Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

27455031 .. 27455696

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTTCTGTTGACAGGAATTGCTCCGGAAGCCAACACCATGCTGAGCTACCAAGAAGATTGTGGAGATCTCAATATCACACTTCCATACCAAAATGATTTTGAGGTAGCAAAACTTTCTTCCACCCATCTAAGTGATTTAACAATCTTGGACTCTCCAAACAAGGTTACGGTCATAGGTTGTGAATACTCCTTTGATTTTGTGAGAGGGACAAACAAGGCACCACCCAACAACGACACCAACAATAGTCTGACTCATGCATCTTGTTCTAGTAGTATTGGCTGTTGCAGTTCTTCCATTCAGACCATTCCCAGAGGATTCAGGTCTTTCTTCACTGTGGAAGAAATGAGCATTACAGGAAACACCAAACCATTTAGCAGCGAAGCAGAAAACCTTCTTAAACTTGGTACATTGAGAAAACCGGAAGCTTATGATGGAATTTCAAAGACAAGACGGGAATTGTACCACATTAAAAATGGTAAAGGTTCCAGTCCATACATCTCAGTCTTTTTGGTAAATCTGATTCTTGGGAAGTCATACGGTGCCCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

185

Amino Acids

20.14

Weight (kDa)

5.91

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	220, 542
AccIII	TCCGGA	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	2 cut(s)	409, 464
AgsI	TTSAA	1 cut(s)	444
AluBI	AGCT	2 cut(s)	48, 428
AluI	AGCT	2 cut(s)	48, 428
Aor13HI	TCCGGA	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	2 cut(s)	220, 542
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	135, 428
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	548
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	380
BmiI	GGNNCC	3 cut(s)	222, 487, 544
BmsI	GCATC	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	25, 421
Bse1I	ACTGG	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	35, 516
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	390
BshNI	GGYRCC	2 cut(s)	220, 542
BsiSI	CCGG	2 cut(s)	26, 422
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	36, 515
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	222, 487, 544
BspMAI	CTGCAG	1 cut(s)	552
BspT107I	GGYRCC	2 cut(s)	220, 542
BsrI	ACTGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	172, 337, 542
BstDEI	CTNAG	3 cut(s)	44, 131, 502
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	548
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	408, 463
CviAII	CATG	2 cut(s)	40, 257
CviJI	RGCY	4 cut(s)	32, 48, 282, 428
CviKI_1	RGCY	4 cut(s)	32, 48, 282, 428
CviQI	GTAC	2 cut(s)	408, 463
DdeI	CTNAG	3 cut(s)	44, 131, 502
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	43, 260
FaiI	YATR	7 cut(s)	41, 88, 176, 258, 432, 496, 538
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	39, 256
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	379
HapII	CCGG	2 cut(s)	26, 422
Hin1II	CATG	2 cut(s)	43, 260
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	4 cut(s)	152, 253, 318, 523
HpaII	CCGG	2 cut(s)	26, 422
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	252, 303, 522
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	3 cut(s)	172, 337, 542
HpyCH4V	TGCA	3 cut(s)	260, 288, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	44, 131, 502
Hsp92II	CATG	2 cut(s)	43, 260
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	39, 307, 325, 342, 435, 502
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	5 cut(s)	68, 111, 285, 322, 353
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	3 cut(s)	18, 438, 458
MlyI	GAGTC	2 cut(s)	146, 247
MnlI	CCTC	3 cut(s)	97, 200, 308
Mph1103I	ATGCAT	1 cut(s)	262
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	3 cut(s)	140, 399, 471
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	2 cut(s)	26, 422
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	43, 260
NlaIV	GGNNCC	3 cut(s)	222, 487, 544
NsiI	ATGCAT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	318, 523
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	2 cut(s)	146, 247
PpsI	GAGTC	2 cut(s)	146, 247
PspN4I	GGNNCC	3 cut(s)	222, 487, 544
PstI	CTGCAG	1 cut(s)	552
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	409, 464
RsaNI	GTAC	2 cut(s)	408, 463
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	140, 399, 471
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	146, 247
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	8 cut(s)	50, 108, 168, 181, 326, 396, 430, 487
SfaNI	GCATC	1 cut(s)	269
SfcI	CTRYAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	18, 438, 458
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	172, 337, 542
TasI	AATT	3 cut(s)	18, 438, 458
TfiI	GAWTC	2 cut(s)	318, 523
Tru1I	TTAA	3 cut(s)	140, 399, 471
Tru9I	TTAA	3 cut(s)	140, 399, 471
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	378
TspRI	CASTG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	2 cut(s)	59, 473
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.