Rmu_sc0006388.1_g000032

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006388.1
OG0001114
Physical Location & Seq
Reverse (-)
165353 .. 166117
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006388.1_g000032.1.cds

Sequence Viewer

Length: 765 bp
atgaccatcaactgtcataagaagagtcacatatttggtccaggagataatggagtcgagcatttcataaatgagattatcactcttaccaaaatcaaccatcaaaatgtggttaagttattgggctgctgtctggtgactgaagcttctatactggtctatgaacaggcctctaatgggaccctttttgactacatttatcataccaatgggaagagttcattgccttgggatacccttctaaagatagcctcagaatcagcagctgcccttgcttatctgcattctgcatcaatcatcaatggaactgtcaagtcttccaacatattgttaacttattattttgtggccaaagtcatcggttttggaccttcgaggttagtgcctagtaatgaatcacagataagcacattggttcggaggacactaggctatctagacccggagtattttcataaaggccaattgacaggtaagagcgatgtttacagctttggaatggttttgttagagattgtaacaggagagaagccaatatcatttggtagaccagaaagtcaaagaatcatgtcttcccattttgtatcgtccatggagttacaaagtggtctgtttgatcagattgttgggtcacaagtcataaaacagggacacagagaacaagtcagagcagtagctgagcttgcaaagagatgcctcagtttgagtagtgcagaaagacctgctatggaagaagtggccaggaagttgaaaatgttgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

254

Amino Acids

28.04

Weight (kDa)

