FvH4_5g14180

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001114
Physical Location & Seq
Reverse (-)
8007942 .. 8009197
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14180.t1

Sequence Viewer

Length: 549 bp
ATGGGTGTCGAGAATTATCATGTAATTGAGCTTGTCGGTGAAGGTTCCTTCGGGAAGGTATACACGGGAAGACGCAAGTTCACAGGCCAGATTCTAAGGAAGCTGAAGCATGAAAATATCATTGAAATGCTTGATTCCTTTGAAAGCCCACAAGAGTTCTGTGTTGTCACAGAGTTTGCACAAGGTGAACTATTTGAGATTCTTGAGGATGATAAGCACCTTCCGTTCAAGCAATTGCTAAGCAATTGGTACTTTCTTGTCACCATGCCAGTTTATATCCCATCTCTAATTGTCATACCTTTCCGATCTAGACAAGAAAATCAAAGAATCATAGTCTGTCATTTCCTTTTGTCCATGGAGAAACAAGATGGCCTGTATCAGATTCTTGCGCCGCAAGTTAAGGAAGAAAACAAAGAACAAGTGAGAGCCGTCGCAGAACTTGCAAAGCAATGCCTCAAGTTGAGCAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCAGGGAGTTAAAGAGGCTGTCGGACACTTATCTTACAGTTCATGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007163 GO:0007165 GO:0007166 GO:0007224 GO:0007227 GO:0007228 GO:0007275 GO:0007276 GO:0007349 GO:0007584 GO:0008064 GO:0008092 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008589 GO:0009524 GO:0009553 GO:0009558 GO:0009561 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010639 GO:0010646 GO:0010647 GO:0014070 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0019894 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0030010 GO:0030030 GO:0030031 GO:0030554 GO:0030832 GO:0030833 GO:0030837 GO:0031156 GO:0031272 GO:0031323 GO:0031326 GO:0031333 GO:0031344 GO:0031667 GO:0032101 GO:0032104 GO:0032107 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032956 GO:0032970 GO:0033043 GO:0033206 GO:0033273 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043326 GO:0043327 GO:0043412 GO:0043900 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0045880 GO:0048229 GO:0048232 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051301 GO:0051321 GO:0051493 GO:0051494 GO:0051593 GO:0051704 GO:0051716 GO:0060176 GO:0060255 GO:0060271 GO:0060491 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090066 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140013 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902410 GO:1902903 GO:1902904 GO:1903046 GO:1903047 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04341 map04341
Pfam Domains
Protein Families
Arm HEAT HEAT_2 Pkinase

Protein Analysis

183

Amino Acids

21.21

Weight (kDa)

5.79

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 30 - 78 5.8e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AciI CCGC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 3 cut(s) 125, 143, 229
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 2 cut(s) 31, 103
AluI AGCT 2 cut(s) 31, 103
AoxI GGCC 3 cut(s) 85, 370, 495
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 3 cut(s) 50, 197, 253
BalI TGGCCA 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 2 cut(s) 289, 362
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 499
BfaI CTAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 392
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 224, 440
BsaJI CCNNGG 2 cut(s) 354, 498
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 354, 498
BseGI GGATG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 3 cut(s) 87, 372, 497
BsnI GGCC 3 cut(s) 87, 372, 497
Bsp143I GATC 1 cut(s) 305
Bsp1720I GCTNAGC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 392
BspANI GGCC 3 cut(s) 87, 372, 497
BspLI GGNNCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 354, 498
BssMI GATC 1 cut(s) 305
BssNAI GTATAC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 440
BstDEI CTNAG 2 cut(s) 95, 239
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 1 cut(s) 308
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 497
BstV2I GAAGAC 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 61
BsuRI GGCC 3 cut(s) 87, 372, 497
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 391
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 250
CviAII CATG 5 cut(s) 20, 110, 265, 355, 539
CviJI RGCY 8 cut(s) 31, 87, 103, 147, 372, 428, 497, 514
CviKI_1 RGCY 8 cut(s) 31, 87, 103, 147, 372, 428, 497, 514
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 95, 239
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 5 cut(s) 23, 113, 268, 358, 542
FaiI YATR 9 cut(s) 21, 61, 111, 266, 276, 296, 332, 356, 540
FatI CATG 5 cut(s) 19, 109, 264, 354, 538
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 392
HaeIII GGCC 3 cut(s) 87, 372, 497
HgaI GACGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 391
Hin1II CATG 5 cut(s) 23, 113, 268, 358, 542
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 5 cut(s) 91, 134, 199, 327, 382
HphI GGTGA 3 cut(s) 50, 197, 253
Hpy166II GTNNAC 3 cut(s) 61, 81, 188
Hpy188I TCNGA 3 cut(s) 305, 381, 520
Hpy188III TCNNGA 4 cut(s) 10, 52, 203, 309
Hpy8I GTNNAC 3 cut(s) 61, 81, 188
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 4 cut(s) 35, 49, 58, 230
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 3 cut(s) 179, 443, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 95, 239
Hsp92II CATG 5 cut(s) 23, 113, 268, 358, 542
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 1 cut(s) 305
LpnPI CCDG 6 cut(s) 69, 101, 282, 386, 484, 511
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 166, 259
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 3 cut(s) 81, 416, 500
MfeI CAATTG 2 cut(s) 233, 244
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 6 cut(s) 13, 24, 233, 244, 288, 544
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 3 cut(s) 199, 464, 504
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 4 cut(s) 399, 506, 543, 547
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 499
MunI CAATTG 2 cut(s) 233, 244
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 1 cut(s) 440
NcoI CCATGG 1 cut(s) 354
NdeII GATC 1 cut(s) 305
NlaIII CATG 5 cut(s) 23, 113, 268, 358, 542
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 166, 259
PacI TTAATTAA 1 cut(s) 547
PfeI GAWTC 5 cut(s) 91, 134, 199, 327, 382
PkrI GCNGC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 4 cut(s) 399, 506, 543, 547
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 499
SetI ASST 7 cut(s) 33, 46, 60, 105, 187, 222, 301
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 203, 455
SmoI CTYRAG 2 cut(s) 203, 455
Sse9I AATT 6 cut(s) 13, 24, 233, 244, 288, 544
SsiI CCGC 1 cut(s) 392
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 9
TasI AATT 6 cut(s) 13, 24, 233, 244, 288, 544
TauI GCSGC 1 cut(s) 394
TfiI GAWTC 5 cut(s) 91, 134, 199, 327, 382
Tru1I TTAA 4 cut(s) 399, 506, 543, 547
Tru9I TTAA 4 cut(s) 399, 506, 543, 547
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 2 cut(s) 166, 259
Tsp45I GTSAC 2 cut(s) 166, 259
TspDTI ATGAA 2 cut(s) 126, 527
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 472
XbaI TCTAGA 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.