Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Forward (+)

66943 .. 67407

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002105.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgagtatgatgtacaagattgttacaaatgcccttaaagatgcaggtctttctgatcagtatcatccacaagattatttgaacttttactgtcttggtaagtgtgaacctccatcttcgaaaggttcatctgaagctaatcagtcatttgacaatcgtaccttggcatcagcccaaaagtttcgtcggtttatgatctatgttcatgccaaaggaatgattgttgatgatgagtttgtaatcatgggttctgcaaatattaaccaaagatcaatggatggttcaagggacacagaaattgctatgggtgcttaccaaccacaccatacatgggcagctctaaaaaatcttcatccacatggccaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

123

Amino Acids

13.86

Weight (kDa)

7.01

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	14, 160
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	82, 285
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	137, 338
AluI	AGCT	2 cut(s)	137, 338
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsuII	TTCGAA	1 cut(s)	119
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BalI	TGGCCA	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	2 cut(s)	121, 272
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	31, 176
Bpu14I	TTCGAA	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	64, 283, 352
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	347
BshFI	GGCC	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	55, 195, 269
BspANI	GGCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	55, 195, 269
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	64, 283, 352
BstKTI	GATC	3 cut(s)	58, 198, 272
BstMBI	GATC	3 cut(s)	55, 195, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	64, 283, 352
BveI	ACCTGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	13, 159
CviAII	CATG	4 cut(s)	206, 244, 330, 359
CviJI	RGCY	4 cut(s)	137, 173, 338, 363
CviKI_1	RGCY	4 cut(s)	137, 173, 338, 363
CviQI	GTAC	2 cut(s)	13, 159
DpnI	GATC	3 cut(s)	57, 197, 271
DpnII	GATC	3 cut(s)	55, 195, 269
EaeI	YGGCCR	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	209, 247, 333, 362
FaiI	YATR	9 cut(s)	8, 194, 201, 207, 245, 305, 327, 331, 360
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	205, 243, 329, 358
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	3 cut(s)	51, 290, 339
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	209, 247, 333, 362
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	55, 133
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	44, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
Hsp92II	CATG	4 cut(s)	209, 247, 333, 362
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 195, 269
LpnPI	CCDG	2 cut(s)	30, 350
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	2 cut(s)	31, 176
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	57, 197, 271
MboI	GATC	3 cut(s)	55, 195, 269
MboII	GAAGA	2 cut(s)	108, 341
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	363
MnlI	CCTC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	2 cut(s)	36, 261
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	55, 195, 269
NlaIII	CATG	4 cut(s)	209, 247, 333, 362
NspV	TTCGAA	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
RsaI	GTAC	2 cut(s)	14, 160
RsaNI	GTAC	2 cut(s)	13, 159
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	36, 261
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	55, 195, 269
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	7 cut(s)	49, 112, 127, 139, 164, 340, 369
SfaNI	GCATC	2 cut(s)	31, 176
SfuI	TTCGAA	1 cut(s)	119
SgeI	CNNG	9 cut(s)	28, 57, 83, 107, 175, 218, 256, 297, 342
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	297
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	36, 261
Tru9I	TTAA	2 cut(s)	36, 261
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	117, 194, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.