Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

13991979 .. 13994119

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22043.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATTGATGAGCCGGTATTTCCTTCAAGTAATGATATTTTCTGTAGTAAAGAAGCCAAACGGTGCAGCCTTCTCAATCTGGACACTAATGGAGCTGGTGATTTTGAGAGATGCTGTATTGAAGAACTCTCCATTTTTCAAATGTTCTTTTTGCGGCAAAAGATTCAGAGCAGCACTCAGAGAAATCAAGGAATTGGACTGGAAGCCAAAACCATGCTGAGCTACCGAGAAGATTGTGGAGATTTCAATATCACACTTCCATACCAGAATGATTTTGAGGTGGCACGATCTTCGTCAACCCATCTAAGTGATTTAACATTCTTGGGCTCTGCAAACGACGTTACAGTCATAGGTTGTGAATACTCTCATTTTGTGAGAGGGACAAACAAGGCACCACCGAACACCAACACCAACACCAACATTAGTCTGATTTATGCATTATTTTCTAGTAGTATTGACTGTTGCAGTTCTTCCATTCAGACTATTCCCAGAGGCCTCAGGTCTTCCTTTACTGAGGCAGAAAGGAGCATTACAAGAAACACGTATAGTCTAAGAGTGAAGCTGCCTAAGATAGGACGAAGAATCTTGTTTAATCACTCACCATTTGGCAGCGAAGCAAGAAGACTTGTTAAACTTGATGCAGTGAGTAAACTGGAAGCTTATGAGGGAATTGCAAAGACAAGATGGGAATTTGAGGACATCATAAATGGTAAAGGTCCCAGCCCGTACATCTCTGTCTCTCCGGTTAATCTGATTCTTGGTCTTGGCTCTTGTTTCTCAATTATGTTGTTTGTGATATCTTGGGTTTATTTGAGTGTGAAGAAACTATGGTTTATTCAGCTCAAAACCAATTTCTTCAAGAAAAATGGAGGGTTATTGTTAGAGCAGCATAGTGCTTCACATGGAGATGGAATGACAAGAATATATACAGCTGAGCAACTACAGATGGCTACTGACTGTTACCAAAAAAAATTACGTGATAAAGTAGTGGAGGGCCAAGTGGGGAGTTTTATAAATGAGATTATTGCTCTTGCCCAAATGAACCATGAAAATTTGGTGAAGTTCATGGGATGCTGTTTAGAGACTGATGCTCCTATTTTGGTTTATGAACTCGCCTCTAACAGAACCCTTTTCGACTACATCAATCTCACCAATGGGAAAGTTAAATTGCCTTGGAATGTCCTCTTAAAGATAGCCTCAGAATCTGCAGCTGCTCTTGCTTATATTCATTCTTCTTCGCAGGAGACGGCTCAAAACCCACTATCCATGGCAATGTTAAGTCTTCCAGCATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

433

Amino Acids

48.3

Weight (kDa)

