Rorug07G0199300

phospholipase D

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
17244263 .. 17245162
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0199300.1

Sequence Viewer

Length: 900 bp
ATGACGTCCAGGTTTGAAGTTGCTGCTACTAGAGAAGAGGAGGAGGCCGAACAGTTTCTTTGGTCTATGCTCGGAGACGAGTCGGAGTTAAACTTGGGTGTTGTTAGGGATGTCCTTTCTCACTGTGGGTATGAAGTTGAAAAGGCCTTGGATGCCCTACTTGAGTTATCTTCTTCCTCAAGTGAGACATGGTATTGTGTGGGAGATACTCACCAGAGTTATAAAGAGGTTCTTGCTGGTACTACTTCCAAAGCTCACCGGAGTACGAGCTCAGATAACCTCTCTCAGGTGGTGTTGGAATCTTTGTTCAAAAAATCTAAGAGGAGTCCTGAAAATGAAGAACCAAGAACCATGAATTCTTGGAAGAATAGTGTGAAGAAATTGCAAGAGTCATCGGGACCTGAGCTTGATGTTGCCATAGGAGCTGAATATGATGCATATAGAGGGACTGCAAAGCAGCACTGGGATTCAGTAACGTCCCAATATCAGAAAGCTGCAACTGCGTATTCAAACGGATCGCGGGCATACGCAGGTTACCTCTCTGAGCAGGCGAAGGTAAAGGCGAAATTGGCACGAGAGGCGGATGAGAAGGCAAGCCAGGAGATCTTCAAAGCTAGAAGCAAGGATAAGTGGATAAACAATGGTGTGATAACTATTGATTTGCATGGCCAGCATGTCAAACAAGCAATGAAGCTTTTGAAAATCCACCTTATGAAAGGAACCAATACGCAGTCGCTTCGGCACCTCAGGGTTATCACCGGCTGTGGTGCAGGAAAGTCTATTCTGAAACAATCTGTCATCAGACTCATCCAGAACGAAGGTATTAAATGGAGCGAAGAGAATCCGGGAGCGGTATTAATCAAGCTAGCTTCACAGAGACAACTTCAGGTTCATGGATAG

Protein Analysis

299

Amino Acids

33.3

Weight (kDa)

