Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

68271246 .. 68271814

Gene Structure 569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG469600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATAAAAAATGCACTAGAAGCTAACTCGGAGTTCACAGACGTCACAGTTCCTTGCAGCTCTGTTGGCATAGTTGGAAAAAGATGTTGTGTACTTACATGTATAGATGTAACTTACTCACAGGGATATACAAATAACAGCTTAGATCAAATTGCATTAGCTGACTTGGTTGACATGCGTTGTCGAACTTCCGATACTACTGGGTTTTGTTACAAACAATCCAGTGGTAATAGAAGTGCTCATCTTTACACTGGCATTGGCAGTACCCATTATTATCTTGATTCTTTTCCTCCTGGACACCAAGGTAGTGACAGTATCCGTTCAGCTCATACAACGGTACATTATTACAGTCCTTGTCCAGTTGGGACTTCTCGTGATGGTGATATTCCGGAAGGAGTTGTTAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.73

Weight (kDa)

5.87

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	93, 265, 339
AflIII	ACRYGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	23, 60, 141, 161, 326
AluI	AGCT	5 cut(s)	23, 60, 141, 161, 326
Alw21I	GWGCWC	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	392
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	388
Bse1I	ACTGG	4 cut(s)	205, 222, 256, 359
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	301
BseNI	ACTGG	4 cut(s)	205, 222, 256, 359
BseXI	GCAGC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	205, 222, 256, 359
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	49, 314, 337, 350
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 66
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	102, 178
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	229, 249
Csp6I	GTAC	3 cut(s)	92, 264, 338
CviAII	CATG	2 cut(s)	99, 175
CviJI	RGCY	5 cut(s)	23, 60, 141, 161, 326
CviKI_1	RGCY	5 cut(s)	23, 60, 141, 161, 326
CviQI	GTAC	3 cut(s)	92, 264, 338
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	102, 178
FaiI	YATR	6 cut(s)	71, 100, 104, 129, 176, 330
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	98, 174
Fnu4HI	GCNGC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	58
HapII	CCGG	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	102, 178
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	36, 92, 172
Hpy188I	TCNGA	2 cut(s)	31, 193
Hpy188III	TCNNGA	3 cut(s)	278, 374, 389
Hpy8I	GTNNAC	3 cut(s)	36, 92, 172
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	4 cut(s)	49, 314, 337, 350
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	14, 57, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 66
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	102, 178
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	107, 186, 235, 237, 279, 306, 372, 402
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	43, 109, 209, 308
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	1 cut(s)	402
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	20, 66
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	102, 178
NmuCI	GTSAC	2 cut(s)	43, 308
NspI	RCATGY	2 cut(s)	102, 178
PciI	ACATGT	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	59
PscI	ACATGT	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	178, 210
RsaI	GTAC	3 cut(s)	93, 265, 339
RsaNI	GTAC	3 cut(s)	92, 264, 338
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	25, 45, 62, 143, 163, 307, 328
Sse9I	AATT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	4 cut(s)	49, 314, 337, 350
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	229, 256
TseFI	GTSAC	2 cut(s)	43, 308
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	2 cut(s)	43, 308
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	229, 256
XceI	RCATGY	2 cut(s)	102, 178
XspI	CTAG	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.