Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

39731159 .. 39735407

Gene Structure 4249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCGATCATATTTTCCACTTTTGTCATTGATTTACAATGGATTGCCAGCTGCTACTATCGAGGAACAGAGTGGAAGTAAGTACCCGAGTATCGTTACTATGGTGTTTGTCCACTTCCTTGGACCTTCGATGCTTGTTCATATCGATAGCATCGAATCTGCAGCATGTCTTGCTTATTTGCATTCTCCATCAATCATTCATGGAAATGTCAAATCTTCCAACATTTTACTAACTGCTTGCTTGGCCAAAGTTGCTGGTTTTGGACCTCCAAGTTTAGTCCCTAGCAATGAGTCCCGGATAAGTACACTGGTGCAGAGGACACTCGGTTATCGGACCCACGTATTTCATTACAGGCCAATTGACGATAAGAGTGATGTTTACAGCTTTGGAGTCTTTTTGGTAGAAATTTTAACTGGAGAGAAGCCCATATACTTTAATAGATCAGAAAATCAACGAATCATAACTTGTCATTTCCTTTTGTCCATGGATCAACAAAATGGCCTGTTTCAGATTCTTGCTCCACAAGTTAAGGAAGAAAACAAAGAACAAGTCGAGCAGTCGCAGAACTCGCAAAGCAATGCCTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

6.37

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	51 - 144	5.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	56 - 160	2e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	2 cut(s)	83, 304
AluBI	AGCT	2 cut(s)	50, 384
AluI	AGCT	2 cut(s)	50, 384
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	3 cut(s)	243, 353, 499
ApeKI	GCWGC	2 cut(s)	50, 161
ApoI	RAATTY	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspS9I	GGNCC	3 cut(s)	122, 263, 333
AsuC2I	CCSGG	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	122, 263, 333
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BalI	TGGCCA	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbvI	GCAGC	2 cut(s)	37, 173
BccI	CCATC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	51, 162
BlsI	GCNGC	2 cut(s)	52, 163
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	3 cut(s)	122, 263, 333
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	122, 263, 333
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	120, 159
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	118, 483
Bse1I	ACTGG	2 cut(s)	312, 418
Bse3DI	GCAATG	2 cut(s)	292, 583
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	118, 483
BseMI	GCAATG	2 cut(s)	292, 583
BseNI	ACTGG	2 cut(s)	312, 418
BseXI	GCAGC	2 cut(s)	37, 173
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	245, 355, 501
BshVI	ATCGAT	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	263, 277
BsmFI	GGGAC	2 cut(s)	263, 277
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	245, 355, 501
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	5, 440, 487
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	3 cut(s)	245, 355, 501
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	335
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	292, 583
BsrI	ACTGG	2 cut(s)	312, 418
BssECI	CCNNGG	2 cut(s)	118, 483
BssMI	GATC	3 cut(s)	5, 440, 487
BssT1I	CCWWGG	2 cut(s)	118, 483
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	48, 238
BstDSI	CCRYGG	1 cut(s)	483
BstKTI	GATC	3 cut(s)	8, 443, 490
BstMBI	GATC	3 cut(s)	5, 440, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 242, 251, 568
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	37, 173
BstXI	CCANNNNNNTGG	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	245, 355, 501
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	48, 238
Cfr13I	GGNCC	3 cut(s)	122, 263, 333
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	82, 303
CviAII	CATG	3 cut(s)	165, 200, 484
CviJI	RGCY	6 cut(s)	50, 245, 355, 384, 424, 501
CviKI_1	RGCY	6 cut(s)	50, 245, 355, 384, 424, 501
CviQI	GTAC	2 cut(s)	82, 303
DpnI	GATC	3 cut(s)	7, 442, 489
DpnII	GATC	3 cut(s)	5, 440, 487
EaeI	YGGCCR	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	118, 483
Eco47I	GGWCC	3 cut(s)	122, 263, 333
Eco88I	CYCGRG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	118, 483
ErhI	CCWWGG	2 cut(s)	118, 483
FaeI	CATG	3 cut(s)	168, 203, 487
FaiI	YATR	9 cut(s)	10, 101, 141, 166, 201, 428, 430, 461, 485
FaqI	GGGAC	2 cut(s)	263, 277
FatI	CATG	3 cut(s)	164, 199, 483
Fnu4HI	GCNGC	2 cut(s)	51, 162
Fsp4HI	GCNGC	2 cut(s)	51, 162
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	51, 162
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	245, 355, 501
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	3 cut(s)	168, 203, 487
HinfI	GANTC	5 cut(s)	155, 290, 390, 456, 511
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	112, 305, 379
Hpy188I	TCNGA	3 cut(s)	333, 445, 510
Hpy8I	GTNNAC	3 cut(s)	112, 305, 379
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	161, 181, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 242, 251, 568
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	168, 203, 487
Kzo9I	GATC	3 cut(s)	5, 440, 487
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	7 cut(s)	60, 240, 293, 308, 337, 399, 515
Lsp1109I	GCAGC	2 cut(s)	37, 173
LweI	GCATC	2 cut(s)	120, 159
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	7, 442, 489
MboI	GATC	3 cut(s)	5, 440, 487
MboII	GAAGA	2 cut(s)	207, 545
MfeI	CAATTG	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	2 cut(s)	357, 405
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	299, 399
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	3 cut(s)	55, 276, 309
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	410, 435, 528
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	170, 242, 251, 568
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	5, 440, 487
NlaIII	CATG	3 cut(s)	168, 203, 487
NlaIV	GGNNCC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	155, 456, 511
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	52, 163
PleI	GAGTC	2 cut(s)	298, 398
PpsI	GAGTC	2 cut(s)	298, 398
Ppu21I	YACGTR	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	3 cut(s)	122, 263, 333
PstI	CTGCAG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	83, 304
RsaNI	GTAC	2 cut(s)	82, 303
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	410, 435, 528
SatI	GCNGC	2 cut(s)	51, 162
Sau3AI	GATC	3 cut(s)	5, 440, 487
Sau96I	GGNCC	3 cut(s)	122, 263, 333
SchI	GAGTC	2 cut(s)	299, 399
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	5 cut(s)	52, 127, 268, 342, 386
SfaNI	GCATC	2 cut(s)	120, 159
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	3 cut(s)	122, 263, 333
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	2 cut(s)	357, 405
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	118, 483
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	60, 128, 144, 153, 552
TasI	AATT	2 cut(s)	357, 405
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	155, 456, 511
Tru1I	TTAA	3 cut(s)	410, 435, 528
Tru9I	TTAA	3 cut(s)	410, 435, 528
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	2 cut(s)	50, 161
TspDTI	ATGAA	3 cut(s)	128, 188, 335
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	122, 263, 333
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.