RchiOBHm_Chr7g0221011

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
41926240 .. 41936680
10441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19780

Sequence Viewer

Length: 1923 bp
ATGAAAATGGGGAATGAGGATCACCATGAATCTCCAACCCCAACAAATGAAGGTGAGAGTTCTAAAGAACATATTATCCTGCATGGTGAGCTAGATTTATGGATTATAGAAGCTAAATCTCTTCCAAATATGGATTTACCTTCAGAAAGAATAAGAAAGTGTTTTACCATGTTTGGAACTTGCTCTGCTCCTTTTGGAAATCGGTCTACTACTAAAGCTCTTTCTGGAAAACGGCCTGCAACTATTACAAGTGACCCTTATGTTTCTGTTTGCCTAGCAGGAGCTACTGTAGCTCAGACTAGAGTAATTTCAAATAGTGAAAATCCTTCATGGGAAGAACATTTCTGTGTGCCTGTTGCTCACCCTATTATGAAGGTGGAGTTTCATGTTAAGGATAATGATGTTCTTGGGGCTGAACTTATTGGAGTAGTTGAAATATCTGTTGATAAAATCATTTCGGGAAATACAATTAATGATTGGTTTCCCATCATTGGTAATCCTGGAAATTGCTTGAAACCTTTTCCTGAATTGCATGTTTCTGTTCAGTTTAAGCCAGTTGAAAACAACCCTCTATATAAGAATGGTGTTGGTGTTGGGCCAGAATATAAAGGAGTTCCTAATACATATTTTCCACTTCGCAAAGGAGGGAGTGTCACTTTATATCAAGATGCTCATGTACCTCATGATATGTTACCTGAAATTTTACTAGATGGTGGTACAGTTTTTCAGCAAAGAAAATGTTGGGAAGAAATATGTCATGCTATTTTGGAAGCTCAACATCTTATATATATTATAGGGTGGTCTGTATACCATCGTGTCAAGCTTGTAAGGGAACCAACAAAGCCACTACCCTCTGGAGGAGAAATGGAACTCGGAGAGTTGCTAAAATATAAGTCGCAAGAAGGGATCCGGGTTGTTTTGTTAATTTGGGATGATAAAACTTCGCACGACAAGTTTCTATTAAAAACAGAAGGTGTCATGGCAACACATGATGAGGAAACAAAAAAGTTTTTCAAACATTCTAGTGTTCATTGTGTGCTTTCTCCTCGTTATGCAAGCAATAAACTTAGCATTTTCAAGCAACAGGTTGTGGGAACTCTTTTTACGCATCATCAGAAGTGTGTGATTCTTGACACAGCTTCTGGGAGTAACAGGAAAATAACTGCTTTCATTGGTGGTCTTGATTTATGTGATGGCCGATATGATACTCCTGAGCATAGACTATTTCGTGAACTTGACACAGTCTTTGAAAATGATATTCATAACCCTACATTTCCTACGAACACTTATGGCCCAAGAGAACCTTGGCATGATTTACACTGTAAAGTTGAGGGTCCTGCTGCATATGATATATTAACAAATTTTGAGCAAAGATGGAAAAAAGCGAAAAAGCGTGACTTCAAACTGAAAAAAGTCACTAATAAGCATGATGATGCCTTGATAAGGTTAGATCGTGTCTCATGGATAGTCACTCCAACTTCTGATCATAATGGTGATGAAAAAGTGCGTGTTAGCAATGAAGAAGATCGTGAAAACTGGCATGTACAGGTATTCAGGTCAATAGATTCAGGCTCTGTGAAGGGGTTTCCAAAAGGTGTCCAAGATGCTGAGGTTCAGAATCTTATTTGCGGAAAGAATTTAAAAATTGACAAGAGTATCCATGTTGCATATATCAAGGCCATAAGATCAGCTCAACACTTTATATACATTGAAAATCAGTATTTTGTTGGATCTTCGTATTATTGGCCTACATACAAACATGCAGGTGCAGATAACTTGGTCCCAATGGAACTAGCTCTGAAAATAGCTAGCAAAATCAAGGCAAATGAACGTTTCTCAGTGTATATAGTAATACCTATGTGGCCAGAAGGTGTTCCAACCACCTCGTCTGTTCAAGAAATTTTATATTGGCAGGTGAGATGA

Protein Analysis

640

Amino Acids

72.59

Weight (kDa)

