Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

22241597 .. 22243892

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGACATAGAGCTGGTGGCACAAAATTTTTTAACAGCCGAGGAGCTTGAGATGGCTACCGAGTACAATCAAGGACCAGGAGCCAGCTCAAGTACTAATGGAACAGTTTACAGTAAACTTTCACTTGCAGACAGTGTAAGGGAGATGGTTTTTGTAAAAGAAAAGGTACAAGTGGAGGAGGGCCGAATCGAGCGTTTTATAAATGAGATCATCTCTTTTGCCCAAGTGAATCATCAAAATGTGATCAAGTTGTTCGGATGCTGTTTAGAGACTGAAGCTCCCATTTTGGTTTATGAATTCGTCTCTAATGGGAGCCTTTACGATTACATTCATGACCGGAGAAATGGGGAAAATTCAGTGCCTTATTGGGATATCCTTATGGAGATAACAGCAGAATCTGCAGCAGGTCTTTCTTATCTGCATTCCTTATCAATCATCCATGGAAATGTCAAGTCTTCCAATATATTGATGACTGATTGTTTGGCCAAAGTCGCTGGTTTCGGACCTCTAAGGTTAATCCCTAGTAATGAGTCCCAGACAAGTACATTGTTTCAAAGGACACTGGGTTATCTGGACCCGGAGTATCTTATTACAGGCCAGTTGACAGAGAAGAGTGATGTCTACAGCTTTGGAGTCGTTTTAGTAGAAATATTAACTGGGGAGAAGCCAATAGACTACTATAGACCAGAAAGTCAGAGAATCATAACTTCTCATTTTCTTTTGTCCATGGAATCACAAAATGGCCTTCTTCAGATTCATGCTCCACAAGTTAAGGAGGATAACAAAGAACAAGTCACAGCAGTCGCAGAACTTGCAAAAAGATGCCTCAAGTTGAGCAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCGGAGAGTTAAAGACGATGTCGGACACGTATATTACAGTTCATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

307

Amino Acids

34.18

Weight (kDa)

