Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

386474 .. 387578

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAACAAAATTGTCTATCTCTGATTCTTGCGCCACAATCAGTTGTAAATGAAGGAAACAGAGAACAAGTCAGAGCAGTTGCAGAGCTTGCAAAGAGATGCCTCAAGTTGAGTGGTGCAGAAAGGCCTGCAATGGAAGAAGTGGCCAAGGAGTTAAAATTACTATATGAAGAGTCTACCTGTAATTGCATTAGAAGCCACGTACATAAACCAAAGAGAATCTGGAAATCTCAAGCTCACAGTTCCCCCTACCCTTTTGAATTAGGTGGTGCACCATCCAAGTCCAGCCTCGTCGTTTCTAAGTCCATATATGGTAAGAAACAGCAGCAGTGTGACACCAGTATCAGCTCGACTTACTACATCCATGGTGATGATATGGCCAACCTTGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.64

Weight (kDa)

8.27

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	176
AcoI	YGGCCR	2 cut(s)	144, 378
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	260, 389
AjuI	GAANNNNNNNTTGG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	88, 236, 348
AluI	AGCT	3 cut(s)	88, 236, 348
Alw21I	GWGCWC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	270
AoxI	GGCC	3 cut(s)	125, 144, 378
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	325, 358
BalI	TGGCCA	2 cut(s)	146, 380
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	394
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	89, 216
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	147, 364
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	147, 364
BseGI	GGATG	2 cut(s)	275, 360
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	127, 146, 380
BsiHKAI	GWGCWC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	127, 146, 380
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	364
BspANI	GGCC	3 cut(s)	127, 146, 380
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	147, 364
BssT1I	CCWWGG	2 cut(s)	147, 364
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	90, 129
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	275, 360
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 195
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	127, 146, 380
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	275, 360
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	90, 129
CfoI	GCGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	8 cut(s)	88, 127, 146, 198, 236, 288, 348, 380
CviKI_1	RGCY	8 cut(s)	88, 127, 146, 198, 236, 288, 348, 380
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	300
EaeI	YGGCCR	2 cut(s)	144, 378
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	147, 364
Eco147I	AGGCCT	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	147, 364
ErhI	CCWWGG	2 cut(s)	147, 364
FaeI	CATG	1 cut(s)	368
FaiI	YATR	8 cut(s)	166, 168, 207, 308, 310, 312, 366, 377
FatI	CATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	2 cut(s)	262, 347
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	394
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	127, 146, 380
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	25, 173, 219
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	177, 272
Hpy188I	TCNGA	2 cut(s)	24, 74
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	177, 272
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	6 cut(s)	83, 92, 119, 131, 189, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 195
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	32
LpnPI	CCDG	5 cut(s)	141, 193, 208, 298, 352
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	332
MboII	GAAGA	2 cut(s)	149, 182
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	2 cut(s)	146, 380
MluCI	AATT	5 cut(s)	10, 158, 184, 260, 389
MluNI	TGGCCA	2 cut(s)	146, 380
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	113, 299
Mox20I	TGGCCA	2 cut(s)	146, 380
MscI	TGGCCA	2 cut(s)	146, 380
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	2 cut(s)	146, 380
MwoI	GCNNNNNNNGC	2 cut(s)	89, 195
NcoI	CCATGG	1 cut(s)	364
NlaIII	CATG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	25, 219
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	202
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	7 cut(s)	90, 182, 204, 238, 268, 350, 387
SfaNI	GCATC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	104, 231
SmoI	CTYRAG	2 cut(s)	104, 231
Sse9I	AATT	5 cut(s)	10, 158, 184, 260, 389
SseBI	AGGCCT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	394
StuI	AGGCCT	1 cut(s)	127
StyI	CCWWGG	2 cut(s)	147, 364
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	350
TasI	AATT	5 cut(s)	10, 158, 184, 260, 389
TfiI	GAWTC	2 cut(s)	25, 219
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	66, 183
TspRI	CASTG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.