6.75

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 30 - 162 1.1e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1754, 1903
Acc36I ACCTGC 2 cut(s) 1754, 1903
AccI GTMKAC 2 cut(s) 206, 807
AciI CCGC 1 cut(s) 1629
AclI AACGTT 1 cut(s) 1831
AclWI GGATC 4 cut(s) 27, 901, 914, 1738
AcoI YGGCCR 2 cut(s) 1195, 1862
AcsI RAATTY 4 cut(s) 699, 1360, 1636, 1899
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 3 cut(s) 678, 718, 1545
AfiI CCNNNNNNNGG 3 cut(s) 491, 857, 1443
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
Alw26I GTCTC 1 cut(s) 1462
AlwI GGATC 4 cut(s) 27, 901, 914, 1738
AlwNI CAGNNNCTG 2 cut(s) 1142, 1574
AoxI GGCC 7 cut(s) 233, 596, 1195, 1291, 1677, 1745, 1862
ApeKI GCWGC 1 cut(s) 1340
ApoI RAATTY 4 cut(s) 699, 1360, 1636, 1899
ArsI GACNNNNNNTTYG 2 cut(s) 1229, 1261
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 1 cut(s) 1872
AspS9I GGNCC 4 cut(s) 596, 1292, 1334, 1780
AsuC2I CCSGG 1 cut(s) 911
AsuHPI GGTGA 5 cut(s) 14, 65, 98, 353, 1505
AsuNHI GCTAGC 1 cut(s) 1808
AvaII GGWCC 2 cut(s) 1334, 1780
BaeI ACNNNNGTAYC 2 cut(s) 1639, 1672
BalI TGGCCA 1 cut(s) 1864
BamHI GGATCC 1 cut(s) 906
BbvCI CCTCAGC 1 cut(s) 1608
BbvI GCAGC 1 cut(s) 1327
BccI CCATC 5 cut(s) 494, 704, 819, 1187, 1368
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 1667
BclI TGATCA 1 cut(s) 1483
BcnI CCSGG 1 cut(s) 911
BcoDI GTCTC 1 cut(s) 1462
BfaI CTAG 7 cut(s) 92, 275, 300, 707, 1023, 1793, 1809
BfmI CTRYAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 1754, 1903
BfuI GTATCC 1 cut(s) 1667
BisI GCNGC 1 cut(s) 1341
BlsI GCNGC 1 cut(s) 1342
Bme1390I CCNGG 2 cut(s) 501, 911
Bme18I GGWCC 2 cut(s) 1334, 1780
BmgT120I GGNCC 4 cut(s) 596, 1292, 1334, 1780
BmiI GGNNCC 4 cut(s) 834, 908, 1335, 1782
BmrFI CCNGG 2 cut(s) 501, 911
BmsI GCATC 4 cut(s) 658, 1117, 1423, 1594
BmtI GCTAGC 1 cut(s) 1812
BpmI CTGGAG 1 cut(s) 876
Bpu10I CCTNAGC 2 cut(s) 1212, 1608
BpuMI CCSGG 1 cut(s) 911
BsaJI CCNNGG 1 cut(s) 1304
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 636, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 857, 1443
Bse1I ACTGG 2 cut(s) 554, 1541
Bse3DI GCAATG 1 cut(s) 1522
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 1304
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 3 cut(s) 491, 857, 1443
BseMI GCAATG 1 cut(s) 1522
BseMII CTCAG 4 cut(s) 308, 1203, 1599, 1851
BseNI ACTGG 2 cut(s) 554, 1541
BseRI GAGGAG 2 cut(s) 873, 1035
BseXI GCAGC 1 cut(s) 1327
BsgI GTGCAG 1 cut(s) 1788
BshFI GGCC 7 cut(s) 235, 598, 1197, 1293, 1679, 1747, 1864
BsiSI CCGG 1 cut(s) 910
BslFI GGGAC 1 cut(s) 1766
BslI CCNNNNNNNGG 3 cut(s) 491, 857, 1443
BsmAI GTCTC 1 cut(s) 1462
BsmFI GGGAC 1 cut(s) 1766
BsnI GGCC 7 cut(s) 235, 598, 1197, 1293, 1679, 1747, 1864
Bsp1407I TGTACA 1 cut(s) 1543
Bsp143I GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
BspACI CCGC 1 cut(s) 1629
BspANI GGCC 7 cut(s) 235, 598, 1197, 1293, 1679, 1747, 1864
BspCNI CTCAG 4 cut(s) 307, 1204, 1600, 1850
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 4 cut(s) 834, 908, 1335, 1782
BspMI ACCTGC 2 cut(s) 1754, 1903
BspOI GCTAGC 1 cut(s) 1812
BspPI GGATC 4 cut(s) 27, 901, 914, 1738
BsrDI GCAATG 1 cut(s) 1522
BsrGI TGTACA 1 cut(s) 1543