4.79

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	33 - 292	9.3e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	49 - 289	4.1e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AasI	GACNNNNNNGTC	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	621
AcoI	YGGCCR	2 cut(s)	483, 867
AcsI	RAATTY	3 cut(s)	25, 296, 352
AcuI	CTGAAG	2 cut(s)	294, 734
AfaI	GTAC	4 cut(s)	65, 94, 168, 544
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	5 cut(s)	13, 46, 87, 278, 627
AluI	AGCT	5 cut(s)	13, 46, 87, 278, 627
Alw26I	GTCTC	2 cut(s)	263, 307
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	5 cut(s)	181, 483, 595, 742, 867
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	3 cut(s)	25, 296, 352
ArsI	GACNNNNNNTTYG	4 cut(s)	463, 495, 777, 809
AspS9I	GGNCC	4 cut(s)	74, 181, 503, 574
AsuC2I	CCSGG	1 cut(s)	578
AvaII	GGWCC	3 cut(s)	74, 503, 574
BalI	TGGCCA	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	46, 139
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	263, 307
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	3 cut(s)	399, 622, 679
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	2 cut(s)	78, 578
Bme18I	GGWCC	3 cut(s)	74, 503, 574
BmgT120I	GGNCC	4 cut(s)	74, 181, 503, 574
BmiI	GGNNCC	3 cut(s)	82, 314, 576
BmrFI	CCNGG	2 cut(s)	78, 578
BmrI	ACTGGG	2 cut(s)	572, 666
BmsI	GCATC	2 cut(s)	248, 812
BmuI	ACTGGG	2 cut(s)	572, 666
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuEI	CTTGAG	3 cut(s)	68, 73, 812
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	897
BsaJI	CCNNGG	3 cut(s)	39, 439, 726
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	3 cut(s)	567, 598, 661
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	39, 439, 726
BseGI	GGATG	2 cut(s)	263, 435
BseNI	ACTGG	3 cut(s)	567, 598, 661
BseRI	GAGGAG	2 cut(s)	56, 191
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	861
BshFI	GGCC	5 cut(s)	183, 485, 597, 744, 869
BsiSI	CCGG	3 cut(s)	337, 578, 870
BslFI	GGGAC	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	263, 307
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	5 cut(s)	183, 485, 597, 744, 869
Bsp143I	GATC	2 cut(s)	207, 243
Bsp19I	CCATGG	2 cut(s)	439, 726
BspANI	GGCC	5 cut(s)	183, 485, 597, 744, 869
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	82, 314, 576
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	567, 598, 661
BssECI	CCNNGG	3 cut(s)	39, 439, 726
BssMI	GATC	2 cut(s)	207, 243
BssT1I	CCWWGG	2 cut(s)	439, 726
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	106, 113, 134, 907
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	2 cut(s)	398, 812
BstBAI	YACGTR	1 cut(s)	897
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	2 cut(s)	439, 726
BstF5I	GGATG	2 cut(s)	263, 435
BstKTI	GATC	2 cut(s)	210, 246
BstMAI	GTCTC	2 cut(s)	263, 307
BstMBI	GATC	2 cut(s)	207, 243
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 491, 812
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	76, 576
BstSFI	CTRYAG	3 cut(s)	399, 622, 679
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	447
BsuRI	GGCC	5 cut(s)	183, 485, 597, 744, 869
BtgI	CCRYGG	2 cut(s)	439, 726
BtsCI	GGATG	2 cut(s)	263, 435
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	4 cut(s)	139, 363, 560, 844
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	4 cut(s)	74, 181, 503, 574
Csp6I	GTAC	4 cut(s)	64, 93, 167, 543
CviAII	CATG	5 cut(s)	332, 440, 727, 758, 911
CviQI	GTAC	4 cut(s)	64, 93, 167, 543
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	2 cut(s)	209, 245
DpnII	GATC	2 cut(s)	207, 243
DrdI	GACNNNNNNGTC	1 cut(s)	690
DseDI	GACNNNNNNGTC	1 cut(s)	690
EaeI	YGGCCR	2 cut(s)	483, 867
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	439, 726
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	74, 503, 574
Eco57I	CTGAAG	2 cut(s)	294, 734
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	439, 726
ErhI	CCWWGG	2 cut(s)	439, 726
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	5 cut(s)	335, 443, 730, 761, 914
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	5 cut(s)	331, 439, 726, 757, 910
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	2 cut(s)	270, 422
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	5 cut(s)	183, 485, 597, 744, 869
HapII	CCGG	3 cut(s)	337, 578, 870
Hin1II	CATG	5 cut(s)	335, 443, 730, 761, 914
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	8 cut(s)	186, 229, 395, 530, 633, 699, 731, 754
HpaII	CCGG	3 cut(s)	337, 578, 870
Hpy166II	GTNNAC	4 cut(s)	109, 116, 603, 622
Hpy188I	TCNGA	5 cut(s)	257, 503, 696, 753, 892
Hpy188III	TCNNGA	2 cut(s)	332, 572
Hpy8I	GTNNAC	4 cut(s)	109, 116, 603, 622
HpyAV	CCTTC	1 cut(s)	755
HpyCH4III	ACNGT	4 cut(s)	106, 113, 134, 907
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	5 cut(s)	128, 401, 421, 815, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 491, 812
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	5 cut(s)	335, 443, 730, 761, 914
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	207, 243
LmnI	GCTCC	5 cut(s)	43, 80, 283, 312, 766
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	248, 812
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	2 cut(s)	209, 245
MboI	GATC	2 cut(s)	207, 243
MboII	GAAGA	4 cut(s)	447, 622, 740, 872
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	3 cut(s)	25, 296, 352
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	539, 642
MmeI	TCCRAC	1 cut(s)	870
MnlI	CCTC	6 cut(s)	34, 169, 172, 516, 769, 836
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	5 cut(s)	32, 515, 653, 771, 878
MslI	CAYNNNNRTG	2 cut(s)	237, 444
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	3 cut(s)	337, 578, 870
MspR9I	CCNGG	2 cut(s)	78, 578
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	398, 491, 812
NciI	CCSGG	1 cut(s)	578
NcoI	CCATGG	2 cut(s)	439, 726
NdeII	GATC	2 cut(s)	207, 243
NlaIII	CATG	5 cut(s)	335, 443, 730, 761, 914
NlaIV	GGNNCC	3 cut(s)	82, 314, 576
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	793
PagI	TCATGA	1 cut(s)	331
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	6 cut(s)	186, 229, 395, 699, 731, 754
PflFI	GACNNNGTC	1 cut(s)	886
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	2 cut(s)	538, 641
PpsI	GAGTC	2 cut(s)	538, 641
Ppu21I	YACGTR	1 cut(s)	897
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	82, 314, 576
PspPI	GGNCC	4 cut(s)	74, 181, 503, 574
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	886
RsaI	GTAC	4 cut(s)	65, 94, 168, 544
RsaNI	GTAC	4 cut(s)	64, 93, 167, 543
RseI	CAYNNNNRTG	2 cut(s)	237, 444
SaqAI	TTAA	5 cut(s)	32, 515, 653, 771, 878
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	207, 243
Sau96I	GGNCC	4 cut(s)	74, 181, 503, 574
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	2 cut(s)	539, 642
ScrFI	CCNGG	2 cut(s)	78, 578
SfaNI	GCATC	2 cut(s)	248, 812
SfcI	CTRYAG	3 cut(s)	399, 622, 679
SinI	GGWCC	3 cut(s)	74, 503, 574
SmiMI	CAYNNNNRTG	2 cut(s)	237, 444
SmlI	CTYRAG	3 cut(s)	47, 88, 827
SmoI	CTYRAG	3 cut(s)	47, 88, 827
Sse9I	AATT	3 cut(s)	25, 296, 352
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	76, 576
StyI	CCWWGG	2 cut(s)	439, 726
TaaI	ACNGT	4 cut(s)	106, 113, 134, 907
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	1 cut(s)	189
TasI	AATT	3 cut(s)	25, 296, 352
TatI	WGTACW	3 cut(s)	63, 92, 542
TfiI	GAWTC	6 cut(s)	186, 229, 395, 699, 731, 754
Tru1I	TTAA	5 cut(s)	32, 515, 653, 771, 878
Tru9I	TTAA	5 cut(s)	32, 515, 653, 771, 878
TscAI	CASTG	4 cut(s)	139, 363, 567, 844
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	309, 320, 746, 899
TspRI	CASTG	4 cut(s)	139, 363, 567, 844
Tth111I	GACNNNGTC	1 cut(s)	886
VpaK11BI	GGWCC	3 cut(s)	74, 503, 574
XapI	RAATTY	3 cut(s)	25, 296, 352
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.