7.48

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	312 - 412	2.5e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	322 - 412	5.9e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	689, 1051
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	5 cut(s)	27, 122, 140, 247, 859
AluBI	AGCT	7 cut(s)	95, 222, 562, 659, 841, 932, 1211
AluI	AGCT	7 cut(s)	95, 222, 562, 659, 841, 932, 1211
Alw26I	GTCTC	3 cut(s)	742, 1076, 1238
AlwNI	CAGNNNCTG	1 cut(s)	1205
AoxI	GGCC	2 cut(s)	493, 994
ApeKI	GCWGC	7 cut(s)	66, 171, 562, 609, 886, 1208, 1211
ApoI	RAATTY	2 cut(s)	689, 1051
AspS9I	GGNCC	2 cut(s)	716, 994
AsuHPI	GGTGA	4 cut(s)	110, 591, 1069, 1141
AvaII	GGWCC	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	3 cut(s)	495, 628, 1274
BbvI	GCAGC	7 cut(s)	78, 183, 549, 621, 898, 1198, 1220
BccI	CCATC	4 cut(s)	309, 678, 902, 940
BceAI	ACGGC	1 cut(s)	1263
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BcoDI	GTCTC	3 cut(s)	742, 1076, 1238
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	3 cut(s)	43, 941, 1206
BisI	GCNGC	8 cut(s)	67, 155, 172, 563, 610, 887, 1209, 1212
BlpI	GCTNAGC	2 cut(s)	218, 933
BlsI	GCNGC	8 cut(s)	68, 156, 173, 564, 611, 888, 1210, 1213
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	716, 994
BmiI	GGNNCC	2 cut(s)	393, 718
BmsI	GCATC	4 cut(s)	101, 628, 1061, 1078
BpiI	GAAGAC	3 cut(s)	495, 628, 1274
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu1102I	GCTNAGC	2 cut(s)	218, 933
BsaAI	YACGTR	2 cut(s)	543, 977
BsaJI	CCNNGG	2 cut(s)	1172, 1266
BsaWI	WCCGGW	1 cut(s)	742
BsaXI	ACNNNNNCTCC	2 cut(s)	1075, 1105
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	204, 657
Bse21I	CCTNAGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	1278
BseDI	CCNNGG	2 cut(s)	1172, 1266
BseGI	GGATG	1 cut(s)	1076
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	1278
BseMII	CTCAG	6 cut(s)	191, 209, 504, 511, 924, 1212
BseNI	ACTGG	2 cut(s)	204, 657
BseXI	GCAGC	7 cut(s)	78, 183, 549, 621, 898, 1198, 1220
BseYI	CCCAGC	1 cut(s)	719
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	495, 996
BshNI	GGYRCC	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	14, 743
BslFI	GGGAC	2 cut(s)	394, 702
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	3 cut(s)	742, 1076, 1238
BsmBI	CGTCTC	1 cut(s)	1238
BsmFI	GGGAC	2 cut(s)	394, 702
BsnI	GGCC	2 cut(s)	495, 996
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	287
Bsp1720I	GCTNAGC	2 cut(s)	218, 933
Bsp19I	CCATGG	1 cut(s)	1266
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	495, 996
BspCNI	CTCAG	6 cut(s)	190, 210, 505, 510, 925, 1211
BspLI	GGNNCC	2 cut(s)	393, 718
BspMAI	CTGCAG	1 cut(s)	1210
BspT107I	GGYRCC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	1278
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	204, 657
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	1172, 1266
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	1172, 1266
Bst4CI	ACNGT	4 cut(s)	63, 346, 461, 959
BstBAI	YACGTR	2 cut(s)	543, 977
BstDEI	CTNAG	9 cut(s)	177, 218, 305, 497, 513, 551, 567, 933, 1198
BstDSI	CCRYGG	1 cut(s)	1266
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	1076
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	3 cut(s)	742, 1076, 1238
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	1217
BstSFI	CTRYAG	3 cut(s)	43, 941, 1206
BstV1I	GCAGC	7 cut(s)	78, 183, 549, 621, 898, 1198, 1220
BstV2I	GAAGAC	3 cut(s)	495, 628, 1274
Bsu36I	CCTNAGG	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	495, 996
BtgI	CCRYGG	1 cut(s)	1266
BtsCI	GGATG	1 cut(s)	1076
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	1205
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	716, 994
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	5 cut(s)	214, 902, 1046, 1066, 1267
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	9 cut(s)	177, 218, 305, 497, 513, 551, 567, 933, 1198
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	1172, 1266
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	798