BsrI ACTGG 2 cut(s) 554, 1541
BssECI CCNNGG 1 cut(s) 1304
BssMI GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
BssNAI GTATAC 1 cut(s) 808
BssT1I CCWWGG 1 cut(s) 1304
Bst1107I GTATAC 1 cut(s) 808
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 4 cut(s) 289, 721, 1243, 1322
Bst6I CTCTTC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 1543
BstC8I GCNNGC 3 cut(s) 237, 1057, 1810
BstDEI CTNAG 5 cut(s) 294, 1067, 1212, 1608, 1837
BstENI CCTNNNNNAGG 1 cut(s) 1441
BstF5I GGATG 1 cut(s) 937
BstKTI GATC 7 cut(s) 22, 909, 1453, 1486, 1528, 1688, 1733
BstMAI GTCTC 1 cut(s) 1462
BstMBI GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
BstMWI GCNNNNNNNGC 2 cut(s) 88, 290
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 3 cut(s) 536, 1544, 1763
BstSCI CCNGG 2 cut(s) 499, 909
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 1327
BstX2I RGATCY 2 cut(s) 906, 1730
BstYI RGATCY 2 cut(s) 906, 1730
BstZ17I GTATAC 1 cut(s) 808
BsuI GTATCC 1 cut(s) 1667
BsuRI GGCC 7 cut(s) 235, 598, 1197, 1293, 1679, 1747, 1864
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 2 cut(s) 1318, 1845
BveI ACCTGC 2 cut(s) 1754, 1903
Cac8I GCNNGC 3 cut(s) 237, 1057, 1810
CaiI CAGNNNCTG 2 cut(s) 1142, 1574
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 4 cut(s) 596, 1292, 1334, 1780
Csp6I GTAC 3 cut(s) 677, 717, 1544
CviQI GTAC 3 cut(s) 677, 717, 1544
DdeI CTNAG 5 cut(s) 294, 1067, 1212, 1608, 1837
DpnI GATC 7 cut(s) 21, 908, 1452, 1485, 1527, 1687, 1732
DpnII GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
DraI TTTAAA 1 cut(s) 1641
EaeI YGGCCR 2 cut(s) 1195, 1862
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 1304
Eco47I GGWCC 2 cut(s) 1334, 1780
Eco57I CTGAAG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 1441
EcoO109I RGGNCCY 1 cut(s) 1334
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 1304
ErhI CCWWGG 1 cut(s) 1304
FalI AAGNNNNNCTT 6 cut(s) 241, 273, 1288, 1320, 1382, 1414
FaqI GGGAC 1 cut(s) 1766
FauNDI CATATG 1 cut(s) 1345
FbaI TGATCA 1 cut(s) 1483
FblI GTMKAC 2 cut(s) 206, 807
Fnu4HI GCNGC 1 cut(s) 1341
FokI GGATG 1 cut(s) 944
Fsp4HI GCNGC 1 cut(s) 1341
FspBI CTAG 7 cut(s) 92, 275, 300, 707, 1023, 1793, 1809
GluI GCNGC 1 cut(s) 1341
GsuI CTGGAG 1 cut(s) 876
HaeIII GGCC 7 cut(s) 235, 598, 1197, 1293, 1679, 1747, 1864
HapII CCGG 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 4 cut(s) 29, 1126, 1565, 1618
HpaII CCGG 1 cut(s) 910
HphI GGTGA 5 cut(s) 14, 65, 98, 353, 1505
Hpy166II GTNNAC 3 cut(s) 207, 808, 1232
Hpy188I TCNGA 7 cut(s) 145, 297, 875, 1116, 1483, 1617, 1800
Hpy8I GTNNAC 3 cut(s) 207, 808, 1232
HpyAV CCTTC 8 cut(s) 44, 150, 336, 367, 896, 965, 1573, 1862
HpyCH4III ACNGT 4 cut(s) 289, 721, 1243, 1322
HpyCH4IV ACGT 1 cut(s) 1831
HpyCH4V TGCA 8 cut(s) 82, 239, 532, 1055, 1343, 1667, 1763, 1769
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 290
HpyF3I CTNAG 5 cut(s) 294, 1067, 1212, 1608, 1837
HpySE526I ACGT 1 cut(s) 1831
Ksp22I TGATCA 1 cut(s) 1483
Kzo9I GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
LmnI GCTCC 2 cut(s) 193, 281
Lsp1109I GCAGC 1 cut(s) 1327
LweI GCATC 4 cut(s) 658, 1117, 1423, 1594
MaeI CTAG 7 cut(s) 92, 275, 300, 707, 1023, 1793, 1809