8.6

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 547
AcoI YGGCCR 2 cut(s) 348, 738
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 751
AjnI CCWGG 2 cut(s) 40, 740
AluBI AGCT 5 cut(s) 146, 266, 492, 677, 682
AluI AGCT 5 cut(s) 146, 266, 492, 677, 682
AlwNI CAGNNNCTG 2 cut(s) 266, 677
AoxI GGCC 4 cut(s) 168, 348, 460, 738
ApeKI GCWGC 3 cut(s) 126, 263, 266
AspS9I GGNCC 3 cut(s) 38, 180, 368
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 3 cut(s) 38, 180, 368
BalI TGGCCA 2 cut(s) 350, 740
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbsI GAAGAC 2 cut(s) 309, 564
BbvI GCAGC 3 cut(s) 113, 253, 275
BccI CCATC 2 cut(s) 14, 108
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 2 cut(s) 42, 742
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 3 cut(s) 387, 428, 437
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 3 cut(s) 127, 264, 267
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 3 cut(s) 128, 265, 268
Bme1390I CCNGG 3 cut(s) 42, 443, 742
Bme18I GGWCC 3 cut(s) 38, 180, 368
BmgT120I GGNCC 3 cut(s) 38, 180, 368
BmiI GGNNCC 2 cut(s) 181, 182
BmrFI CCNGG 3 cut(s) 42, 443, 742
BmsI GCATC 2 cut(s) 299, 683
BpiI GAAGAC 2 cut(s) 309, 564
Bpu1102I GCTNAGC 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 227, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 42, 742
BseDI CCNNGG 2 cut(s) 227, 591
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 267, 669, 712
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 113, 253, 275
BsgI GTGCAG 1 cut(s) 732
BshFI GGCC 4 cut(s) 170, 350, 462, 740
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 2 cut(s) 193, 663
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 193, 663
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 4 cut(s) 170, 350, 462, 740
Bsp143I GATC 1 cut(s) 616
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 591
BspANI GGCC 4 cut(s) 170, 350, 462, 740
BspCNI CTCAG 3 cut(s) 266, 670, 711
BspLI GGNNCC 2 cut(s) 181, 182
BspMI ACCTGC 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 227, 591
BssMI GATC 1 cut(s) 616
BssT1I CCWWGG 2 cut(s) 227, 591
Bst2UI CCWGG 2 cut(s) 42, 742
Bst4CI ACNGT 2 cut(s) 14, 310
Bst6I CTCTTC 2 cut(s) 17, 209
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 3 cut(s) 253, 678, 698
BstDSI CCRYGG 1 cut(s) 591
BstKTI GATC 1 cut(s) 619
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 272, 683
BstNI CCWGG 2 cut(s) 42, 742
BstSCI CCNGG 3 cut(s) 40, 441, 740
BstV1I GCAGC 3 cut(s) 113, 253, 275
BstV2I GAAGAC 2 cut(s) 309, 564
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 4 cut(s) 170, 350, 462, 740
BtgI CCRYGG 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 495
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 1 cut(s) 684
CaiI CAGNNNCTG 2 cut(s) 266, 677
Cfr13I GGNCC 3 cut(s) 38, 180, 368
CviAII CATG 2 cut(s) 568, 592
DdeI CTNAG 3 cut(s) 253, 678, 698
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 555
DseDI GACNNNNNNGTC 1 cut(s) 555
EaeI YGGCCR 2 cut(s) 348, 738
Eam1104I CTCTTC 2 cut(s) 17, 209
EarI CTCTTC 2 cut(s) 17, 209
Eco130I CCWWGG 2 cut(s) 227, 591
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 3 cut(s) 38, 180, 368
Eco57I CTGAAG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 40, 740
EcoT14I CCWWGG 2 cut(s) 227, 591
ErhI CCWWGG 2 cut(s) 227, 591
FaeI CATG 2 cut(s) 571, 595
FaqI GGGAC 2 cut(s) 193, 663
FatI CATG 2 cut(s) 567, 591
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 127, 264, 267
Fsp4HI GCNGC 3 cut(s) 127, 264, 267
FspBI CTAG 3 cut(s) 387, 428, 437
GluI GCNGC 3 cut(s) 127, 264, 267
HaeIII GGCC 4 cut(s) 170, 350, 462, 740
HapII CCGG 1 cut(s) 443
Hin1II CATG 2 cut(s) 571, 595
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 5 cut(s) 25, 54, 257, 395, 564
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 333, 487, 548
Hpy188I TCNGA 4 cut(s) 256, 420, 621, 668
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 3 cut(s) 333, 487, 548
HpyAV CCTTC 2 cut(s) 248, 381
HpyCH4III ACNGT 2 cut(s) 14, 310
HpyCH4V TGCA 4 cut(s) 283, 290, 686, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 683
HpyF3I CTNAG 3 cut(s) 253, 678, 698
Hsp92II CATG 2 cut(s) 571, 595
KflI GGGWCCC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 616
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 113, 253, 275
LweI GCATC 2 cut(s) 299, 683
MaeI CTAG 3 cut(s) 387, 428, 437
MaeIII GTNAC 5 cut(s) 26, 136, 517, 597, 630
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 5 cut(s) 34, 226, 309, 564, 743
MfeI CAATTG 1 cut(s) 464
MlsI TGGCCA 2 cut(s) 350, 740
MluCI AATT 1 cut(s) 464
MluNI TGGCCA 2 cut(s) 350, 740
MlyI GAGTC 2 cut(s) 34, 63
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 5 cut(s) 181, 262, 369, 414, 707
Mox20I TGGCCA 2 cut(s) 350, 740
MscI TGGCCA 2 cut(s) 350, 740
MseI TTAA 2 cut(s) 114, 332
MslI CAYNNNNRTG 2 cut(s) 105, 207
Msp20I TGGCCA 2 cut(s) 350, 740
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 3 cut(s) 42, 443, 742
MunI CAATTG 1 cut(s) 464
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 2 cut(s) 42, 742
MwoI GCNNNNNNNGC 2 cut(s) 272, 683
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 591
NdeII GATC 1 cut(s) 616
NlaIII CATG 2 cut(s) 571, 595
NlaIV GGNNCC 2 cut(s) 181, 182
NmuCI GTSAC 3 cut(s) 26, 136, 630
PceI AGGCCT 1 cut(s) 170
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 257, 395, 564
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 3 cut(s) 128, 265, 268
PleI GAGTC 2 cut(s) 33, 62
PpsI GAGTC 2 cut(s) 33, 62
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 40, 740
PspGI CCWGG 2 cut(s) 40, 740
PspN4I GGNNCC 2 cut(s) 181, 182
PspPI GGNCC 3 cut(s) 38, 180, 368
PspPPI RGGWCCY 1 cut(s) 180
PstNI CAGNNNCTG 2 cut(s) 266, 677
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 105, 207
SaqAI TTAA 2 cut(s) 114, 332
SatI GCNGC 3 cut(s) 127, 264, 267
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 3 cut(s) 38, 180, 368
SchI GAGTC 2 cut(s) 34, 63
ScrFI CCNGG 3 cut(s) 42, 443, 742
SetI ASST 9 cut(s) 148, 268, 373, 380, 475, 494, 679, 684, 724
SfaNI GCATC 2 cut(s) 299, 683
SinI GGWCC 3 cut(s) 38, 180, 368
SmiMI CAYNNNNRTG 2 cut(s) 105, 207
Sse9I AATT 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 3 cut(s) 387, 428, 437
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 40, 441, 740
StyI CCWWGG 2 cut(s) 227, 591
TaaI ACNGT 2 cut(s) 14, 310
TaqI TCGA 2 cut(s) 57, 374
TasI AATT 1 cut(s) 464
TfiI GAWTC 3 cut(s) 257, 395, 564
Tru1I TTAA 2 cut(s) 114, 332
Tru9I TTAA 2 cut(s) 114, 332
TseFI GTSAC 3 cut(s) 26, 136, 630
TseI GCWGC 3 cut(s) 126, 263, 266
Tsp45I GTSAC 3 cut(s) 26, 136, 630
TspDTI ATGAA 5 cut(s) 55, 177, 210, 408, 443
VpaK11BI GGWCC 3 cut(s) 38, 180, 368
XbaI TCTAGA 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 3 cut(s) 387, 428, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.