Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

49831374 .. 49831703

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGCCTGTTTCGGAGTTAAGGAAGAAAACAAAGAACAAGTCAGAGCAATCGCAGAACTTGCAAAGCAATGCCTCAAGTTGAGTAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCCGAGAGTTAAAGAGGCTCTCGAATTCTTTATCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

51

Amino Acids

5.75

Weight (kDa)

6.27

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	2 cut(s)	3, 114
ApoI	RAATTY	1 cut(s)	139
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AspS9I	GGNCC	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	5, 116
BsiHKCI	CYCGRG	1 cut(s)	117
BsnI	GGCC	2 cut(s)	5, 116
BsoBI	CYCGRG	1 cut(s)	117
BspANI	GGCC	2 cut(s)	5, 116
BspCNI	CTCAG	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	5, 116
Cfr13I	GGNCC	1 cut(s)	115
CviJI	RGCY	3 cut(s)	5, 116, 133
CviKI_1	RGCY	3 cut(s)	5, 116, 133
DdeI	CTNAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	139
FspEI	CC	9 cut(s)	5, 19, 86, 89, 98, 111, 115, 130, 131
HaeIII	GGCC	2 cut(s)	5, 116
Hpy188I	TCNGA	3 cut(s)	14, 44, 151
Hpy188III	TCNNGA	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	62, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	150
LpnPI	CCDG	1 cut(s)	19
MboII	GAAGA	2 cut(s)	35, 119
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	2 cut(s)	83, 123
MseI	TTAA	2 cut(s)	18, 125
MwoI	GCNNNNNNNGC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	18, 125
Sau96I	GGNCC	1 cut(s)	115
SgeI	CNNG	7 cut(s)	18, 50, 71, 88, 129, 131, 148
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	18, 125
Tru9I	TTAA	2 cut(s)	18, 125
XapI	RAATTY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.