EcoT14I	CCWWGG	2 cut(s)	1172, 1266
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	2 cut(s)	1172, 1266
Esp3I	CGTCTC	1 cut(s)	1238
FaeI	CATG	5 cut(s)	217, 905, 1049, 1069, 1270
FaqI	GGGAC	2 cut(s)	394, 702
FatI	CATG	5 cut(s)	213, 901, 1045, 1065, 1266
Fnu4HI	GCNGC	8 cut(s)	67, 155, 172, 563, 610, 887, 1209, 1212
FokI	GGATG	1 cut(s)	1083
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	8 cut(s)	67, 155, 172, 563, 610, 887, 1209, 1212
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	8 cut(s)	67, 155, 172, 563, 610, 887, 1209, 1212
GsaI	CCCAGC	1 cut(s)	723
HaeIII	GGCC	2 cut(s)	495, 996
HapII	CCGG	2 cut(s)	14, 743
Hin1II	CATG	5 cut(s)	217, 905, 1049, 1069, 1270
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	4 cut(s)	163, 582, 754, 1202
HpaII	CCGG	2 cut(s)	14, 743
HphI	GGTGA	4 cut(s)	110, 591, 1069, 1141
Hpy166II	GTNNAC	2 cut(s)	297, 650
Hpy188I	TCNGA	6 cut(s)	168, 180, 429, 480, 753, 1201
Hpy188III	TCNNGA	2 cut(s)	80, 859
Hpy8I	GTNNAC	2 cut(s)	297, 650
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	33, 80
HpyCH4III	ACNGT	4 cut(s)	63, 346, 461, 959
HpyCH4IV	ACGT	3 cut(s)	339, 542, 976
HpyCH4V	TGCA	7 cut(s)	66, 332, 437, 465, 641, 674, 1208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1217
HpyF3I	CTNAG	9 cut(s)	177, 218, 305, 497, 513, 551, 567, 933, 1198
HpySE526I	ACGT	3 cut(s)	339, 542, 976
Hsp92II	CATG	5 cut(s)	217, 905, 1049, 1069, 1270
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	3 cut(s)	92, 525, 1096
Lsp1109I	GCAGC	7 cut(s)	78, 183, 549, 621, 898, 1198, 1220
LweI	GCATC	4 cut(s)	101, 628, 1061, 1078
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	3 cut(s)	339, 542, 976
MaeIII	GTNAC	2 cut(s)	340, 959
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	8 cut(s)	192, 669, 689, 780, 850, 971, 1051, 1166
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	8 cut(s)	314, 591, 630, 747, 1164, 1187, 1277, 1297
MslI	CAYNNNNRTG	3 cut(s)	306, 906, 1271
MspA1I	CMGCKG	2 cut(s)	932, 1211
MspI	CCGG	2 cut(s)	14, 743
MwoI	GCNNNNNNNGC	1 cut(s)	1217
NcoI	CCATGG	1 cut(s)	1266
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	217, 905, 1049, 1069, 1270
NlaIV	GGNNCC	2 cut(s)	393, 718
NsiI	ATGCAT	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	163, 582, 754, 1202
PkrI	GCNGC	8 cut(s)	68, 156, 173, 564, 611, 888, 1210, 1213
Ppu21I	YACGTR	2 cut(s)	543, 977
PpuMI	RGGWCCY	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	1013
Psp5II	RGGWCCY	1 cut(s)	716
PspFI	CCCAGC	1 cut(s)	719
PspN4I	GGNNCC	2 cut(s)	393, 718
PspPI	GGNCC	2 cut(s)	716, 994
PspPPI	RGGWCCY	1 cut(s)	716
PstI	CTGCAG	1 cut(s)	1210
PstNI	CAGNNNCTG	1 cut(s)	1205
PvuII	CAGCTG	2 cut(s)	932, 1211
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	3 cut(s)	306, 906, 1271
SaqAI	TTAA	8 cut(s)	314, 591, 630, 747, 1164, 1187, 1277, 1297
SatI	GCNGC	8 cut(s)	67, 155, 172, 563, 610, 887, 1209, 1212
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	2 cut(s)	716, 994
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	4 cut(s)	101, 628, 1061, 1078
SfcI	CTRYAG	3 cut(s)	43, 941, 1206
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	3 cut(s)	306, 906, 1271
Sse9I	AATT	8 cut(s)	192, 669, 689, 780, 850, 971, 1051, 1166
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	495
StyI	CCWWGG	2 cut(s)	1172, 1266
TaaI	ACNGT	4 cut(s)	63, 346, 461, 959
TaiI	ACGT	3 cut(s)	342, 545, 979
TaqI	TCGA	1 cut(s)	1134
TasI	AATT	8 cut(s)	192, 669, 689, 780, 850, 971, 1051, 1166
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	4 cut(s)	163, 582, 754, 1202
Tru1I	TTAA	8 cut(s)	314, 591, 630, 747, 1164, 1187, 1277, 1297
Tru9I	TTAA	8 cut(s)	314, 591, 630, 747, 1164, 1187, 1277, 1297
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	7 cut(s)	66, 171, 562, 609, 886, 1208, 1211
TspDTI	ATGAA	5 cut(s)	1054, 1055, 1062, 1122, 1217
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	2 cut(s)	689, 1051
XspI	CTAG	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.