8.27

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 144 - 206 3.5e-14 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 741
AccBSI CCGCTC 1 cut(s) 851
AccII CGCG 1 cut(s) 520
AciI CCGC 3 cut(s) 520, 581, 851
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 869
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 241, 265
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 6 cut(s) 17, 140, 310, 510, 610, 700
AjnI CCWGG 2 cut(s) 8, 597
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 9 cut(s) 254, 270, 406, 425, 494, 614, 694, 865, 869
AluI AGCT 9 cut(s) 254, 270, 406, 425, 494, 614, 694, 865, 869
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 3 cut(s) 69, 179, 871
AlwI GGATC 1 cut(s) 523
AoxI GGCC 3 cut(s) 45, 144, 667
ApeKI GCWGC 3 cut(s) 23, 457, 494
ApoI RAATTY 1 cut(s) 355
AseI ATTAAT 1 cut(s) 857
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 3 cut(s) 203, 248, 748
AsuNHI GCTAGC 1 cut(s) 865
AvaII GGWCC 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 746
BalI TGGCCA 1 cut(s) 669
BanI GGYRCC 1 cut(s) 741
BanII GRGCYC 1 cut(s) 272
BauI CACGAG 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 10, 469, 481
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 10, 599
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 3 cut(s) 69, 179, 871
BfaI CTAG 3 cut(s) 30, 615, 866
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 603
BisI GCNGC 3 cut(s) 24, 458, 495
BlsI GCNGC 3 cut(s) 25, 459, 496
Bme1390I CCNGG 3 cut(s) 10, 599, 846
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 3 cut(s) 399, 721, 743
BmrFI CCNGG 3 cut(s) 10, 599, 846
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 142, 424
BmtI GCTAGC 1 cut(s) 869
BmuI ACTGGG 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 163, 182
BpuMI CCSGG 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 467
Bse21I CCTNAGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 2 cut(s) 10, 599
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 4 cut(s) 115, 157, 589, 807
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 5 cut(s) 285, 299, 393, 534, 760
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 3 cut(s) 53, 56, 337
BseXI GCAGC 3 cut(s) 10, 469, 481
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 520
BshFI GGCC 3 cut(s) 47, 146, 669
BshNI GGYRCC 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 3 cut(s) 259, 759, 845
BslFI GGGAC 3 cut(s) 411, 460, 463
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 69, 179, 871
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 3 cut(s) 411, 460, 463
BsnI GGCC 3 cut(s) 47, 146, 669
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 515, 603
BspACI CCGC 3 cut(s) 520, 581, 851
BspANI GGCC 3 cut(s) 47, 146, 669
BspCNI CTCAG 5 cut(s) 284, 298, 394, 535, 759
BspFNI CGCG 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 399, 721, 743
BspMI ACCTGC 1 cut(s) 521
BspOI GCTAGC 1 cut(s) 869
BspPI GGATC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 515, 603
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 10, 599
Bst4CI ACNGT 2 cut(s) 54, 125
Bst6I CTCTTC 2 cut(s) 30, 831
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 522, 549, 595, 671, 867
BstDEI CTNAG 6 cut(s) 271, 285, 318, 402, 543, 746
BstEII GGTNACC 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 4 cut(s) 115, 157, 589, 807
BstFNI CGCG 1 cut(s) 520
BstKTI GATC 2 cut(s) 518, 606
BstMAI GTCTC 3 cut(s) 69, 179, 871
BstMBI GATC 2 cut(s) 515, 603
BstMWI GCNNNNNNNGC 6 cut(s) 152, 422, 500, 569, 578, 670
BstNI CCWGG 2 cut(s) 10, 599
BstNSI RCATGY 1 cut(s) 677
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 8, 597, 844
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 3 cut(s) 10, 469, 481
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
Bsu36I CCTNAGG 1 cut(s) 746
BsuRI GGCC 3 cut(s) 47, 146, 669
BtsCI GGATG 4 cut(s) 115, 157, 589, 807
BtsIMutI CAGTG 2 cut(s) 121, 460
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 522, 549, 595, 671, 867
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 240, 264
CviAII CATG 5 cut(s) 189, 352, 665, 674, 893
CviQI GTAC 2 cut(s) 240, 264
DdeI CTNAG 6 cut(s) 271, 285, 318, 402, 543, 746
DpnI GATC 2 cut(s) 517, 605
DpnII GATC 2 cut(s) 515, 603
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 30, 831
