BsrDI GCAATG 3 cut(s) 681, 1099, 1300
BssECI CCNNGG 2 cut(s) 526, 1043
BssMI GATC 5 cut(s) 274, 283, 394, 961, 1280
BssNI GRCGYC 1 cut(s) 1191
Bst2UI CCWGG 2 cut(s) 350, 1045
Bst4CI ACNGT 2 cut(s) 1106, 1121
Bst6I CTCTTC 2 cut(s) 1131, 1266
BstACI GRCGYC 1 cut(s) 1191
BstAPI GCANNNNNTGC 1 cut(s) 1085
BstBAI YACGTR 1 cut(s) 700
BstBI TTCGAA 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 762, 1090
BstDEI CTNAG 2 cut(s) 690, 721
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 3 cut(s) 76, 112, 579
BstHHI GCGC 2 cut(s) 148, 1307
BstKTI GATC 5 cut(s) 277, 286, 397, 964, 1283
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 5 cut(s) 274, 283, 394, 961, 1280
BstMWI GCNNNNNNNGC 4 cut(s) 413, 881, 1085, 1147
BstNI CCWGG 2 cut(s) 350, 1045
BstNSI RCATGY 2 cut(s) 678, 1268
BstSCI CCNGG 2 cut(s) 348, 1043
BstSFI CTRYAG 1 cut(s) 1086
BstV1I GCAGC 6 cut(s) 698, 893, 983, 1007, 1190, 1273
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 3 cut(s) 76, 112, 579
BtsI GCAGTG 2 cut(s) 61, 882
BtsIMutI CAGTG 2 cut(s) 61, 882
Cac8I GCNNGC 2 cut(s) 762, 1090
CfoI GCGC 2 cut(s) 148, 1307
Cfr13I GGNCC 1 cut(s) 1040
CseI GACGC 2 cut(s) 467, 1199
Csp6I GTAC 1 cut(s) 1298
CviAII CATG 6 cut(s) 247, 518, 632, 675, 731, 1265
CviQI GTAC 1 cut(s) 1298
DdeI CTNAG 2 cut(s) 690, 721
DpnI GATC 5 cut(s) 276, 285, 396, 963, 1282
DpnII GATC 5 cut(s) 274, 283, 394, 961, 1280
Eam1104I CTCTTC 2 cut(s) 1131, 1266
EarI CTCTTC 2 cut(s) 1131, 1266
Eco147I AGGCCT 1 cut(s) 416
Eco32I GATATC 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 1040
Eco57I CTGAAG 2 cut(s) 1058, 1116
Eco88I CYCGRG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 348, 1043
EcoRV GATATC 1 cut(s) 770
FaeI CATG 6 cut(s) 250, 521, 635, 678, 734, 1268
FalI AAGNNNNNCTT 8 cut(s) 985, 1017, 1167, 1199, 1209, 1241, 1229, 1261
FaqI GGGAC 1 cut(s) 401
FatI CATG 6 cut(s) 246, 517, 631, 674, 730, 1264
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 3 cut(s) 534, 547, 579
Fnu4HI GCNGC 7 cut(s) 687, 882, 997, 1021, 1142, 1179, 1262
FokI GGATG 3 cut(s) 83, 99, 586
Fsp4HI GCNGC 7 cut(s) 687, 882, 997, 1021, 1142, 1179, 1262
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 147, 1306
GluI GCNGC 7 cut(s) 687, 882, 997, 1021, 1142, 1179, 1262
GsaI CCCAGC 1 cut(s) 926
HaeIII GGCC 1 cut(s) 416
HapII CCGG 1 cut(s) 1055
HgaI GACGC 2 cut(s) 467, 1199
HhaI GCGC 2 cut(s) 148, 1307
Hin1I GRCGYC 1 cut(s) 1191
Hin1II CATG 6 cut(s) 250, 521, 635, 678, 734, 1268
Hin6I GCGC 2 cut(s) 146, 1305
HinP1I GCGC 2 cut(s) 146, 1305
HincII GTYRAC 2 cut(s) 298, 457
HindII GTYRAC 2 cut(s) 298, 457
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 7 cut(s) 20, 192, 209, 299, 522, 817, 913
HpaII CCGG 1 cut(s) 1055
Hpy166II GTNNAC 7 cut(s) 98, 298, 457, 535, 548, 580, 1102
Hpy188I TCNGA 6 cut(s) 279, 640, 789, 939, 1009, 1135
Hpy188III TCNNGA 9 cut(s) 48, 152, 217, 272, 308, 754, 1055, 1187, 1246
Hpy8I GTNNAC 7 cut(s) 98, 298, 457, 535, 548, 580, 1102
HpyAV CCTTC 3 cut(s) 177, 348, 427
HpyCH4III ACNGT 2 cut(s) 1106, 1121
HpyCH4IV ACGT 1 cut(s) 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 881, 1085, 1147
HpyF3I CTNAG 2 cut(s) 690, 721
HpySE526I ACGT 1 cut(s) 699
Hsp92I GRCGYC 1 cut(s) 1191
Hsp92II CATG 6 cut(s) 250, 521, 635, 678, 734, 1268
HspAI GCGC 2 cut(s) 146, 1305