MaeII ACGT 1 cut(s) 1831
MaeIII GTNAC 7 cut(s) 251, 652, 690, 1148, 1394, 1414, 1468
MalI GATC 7 cut(s) 21, 908, 1452, 1485, 1527, 1687, 1732
MboI GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
MboII GAAGA 6 cut(s) 113, 347, 758, 1532, 1535, 1725
MflI RGATCY 2 cut(s) 906, 1730
MlsI TGGCCA 1 cut(s) 1864
MluNI TGGCCA 1 cut(s) 1864
MmeI TCCRAC 4 cut(s) 59, 1499, 1708, 1901
Mox20I TGGCCA 1 cut(s) 1864
MroXI GAANNNNTTC 1 cut(s) 1872
MscI TGGCCA 1 cut(s) 1864
MseI TTAA 7 cut(s) 390, 471, 549, 923, 962, 1355, 1640
MslI CAYNNNNRTG 5 cut(s) 345, 1023, 1431, 1491, 1764
Msp20I TGGCCA 1 cut(s) 1864
MspI CCGG 1 cut(s) 910
MspR9I CCNGG 2 cut(s) 501, 911
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 88, 290
NciI CCSGG 1 cut(s) 911
NdeI CATATG 1 cut(s) 1345
NdeII GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
NheI GCTAGC 1 cut(s) 1808
NlaIV GGNNCC 4 cut(s) 834, 908, 1335, 1782
NmuCI GTSAC 5 cut(s) 251, 652, 1394, 1414, 1468
NspI RCATGY 3 cut(s) 536, 1544, 1763
PagI TCATGA 1 cut(s) 682
PaqCI CACCTGC 2 cut(s) 1754, 1903
PdmI GAANNNNTTC 1 cut(s) 1872
PfeI GAWTC 4 cut(s) 29, 1126, 1565, 1618
PflFI GACNNNGTC 1 cut(s) 1241
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 1 cut(s) 1342
PpuMI RGGWCCY 1 cut(s) 1334
PshBI ATTAAT 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 1831
Psp5II RGGWCCY 1 cut(s) 1334
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 834, 908, 1335, 1782
PspPI GGNCC 4 cut(s) 596, 1292, 1334, 1780
PspPPI RGGWCCY 1 cut(s) 1334
PsrI GAACNNNNNNTAC 2 cut(s) 1087, 1119
PstNI CAGNNNCTG 2 cut(s) 1142, 1574
PsuI RGATCY 2 cut(s) 906, 1730
PsyI GACNNNGTC 1 cut(s) 1241
RsaI GTAC 3 cut(s) 678, 718, 1545
RsaNI GTAC 3 cut(s) 677, 717, 1544
RseI CAYNNNNRTG 5 cut(s) 345, 1023, 1431, 1491, 1764
SaqAI TTAA 7 cut(s) 390, 471, 549, 923, 962, 1355, 1640
SatI GCNGC 1 cut(s) 1341
Sau3AI GATC 7 cut(s) 19, 906, 1450, 1483, 1525, 1685, 1730
Sau96I GGNCC 4 cut(s) 596, 1292, 1334, 1780
ScrFI CCNGG 2 cut(s) 501, 911
SfaNI GCATC 4 cut(s) 658, 1117, 1423, 1594
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 2 cut(s) 1334, 1780
SmiMI CAYNNNNRTG 5 cut(s) 345, 1023, 1431, 1491, 1764
SsiI CCGC 1 cut(s) 1629
SspMI CTAG 7 cut(s) 92, 275, 300, 707, 1023, 1793, 1809
StyD4I CCNGG 2 cut(s) 499, 909
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 4 cut(s) 289, 721, 1243, 1322
TaiI ACGT 1 cut(s) 1834
TaqII GACCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 1543
TfiI GAWTC 4 cut(s) 29, 1126, 1565, 1618
Tru1I TTAA 7 cut(s) 390, 471, 549, 923, 962, 1355, 1640
Tru9I TTAA 7 cut(s) 390, 471, 549, 923, 962, 1355, 1640
TscAI CASTG 2 cut(s) 1325, 1845
TseFI GTSAC 5 cut(s) 251, 652, 1394, 1414, 1468
TseI GCWGC 1 cut(s) 1340
Tsp45I GTSAC 5 cut(s) 251, 652, 1394, 1414, 1468
TspRI CASTG 2 cut(s) 1325, 1845
Tth111I GACNNNGTC 1 cut(s) 1241
VpaK11BI GGWCC 2 cut(s) 1334, 1780
VspI ATTAAT 1 cut(s) 471
XagI CCTNNNNNAGG 1 cut(s) 1441
XapI RAATTY 4 cut(s) 699, 1360, 1636, 1899
XceI RCATGY 3 cut(s) 536, 1544, 1763
XcmI CCANNNNNNNNNTGG 1 cut(s) 1302
XmiI GTMKAC 2 cut(s) 206, 807
XmnI GAANNNNTTC 1 cut(s) 1872
XspI CTAG 7 cut(s) 92, 275, 300, 707, 1023, 1793, 1809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.