Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8361155 .. 8362575

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTAGCTGTATATTTCGAATCTGCAATCATGCTCCTATTGTTAAACTATCCGTTAATGTTTATGCAGGTGCGAATAATTTGATTCCCATGGAAATTGCCATTAAGATTGCTGAAAAAATCAGAGCAAACCAGAGATTCGCTGCGTATTTTGTTATTCTAATGTGTCCAGAAGGTGTTCCAACTGGTGCAGCAACACAAAGAATTCTATTTTGGCAGGCATTTAGTCAAAAAAGCAGGCAATTTATGATTTATGTTCATTTGAAAGGTATGATAGTCGATGACAAGTTGGTAATACTGGGTTCCGCGCATATCAATCAGCGCTCTATGGAAGGGACGATAGACACTGAAATGGCAATGGGGTCCTACCAACCTCATCATGCATGGGCAAGAAATCATTGTAGTCCTCTCGGGACAGATATTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

9.02

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35790 AT4G35790 AT4G35790
fragaria_vesca	FvH4_1g11000 FvH4_1g11020 FvH4_1g11020 FvH4_2g37900 FvH4_5g01272 FvH4_5g28780 FvH4_5g28800 FvH4_7g08510 FvH4_7g08510
malus_domestica	MD02G1123100.v1.1 MD08G1149700.v1.1 MD08G1237200.v1.1 MD15G1006400.v1.1 MD15G1237100.v1.1
prunus_persica	Prupe.1G359000_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.1G574700_v2.0.a1 Prupe.7G175400_v2.0.a1
pyrus_communis	pycom02g09600 pycom15g00480 pycom15g21090
rosa_chinensis	RchiOBHm_Chr2g0098271 RchiOBHm_Chr6g0303711 RchiOBHm_Chr7g0221001 RchiOBHm_Chr7g0221011
rosa_laevigata	RLG00000002185 RLG00000011053 RLG00000016781
rosa_multiflora	Rmu_co8414259.1_g000001 Rmu_co8436567.1_g000002 Rmu_co8452585.1_g000001 Rmu_sc0001024.1_g000003 Rmu_sc0002105.1_g000010 Rmu_sc0002105.1_g000018 Rmu_sc0002105.1_g000020 Rmu_sc0009922.1_g000005 Rmu_sc0039265.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144090 Rroxscaffold_3G00238820 Rroxscaffold_7G00164460
rosa_rugosa	Rorug02G0071800 Rorug06G0324200 Rorug07G0199200 Rorug07G0199300 Rorug07G0199400 Rorug07G0199500 Rorug07G0199600
rosa_samantha	Rh1CG003000 Rh2AG118900 Rh2BG121800 Rh2CG123400 Rh2DG123500 Rh6AG438500 Rh6BG464500 Rh6CG450800 Rh6DG437500 Rh7AG339200 Rh7BG329900 Rh7CG357200 Rh7DG337900
rosa_wichuraiana	Rw2G009320 Rw6G037950 Rw7G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	59
AccII	CGCG	1 cut(s)	308
AciI	CCGC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	204
AfeI	AGCGCT	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	143, 191
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	310, 324
AspS9I	GGNCC	1 cut(s)	363
AsuII	TTCGAA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	130, 203
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	144, 192
BlsI	GCNGC	2 cut(s)	145, 193
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	2 cut(s)	304, 364
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	190, 303
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	190, 303
BseXI	GCAGC	2 cut(s)	130, 203
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	410
BslFI	GGGAC	2 cut(s)	349, 427
BsmFI	GGGAC	2 cut(s)	349, 427
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	304, 364
BspMI	ACCTGC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	190, 303
BssECI	CCNNGG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	219, 239
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	310, 324
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	130, 203
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	219, 239
CfoI	GCGC	2 cut(s)	310, 324
Cfr13I	GGNCC	1 cut(s)	363
CviAII	CATG	4 cut(s)	32, 91, 380, 384
CviJI	RGCY	1 cut(s)	9
CviKI_1	RGCY	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	35, 94, 383, 387
FaqI	GGGAC	2 cut(s)	349, 427
FatI	CATG	4 cut(s)	31, 90, 379, 383
Fnu4HI	GCNGC	2 cut(s)	144, 192
Fsp4HI	GCNGC	2 cut(s)	144, 192
GlaI	GCGC	2 cut(s)	309, 323
GluI	GCNGC	2 cut(s)	144, 192
HaeII	RGCGCY	1 cut(s)	325
HhaI	GCGC	2 cut(s)	310, 324
Hin1II	CATG	4 cut(s)	35, 94, 383, 387
Hin6I	GCGC	2 cut(s)	308, 322
HinP1I	GCGC	2 cut(s)	308, 322
HinfI	GANTC	3 cut(s)	21, 85, 138
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	170, 412
HpyAV	CCTTC	2 cut(s)	167, 326
HpyCH4V	TGCA	4 cut(s)	27, 68, 191, 383
Hsp92II	CATG	4 cut(s)	35, 94, 383, 387
HspAI	GCGC	2 cut(s)	308, 322
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	54, 146, 171, 183, 203, 223, 284
Lsp1109I	GCAGC	2 cut(s)	130, 203
MluCI	AATT	4 cut(s)	79, 96, 204, 242
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	384, 417
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	3 cut(s)	45, 57, 105
MslI	CAYNNNNRTG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	90
NlaIII	CATG	4 cut(s)	35, 94, 383, 387
NlaIV	GGNNCC	2 cut(s)	304, 364
NsiI	ATGCAT	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	21, 85, 138
PkrI	GCNGC	2 cut(s)	145, 193
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	304, 364
PspPI	GGNCC	1 cut(s)	363
PspPPI	RGGWCCY	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	45, 57, 105
SatI	GCNGC	2 cut(s)	144, 192
Sau96I	GGNCC	1 cut(s)	363
SetI	ASST	5 cut(s)	11, 73, 178, 271, 376
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	79, 96, 204, 242
SsiI	CCGC	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	2 cut(s)	19, 279
TasI	AATT	4 cut(s)	79, 96, 204, 242
TfiI	GAWTC	3 cut(s)	21, 85, 138
Tru1I	TTAA	3 cut(s)	45, 57, 105
Tru9I	TTAA	3 cut(s)	45, 57, 105
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	2 cut(s)	143, 191
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.