Kpn2I TCCGGA 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 5 cut(s) 274, 283, 394, 961, 1280
LguI GCTCTTC 1 cut(s) 1131
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 6 cut(s) 698, 893, 983, 1007, 1190, 1273
LweI GCATC 4 cut(s) 713, 852, 883, 1137
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 3 cut(s) 601, 941, 1031
MalI GATC 5 cut(s) 276, 285, 396, 963, 1282
MboI GATC 5 cut(s) 274, 283, 394, 961, 1280
MboII GAAGA 6 cut(s) 165, 368, 802, 1124, 1148, 1283
MluCI AATT 9 cut(s) 462, 748, 783, 802, 931, 957, 970, 1203, 1312
MlyI GAGTC 3 cut(s) 218, 293, 811
MroI TCCGGA 1 cut(s) 1054
MseI TTAA 4 cut(s) 501, 585, 858, 1028
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 1 cut(s) 1055
MspR9I CCNGG 2 cut(s) 350, 1045
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 2 cut(s) 350, 1045
MwoI GCNNNNNNNGC 4 cut(s) 413, 881, 1085, 1147
NdeII GATC 5 cut(s) 274, 283, 394, 961, 1280
NlaIII CATG 6 cut(s) 250, 521, 635, 678, 734, 1268
NlaIV GGNNCC 1 cut(s) 1042
NmuCI GTSAC 2 cut(s) 941, 1031
NspI RCATGY 2 cut(s) 678, 1268
NspV TTCGAA 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 1131
PctI GAATGC 1 cut(s) 847
PfeI GAWTC 4 cut(s) 20, 192, 522, 913
PkrI GCNGC 7 cut(s) 688, 883, 998, 1022, 1143, 1180, 1263
PleI GAGTC 3 cut(s) 217, 293, 811
PpsI GAGTC 3 cut(s) 217, 293, 811
Ppu21I YACGTR 1 cut(s) 700
PpuMI RGGWCCY 1 cut(s) 1040
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 2 cut(s) 348, 1043
PspFI CCCAGC 1 cut(s) 922
PspGI CCWGG 2 cut(s) 348, 1043
PspN4I GGNNCC 1 cut(s) 1042
PspPI GGNCC 1 cut(s) 1040
PspPPI RGGWCCY 1 cut(s) 1040
PspXI VCTCGAGB 1 cut(s) 323
PstI CTGCAG 1 cut(s) 1090
RsaI GTAC 1 cut(s) 1299
RsaNI GTAC 1 cut(s) 1298
RseI CAYNNNNRTG 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 1131
SaqAI TTAA 4 cut(s) 501, 585, 858, 1028
SatI GCNGC 7 cut(s) 687, 882, 997, 1021, 1142, 1179, 1262
Sau3AI GATC 5 cut(s) 274, 283, 394, 961, 1280
Sau96I GGNCC 1 cut(s) 1040
SchI GAGTC 3 cut(s) 218, 293, 811
ScrFI CCNGG 2 cut(s) 350, 1045
SfaNI GCATC 4 cut(s) 713, 852, 883, 1137
SfcI CTRYAG 1 cut(s) 1086
Sfr274I CTCGAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 379
SinI GGWCC 1 cut(s) 1040
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 4 cut(s) 150, 323, 431, 1226
SmoI CTYRAG 4 cut(s) 150, 323, 431, 1226
Sse9I AATT 9 cut(s) 462, 748, 783, 802, 931, 957, 970, 1203, 1312
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 2 cut(s) 370, 1142
SspMI CTAG 1 cut(s) 26
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 348, 1043
TaaI ACNGT 2 cut(s) 1106, 1121
TaiI ACGT 1 cut(s) 702
TaqI TCGA 9 cut(s) 47, 182, 307, 324, 379, 561, 755, 766, 916
TaqII GACCGA 1 cut(s) 552
TasI AATT 9 cut(s) 462, 748, 783, 802, 931, 957, 970, 1203, 1312
TatI WGTACW 1 cut(s) 1297
TauI GCSGC 1 cut(s) 1144
TfiI GAWTC 4 cut(s) 20, 192, 522, 913
Tru1I TTAA 4 cut(s) 501, 585, 858, 1028
Tru9I TTAA 4 cut(s) 501, 585, 858, 1028
TscAI CASTG 2 cut(s) 61, 882
TseFI GTSAC 2 cut(s) 941, 1031
TseI GCWGC 6 cut(s) 686, 881, 996, 1020, 1178, 1261
Tsp45I GTSAC 2 cut(s) 941, 1031
TspDTI ATGAA 4 cut(s) 101, 159, 263, 1125
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 61, 882
VpaK11BI GGWCC 1 cut(s) 1040
XapI RAATTY 2 cut(s) 748, 783
XceI RCATGY 2 cut(s) 678, 1268
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 3 cut(s) 534, 547, 579
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.