Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

28471178 .. 28471657

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCACATTGCTTCTAAGGACACTAGGTTATATGGACCCAGGGTATCTTTGCACAGGCCAACTGACAGATAAGAGTGATGTTTATAGCTTCGGAGTCGTTTTGGTAGAGATCTTAACCCGGGAAAAGCCTATTTCATTTGACAGACCAGAAAGTCAAATAATCATTGCCTCTCATTTTGTTTCACCCATTGAATTAAAAGATGGTTTCTTTCATGTTGTTGATCCAGTAGTTTTAAACGTGGGAAATCGAGAACAAGTAAGAGCAGTTGCAGAGCTTGCAAAGAGATGCCTCCATATGAACAGTGCGGAAAGGCCCTCAATGAAAGAAGTCGCCGGAGAGTTGCAGAGGCTGTCTGGCATGTGTCCTACAGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

126

Amino Acids

13.98

Weight (kDa)

5.88

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 111	1.9e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 114	6e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	153
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	90, 277
AluI	AGCT	2 cut(s)	90, 277
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	58, 314
AspS9I	GGNCC	2 cut(s)	37, 315
AsuC2I	CCSGG	2 cut(s)	121, 122
AsuHPI	GGTGA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	8
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	121, 122
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	111
Bme1390I	CCNGG	3 cut(s)	42, 121, 122
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	37, 315
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	42, 121, 122
BmsI	GCATC	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	121, 122
BsaJI	CCNNGG	3 cut(s)	40, 41, 120
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	8, 165
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	40, 41, 120
BseMI	GCAATG	2 cut(s)	8, 165
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	60, 316
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	121, 336
BsnI	GGCC	2 cut(s)	60, 316
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	111, 223
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	2 cut(s)	60, 316
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	8, 165
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	40, 41, 120
BssMI	GATC	2 cut(s)	111, 223
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	305, 373
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	114, 226
BstMBI	GATC	2 cut(s)	111, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	40, 119, 120
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	60, 316
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	37, 315
Cfr9I	CCCGGG	1 cut(s)	120
CviAII	CATG	2 cut(s)	215, 361
CviJI	RGCY	6 cut(s)	60, 90, 130, 277, 316, 352
CviKI_1	RGCY	6 cut(s)	60, 90, 130, 277, 316, 352
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	113, 225
DpnII	GATC	2 cut(s)	111, 223
DraI	TTTAAA	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	153
DseDI	GACNNNNNNGTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	218, 364
FaiI	YATR	7 cut(s)	33, 35, 87, 216, 297, 299, 362
FatI	CATG	2 cut(s)	214, 360
FauNDI	CATATG	1 cut(s)	297
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	60, 316
HapII	CCGG	2 cut(s)	121, 336
Hin1II	CATG	2 cut(s)	218, 364
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	121, 336
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	95, 380
Hpy188III	TCNNGA	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	305, 373
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	54, 272, 281, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	218, 364
Kzo9I	GATC	2 cut(s)	111, 223
LpnPI	CCDG	8 cut(s)	27, 42, 54, 134, 162, 240, 342, 349
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	240
MalI	GATC	2 cut(s)	113, 225
MboI	GATC	2 cut(s)	111, 223
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	4 cut(s)	181, 302, 328, 342
MseI	TTAA	3 cut(s)	116, 197, 236
MspI	CCGG	2 cut(s)	121, 336
MspR9I	CCNGG	3 cut(s)	42, 121, 122
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	121, 122
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	2 cut(s)	111, 223
NlaIII	CATG	2 cut(s)	218, 364
NlaIV	GGNNCC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	364
PasI	CCCWGGG	1 cut(s)	41
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 315
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	116, 197, 236
Sau3AI	GATC	2 cut(s)	111, 223
Sau96I	GGNCC	2 cut(s)	37, 315
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	3 cut(s)	42, 121, 122
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	31, 92, 243, 279
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	37
SmaI	CCCGGG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	40, 119, 120
TaaI	ACNGT	2 cut(s)	305, 373
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	116, 197, 236
Tru9I	TTAA	3 cut(s)	116, 197, 236
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	126, 203, 314, 338
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	364
XmaI	CCCGGG	1 cut(s)	120
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.