EarI CTCTTC 2 cut(s) 30, 831
EciI GGCGGA 1 cut(s) 596
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 869
Eco81I CCTNAGG 1 cut(s) 746
Eco91I GGTNACC 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 8, 597
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 5 cut(s) 192, 355, 668, 677, 896
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 3 cut(s) 411, 460, 463
FatI CATG 5 cut(s) 188, 351, 664, 673, 892
FauI CCCGC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 24, 458, 495
FokI GGATG 4 cut(s) 122, 164, 596, 794
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 24, 458, 495
FspBI CTAG 3 cut(s) 30, 615, 866
GluI GCNGC 3 cut(s) 24, 458, 495
HaeIII GGCC 3 cut(s) 47, 146, 669
HapII CCGG 3 cut(s) 259, 759, 845
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 192, 355, 668, 677, 896
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 80, 299, 325, 389, 467, 804, 841
HpaII CCGG 3 cut(s) 259, 759, 845
HphI GGTGA 3 cut(s) 203, 248, 748
Hpy188I TCNGA 7 cut(s) 74, 85, 274, 489, 544, 786, 803
Hpy188III TCNNGA 3 cut(s) 329, 396, 811
HpyAV CCTTC 3 cut(s) 547, 583, 812
HpyCH4III ACNGT 2 cut(s) 54, 125
HpyCH4IV ACGT 2 cut(s) 5, 476
HpyCH4V TGCA 6 cut(s) 385, 437, 452, 497, 664, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 422, 500, 569, 578, 670
HpyF3I CTNAG 6 cut(s) 271, 285, 318, 402, 543, 746
HpySE526I ACGT 2 cut(s) 5, 476
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 192, 355, 668, 677, 896
Kzo9I GATC 2 cut(s) 515, 603
LmnI GCTCC 3 cut(s) 422, 831, 848
Lsp1109I GCAGC 3 cut(s) 10, 469, 481
LweI GCATC 2 cut(s) 142, 424
MaeI CTAG 3 cut(s) 30, 615, 866
MaeII ACGT 2 cut(s) 5, 476
MaeIII GTNAC 2 cut(s) 472, 533
MalI GATC 2 cut(s) 517, 605
MbiI CCGCTC 1 cut(s) 851
MboI GATC 2 cut(s) 515, 603
MboII GAAGA 8 cut(s) 47, 162, 165, 350, 376, 388, 598, 848
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 3 cut(s) 355, 380, 566
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 4 cut(s) 89, 334, 398, 798
MmeI TCCRAC 2 cut(s) 63, 276
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 669
MseI TTAA 3 cut(s) 89, 825, 857
Msp20I TGGCCA 1 cut(s) 669
MspI CCGG 3 cut(s) 259, 759, 845
MspR9I CCNGG 3 cut(s) 10, 599, 846
MvaI CCWGG 2 cut(s) 10, 599
MvnI CGCG 1 cut(s) 520
MwoI GCNNNNNNNGC 6 cut(s) 152, 422, 500, 569, 578, 670
NciI CCSGG 1 cut(s) 846
NdeII GATC 2 cut(s) 515, 603
NheI GCTAGC 1 cut(s) 865
NlaIII CATG 5 cut(s) 192, 355, 668, 677, 896
NlaIV GGNNCC 3 cut(s) 399, 721, 743
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 677
PceI AGGCCT 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 299, 467, 841
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 3 cut(s) 25, 459, 496
PleI GAGTC 4 cut(s) 88, 333, 397, 798
PpsI GAGTC 4 cut(s) 88, 333, 397, 798
PpuMI RGGWCCY 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 857
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 8, 597
PspEI GGTNACC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 8, 597
PspN4I GGNNCC 3 cut(s) 399, 721, 743
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 1 cut(s) 603
RsaI GTAC 2 cut(s) 241, 265
RsaNI GTAC 2 cut(s) 240, 264
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 89, 825, 857
SatI GCNGC 3 cut(s) 24, 458, 495
Sau3AI GATC 2 cut(s) 515, 603
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 4 cut(s) 89, 334, 398, 798
ScrFI CCNGG 3 cut(s) 10, 599, 846
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 142, 424
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 161, 178
SmoI CTYRAG 2 cut(s) 161, 178
Sse9I AATT 3 cut(s) 355, 380, 566
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 520, 581, 851
SspMI CTAG 3 cut(s) 30, 615, 866
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 8, 597, 844
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 54, 125
TaiI ACGT 2 cut(s) 8, 479
TasI AATT 3 cut(s) 355, 380, 566
TfiI GAWTC 3 cut(s) 299, 467, 841
Tru1I TTAA 3 cut(s) 89, 825, 857
Tru9I TTAA 3 cut(s) 89, 825, 857
TscAI CASTG 2 cut(s) 128, 467
TseI GCWGC 3 cut(s) 23, 457, 494
TspDTI ATGAA 6 cut(s) 147, 351, 368, 704, 728, 881
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 2 cut(s) 128, 467
VpaK11BI GGWCC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 857
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 30, 615, 866
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.